AT5G53640

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000062
Physical Location & Seq
Reverse (-)
21789919 .. 21790690
772 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G53640.1

Sequence Viewer

Length: 678 bp
ATGGTGAGGAGAAAGAAATCAAAACAGGCTTGTTCAAAAGGGTTGAATCAGAGGTTGAAGGAAGACAGAATAAGCCAATTCTATGAATCTTTGTTATGTCAAATACTTAATTATCTTCCTACAAAGGATGTTGTTAAGACAAGCGTTTTATCCACAAGATGGAGAAGTCTCTGGCTTTTGGTTCCTAGTTTGGAATTGGATTCCCGAGATTTCTCTGATTTCAATACCTTTGTGAGTTTTTGTGATAGGTATTTCGATTCCAATAGGGTTCTATGCATAAACAAGCTCAAGTTAACTATTAGTGAAAATGAAGAAGATGGCTTTTATCTCAAGTCATGGATTGATGCTGCAGCTAAGCGTAAGATCCAACATCTAGATGTTCAGTTTCTGCCTCAGTTTCATAAGATTCATTTTAATCTTTATAAATGTGAGGCACTGGTTTCCTTAAGACTCTTTGAGGTGTCCTTGGATAAAGGCAGGATCTTCTCTTTCCCTTGTATGAAGACTATGCATTTAGAAGATAACGTGTATCCCAATGAAGCCACTTTTAAGGAACTTATCTCTTGCTGCCCTGTCTTGGAAGATTTAACGGTTATCATTTATGGGATGGATAGAAAAGTCTTTCAGGTTTACCGATTCTTAACTTGTATAAATACAGACCTAAGGGTCCATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

225

Amino Acids

26.64

Weight (kDa)

8.8

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 27 - 62 1.5e-07 F-box domain
LRR_At5g56370 PF24758 110 - 200 1.1e-08 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 166 - 191 1.1e-08 Leucine Rich Repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
AasI GACNNNNNNGTC 1 cut(s) 665
AccB7I CCANNNNNTGG 1 cut(s) 159
AclWI GGATC 2 cut(s) 358, 488
AfiI CCNNNNNNNGG 2 cut(s) 159, 577
AflII CTTAAG 1 cut(s) 445
AflIII ACRYGT 1 cut(s) 525
AgsI TTSAA 4 cut(s) 36, 46, 58, 223
AluBI AGCT 2 cut(s) 286, 353
AluI AGCT 2 cut(s) 286, 353
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 2 cut(s) 358, 488
AlwNI CAGNNNCTG 1 cut(s) 388
Ama87I CYCGRG 1 cut(s) 204
ApeKI GCWGC 3 cut(s) 347, 350, 567
AspS9I GGNCC 1 cut(s) 667
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 204
AvaII GGWCC 1 cut(s) 667
AxyI CCTNAGG 1 cut(s) 662
BbsI GAAGAC 2 cut(s) 69, 509
BbvI GCAGC 3 cut(s) 334, 362, 554
BccI CCATC 3 cut(s) 153, 311, 601
BciVI GTATCC 1 cut(s) 540
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 2 cut(s) 186, 374
BfmI CTRYAG 1 cut(s) 348
BfrI CTTAAG 1 cut(s) 445
BfuI GTATCC 1 cut(s) 540
BisI GCNGC 3 cut(s) 348, 351, 568
BlpI GCTNAGC 1 cut(s) 354
BlsI GCNGC 3 cut(s) 349, 352, 569
Bme18I GGWCC 1 cut(s) 667
BmeT110I CYCGRG 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 667
BmiI GGNNCC 2 cut(s) 183, 668
BmsI GCATC 1 cut(s) 334
BpiI GAAGAC 2 cut(s) 69, 509
Bpu1102I GCTNAGC 1 cut(s) 354
BpuEI CTTGAG 2 cut(s) 272, 314
BsaJI CCNNGG 1 cut(s) 465
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 577
Bse1I ACTGG 1 cut(s) 441
Bse21I CCTNAGG 1 cut(s) 662
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 2 cut(s) 133, 612
BseLI CCNNNNNNNGG 2 cut(s) 159, 577
BseMII CTCAG 1 cut(s) 407
BseNI ACTGG 1 cut(s) 441
BseRI GAGGAG 1 cut(s) 22
BseXI GCAGC 3 cut(s) 334, 362, 554
BsiHKCI CYCGRG 1 cut(s) 204
BslI CCNNNNNNNGG 2 cut(s) 159, 577
BsmAI GTCTC 1 cut(s) 173
BsoBI CYCGRG 1 cut(s) 204
Bsp143I GATC 2 cut(s) 363, 480
Bsp1720I GCTNAGC 1 cut(s) 354
BspCNI CTCAG 1 cut(s) 406
BspLI GGNNCC 2 cut(s) 183, 668
BspMAI CTGCAG 1 cut(s) 352
BspPI GGATC 2 cut(s) 358, 488
BspTI CTTAAG 1 cut(s) 445
BsrI ACTGG 1 cut(s) 441
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 2 cut(s) 363, 480
BssT1I CCWWGG 1 cut(s) 465
Bst4CI ACNGT 1 cut(s) 592
BstAFI CTTAAG 1 cut(s) 445
BstDEI CTNAG 3 cut(s) 354, 393, 662
BstF5I GGATG 2 cut(s) 133, 612
BstKTI GATC 2 cut(s) 366, 483
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 2 cut(s) 363, 480
BstSFI CTRYAG 1 cut(s) 348
BstV1I GCAGC 3 cut(s) 334, 362, 554
BstV2I GAAGAC 2 cut(s) 69, 509
BstX2I RGATCY 2 cut(s) 363, 480
BstYI RGATCY 2 cut(s) 363, 480
Bsu36I CCTNAGG 1 cut(s) 662
BsuI GTATCC 1 cut(s) 540
BtsCI GGATG 2 cut(s) 133, 612
BtsIMutI CAGTG 1 cut(s) 434
CaiI CAGNNNCTG 1 cut(s) 388
Cfr13I GGNCC 1 cut(s) 667
CviAII CATG 1 cut(s) 336
CviJI RGCY 7 cut(s) 29, 75, 175, 286, 321, 353, 542
CviKI_1 RGCY 7 cut(s) 29, 75, 175, 286, 321, 353, 542
DdeI CTNAG 3 cut(s) 354, 393, 662
DpnI GATC 2 cut(s) 365, 482
DpnII GATC 2 cut(s) 363, 480
DrdI GACNNNNNNGTC 1 cut(s) 665
DseDI GACNNNNNNGTC 1 cut(s) 665
Eco130I CCWWGG 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 667
Eco81I CCTNAGG 1 cut(s) 662
Eco88I CYCGRG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 465
EcoT22I ATGCAT 2 cut(s) 278, 513
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 1 cut(s) 339
FatI CATG 1 cut(s) 335
Fnu4HI GCNGC 3 cut(s) 348, 351, 568
FokI GGATG 2 cut(s) 140, 619
Fsp4HI GCNGC 3 cut(s) 348, 351, 568
FspBI CTAG 2 cut(s) 186, 374
GluI GCNGC 3 cut(s) 348, 351, 568
Hin1II CATG 1 cut(s) 339
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HinfI GANTC 7 cut(s) 46, 86, 200, 257, 406, 450, 636
HpaI GTTAAC 1 cut(s) 294
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 294, 631
Hpy188I TCNGA 2 cut(s) 51, 217
Hpy188III TCNNGA 2 cut(s) 204, 374
Hpy8I GTNNAC 2 cut(s) 294, 631
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 1 cut(s) 592
HpyCH4IV ACGT 1 cut(s) 525
HpyCH4V TGCA 3 cut(s) 276, 350, 511
HpyF3I CTNAG 3 cut(s) 354, 393, 662
HpySE526I ACGT 1 cut(s) 525
Hsp92II CATG 1 cut(s) 339
KspAI GTTAAC 1 cut(s) 294
Kzo9I GATC 2 cut(s) 363, 480
LpnPI CCDG 6 cut(s) 11, 157, 422, 463, 585, 611
Lsp1109I GCAGC 3 cut(s) 334, 362, 554
LweI GCATC 1 cut(s) 334
MaeI CTAG 2 cut(s) 186, 374
MaeII ACGT 1 cut(s) 525
MalI GATC 2 cut(s) 365, 482
MboI GATC 2 cut(s) 363, 480
MboII GAAGA 8 cut(s) 74, 107, 323, 326, 475, 514, 530, 593
MflI RGATCY 2 cut(s) 363, 480
MluCI AATT 3 cut(s) 77, 109, 194
MlyI GAGTC 1 cut(s) 444
MmeI TCCRAC 1 cut(s) 391
MnlI CCTC 4 cut(s) 45, 402, 424, 451
Mph1103I ATGCAT 2 cut(s) 278, 513
MseI TTAA 8 cut(s) 108, 135, 293, 414, 446, 549, 587, 641
MslI CAYNNNNRTG 1 cut(s) 375
MspCI CTTAAG 1 cut(s) 445
NdeII GATC 2 cut(s) 363, 480
NlaIII CATG 1 cut(s) 339
NlaIV GGNNCC 2 cut(s) 183, 668
NsiI ATGCAT 2 cut(s) 278, 513
PfeI GAWTC 6 cut(s) 46, 86, 200, 257, 406, 636
PflMI CCANNNNNTGG 1 cut(s) 159
PkrI GCNGC 3 cut(s) 349, 352, 569
PleI GAGTC 1 cut(s) 444
PpsI GAGTC 1 cut(s) 444
PsiI TTATAA 1 cut(s) 423
PspN4I GGNNCC 2 cut(s) 183, 668
PspPI GGNCC 1 cut(s) 667
PstI CTGCAG 1 cut(s) 352
PstNI CAGNNNCTG 1 cut(s) 388
PsuI RGATCY 2 cut(s) 363, 480
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 8 cut(s) 108, 135, 293, 414, 446, 549, 587, 641
SatI GCNGC 3 cut(s) 348, 351, 568
Sau3AI GATC 2 cut(s) 363, 480
Sau96I GGNCC 1 cut(s) 667
SchI GAGTC 1 cut(s) 444
SetI ASST 9 cut(s) 56, 230, 251, 288, 355, 462, 528, 630, 663
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 348
SinI GGWCC 1 cut(s) 667
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 3 cut(s) 287, 329, 445
SmoI CTYRAG 3 cut(s) 287, 329, 445
Sse9I AATT 3 cut(s) 77, 109, 194
SspMI CTAG 2 cut(s) 186, 374
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 1 cut(s) 592
TaiI ACGT 1 cut(s) 528
TaqI TCGA 1 cut(s) 255
TasI AATT 3 cut(s) 77, 109, 194
TfiI GAWTC 6 cut(s) 46, 86, 200, 257, 406, 636
Tru1I TTAA 8 cut(s) 108, 135, 293, 414, 446, 549, 587, 641
Tru9I TTAA 8 cut(s) 108, 135, 293, 414, 446, 549, 587, 641
TscAI CASTG 1 cut(s) 441
TseI GCWGC 3 cut(s) 347, 350, 567
TspDTI ATGAA 6 cut(s) 99, 324, 389, 398, 515, 552
TspRI CASTG 1 cut(s) 441
Van91I CCANNNNNTGG 1 cut(s) 159
Vha464I CTTAAG 1 cut(s) 445
VpaK11BI GGWCC 1 cut(s) 667
XbaI TCTAGA 1 cut(s) 373
XspI CTAG 2 cut(s) 186, 374
Zsp2I ATGCAT 2 cut(s) 278, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.