Rorug07G0187200

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
15793409 .. 15794290
882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0187200.1

Sequence Viewer

Length: 882 bp
ATGATATATGTTGAGATTAGTAAGGATTTATATTATGAACAATTGAAGAATTTTCACACCAATCTCATTGGTACACTTCTACTTCATAAAGGGTCTATTCCTATGAGAATTGATTCTCTGGAAGCATCCCTTGCAGCTCAATGGAACTCTACGAACCCATGTCACTTGGTTCCTTTGGGTAAAGGTTTCTTTGACATTCATTTCAGTAGTGAAGATGACATGAGAAAAATTTGGAGAAGTGGTACATTTTCCCTTGCTAATGGAATTTTTCTGTTATTGGAATGGAAACCAGACTTCAAACCAGGTGCTAACCTTCCTCAAACGTACACATACTCAAGTGTGGATTTGAATTTATGGATTAAGCTAGAATTATTGGCATCCTCGCCATCTATTGATGAGATTGAGCCTATTGATTCAAGTGTCACTGTGTTGGCTGGTCCGAGTGAACCACATGTGGAGAGTACAGCTCCAATAGGATCTGCAAGTAATGTCAATGTTTCGACTAGTAACAGTTTTGAGATCCTTACTGAAGTGCAACAAGAACCTATTGTTGCAAATGAACAAGAGATAGTTGGACTCCCCTTAAACACTTTGGTTGACTATGAGGATTCTGCTTTAGTGGAACATAATGTTCAAGAGCTTTGTTGGGGTGATTTGGAAAATGAAGAACCTCTTGGTCATACAATTTATGTTCAATCTAAGATCAATTATGAAACTTGGTTTGATGAGGGTGAAGCAACTTTAGATGAGAATATTCTTCGCGCTCTCCCAAAGTCTCAACACAAAAAATTCAAGGCAAAATGTCAAAGGATTCAAGGTATCATGCACGCAATCAGACACTTACGGTGCGTCTCAACCTTTGGTCGTTTGGATTTCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

293

Amino Acids

32.97

Weight (kDa)

4.88

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 37 - 101 3.3e-10 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 762
AclWI GGATC 2 cut(s) 484, 514
AcsI RAATTY 5 cut(s) 49, 228, 264, 349, 788
AcuI CTGAAG 1 cut(s) 549
AfaI GTAC 4 cut(s) 73, 244, 326, 463
AflIII ACRYGT 1 cut(s) 451
AgsI TTSAA 8 cut(s) 46, 298, 349, 417, 635, 695, 793, 815
AhlI ACTAGT 1 cut(s) 503
AjnI CCWGG 1 cut(s) 301
AjuI GAANNNNNNNTTGG 2 cut(s) 657, 689
AluBI AGCT 4 cut(s) 137, 364, 467, 640
AluI AGCT 4 cut(s) 137, 364, 467, 640
Alw26I GTCTC 2 cut(s) 780, 856
AlwI GGATC 2 cut(s) 484, 514
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 5 cut(s) 49, 228, 264, 349, 788
Asp700I GAANNNNTTC 1 cut(s) 112
AspLEI GCGC 1 cut(s) 764
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 2 cut(s) 662, 743
AvaII GGWCC 1 cut(s) 437
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 394
BciT130I CCWGG 1 cut(s) 303
BcoDI GTCTC 2 cut(s) 780, 856
BcuI ACTAGT 1 cut(s) 503
BfaI CTAG 2 cut(s) 365, 504
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 2 cut(s) 134, 386
BplI GAGNNNNNCTC 2 cut(s) 451, 483
BpuEI CTTGAG 1 cut(s) 319
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
BseBI CCWGG 1 cut(s) 303
BseGI GGATG 2 cut(s) 125, 377
BseXI GCAGC 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 762
BsmAI GTCTC 2 cut(s) 780, 856
BsmBI CGTCTC 1 cut(s) 856
Bsp143I GATC 3 cut(s) 476, 519, 702
BspFNI CGCG 1 cut(s) 762
BspLI GGNNCC 1 cut(s) 171
BspPI GGATC 2 cut(s) 484, 514
BssMI GATC 3 cut(s) 476, 519, 702
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 3 cut(s) 427, 512, 846
BstAPI GCANNNNNTGC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 828
BstDEI CTNAG 1 cut(s) 699
BstF5I GGATG 2 cut(s) 125, 377
BstFNI CGCG 1 cut(s) 762
BstHHI GCGC 1 cut(s) 764
BstKTI GATC 3 cut(s) 479, 522, 705
BstMAI GTCTC 2 cut(s) 780, 856
BstMBI GATC 3 cut(s) 476, 519, 702
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 303
BstNSI RCATGY 1 cut(s) 455
BstSCI CCNGG 1 cut(s) 301
BstUI CGCG 1 cut(s) 762
BstV1I GCAGC 1 cut(s) 146
BstX2I RGATCY 2 cut(s) 476, 519
BstYI RGATCY 2 cut(s) 476, 519
BtsCI GGATG 2 cut(s) 125, 377
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 1 cut(s) 828
CfoI GCGC 1 cut(s) 764
Cfr13I GGNCC 1 cut(s) 437
CseI GACGC 1 cut(s) 838
CsiI ACCWGGT 1 cut(s) 301
Csp6I GTAC 4 cut(s) 72, 243, 325, 462
CviAII CATG 4 cut(s) 159, 220, 452, 823
CviJI RGCY 6 cut(s) 137, 364, 406, 434, 467, 640
CviKI_1 RGCY 6 cut(s) 137, 364, 406, 434, 467, 640
CviQI GTAC 4 cut(s) 72, 243, 325, 462
DdeI CTNAG 1 cut(s) 699
DpnI GATC 3 cut(s) 478, 521, 704
DpnII GATC 3 cut(s) 476, 519, 702
Eco47I GGWCC 1 cut(s) 437
Eco57I CTGAAG 1 cut(s) 549
EcoRII CCWGG 1 cut(s) 301
Esp3I CGTCTC 1 cut(s) 856
FaeI CATG 4 cut(s) 162, 223, 455, 826
FalI AAGNNNNNCTT 4 cut(s) 114, 146, 657, 689
FatI CATG 4 cut(s) 158, 219, 451, 822
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 2 cut(s) 112, 364
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 2 cut(s) 365, 504
GlaI GCGC 1 cut(s) 763
GluI GCNGC 1 cut(s) 135
HgaI GACGC 1 cut(s) 838
HhaI GCGC 1 cut(s) 764
Hin1II CATG 4 cut(s) 162, 223, 455, 826
Hin6I GCGC 1 cut(s) 762
HinP1I GCGC 1 cut(s) 762
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 5 cut(s) 113, 413, 576, 608, 811
HphI GGTGA 2 cut(s) 662, 743
Hpy166II GTNNAC 4 cut(s) 74, 327, 446, 598
Hpy188I TCNGA 2 cut(s) 441, 836
Hpy188III TCNNGA 2 cut(s) 119, 635
Hpy8I GTNNAC 4 cut(s) 74, 327, 446, 598
HpyAV CCTTC 1 cut(s) 323
HpyCH4III ACNGT 3 cut(s) 427, 512, 846
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 5 cut(s) 134, 482, 535, 554, 826
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 699
HpySE526I ACGT 1 cut(s) 323
Hsp92II CATG 4 cut(s) 162, 223, 455, 826
HspAI GCGC 1 cut(s) 762
Kzo9I GATC 3 cut(s) 476, 519, 702
LmnI GCTCC 1 cut(s) 472
LpnPI CCDG 5 cut(s) 104, 288, 303, 315, 420
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 2 cut(s) 134, 386
MabI ACCWGGT 1 cut(s) 301
MaeI CTAG 2 cut(s) 365, 504
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 3 cut(s) 161, 421, 506
MalI GATC 3 cut(s) 478, 521, 704
MboI GATC 3 cut(s) 476, 519, 702
MboII GAAGA 4 cut(s) 58, 224, 677, 749
MfeI CAATTG 1 cut(s) 41
MflI RGATCY 2 cut(s) 476, 519
MlyI GAGTC 1 cut(s) 570
MmeI TCCRAC 1 cut(s) 553
MnlI CCTC 5 cut(s) 327, 391, 598, 681, 721
MroXI GAANNNNTTC 1 cut(s) 112
MseI TTAA 3 cut(s) 360, 584, 880
MspR9I CCNGG 1 cut(s) 303
MunI CAATTG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 303
MvnI CGCG 1 cut(s) 762
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 3 cut(s) 476, 519, 702
NlaIII CATG 4 cut(s) 162, 223, 455, 826
NlaIV GGNNCC 1 cut(s) 171
NmuCI GTSAC 2 cut(s) 161, 421
NspI RCATGY 1 cut(s) 455
PciI ACATGT 1 cut(s) 451
PdmI GAANNNNTTC 1 cut(s) 112
PfeI GAWTC 4 cut(s) 113, 413, 608, 811
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 570
PpsI GAGTC 1 cut(s) 570
PscI ACATGT 1 cut(s) 451
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 437
PsuI RGATCY 2 cut(s) 476, 519
RsaI GTAC 4 cut(s) 73, 244, 326, 463
RsaNI GTAC 4 cut(s) 72, 243, 325, 462
SaqAI TTAA 3 cut(s) 360, 584, 880
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 3 cut(s) 476, 519, 702
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 1 cut(s) 570
ScrFI CCNGG 1 cut(s) 303
SexAI ACCWGGT 1 cut(s) 301
SfaNI GCATC 2 cut(s) 134, 386
SinI GGWCC 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
SpeI ACTAGT 1 cut(s) 503
SspI AATATT 1 cut(s) 754
SspMI CTAG 2 cut(s) 365, 504
StyD4I CCNGG 1 cut(s) 301
TaaI ACNGT 3 cut(s) 427, 512, 846
TaiI ACGT 1 cut(s) 326
TaqI TCGA 1 cut(s) 500
TatI WGTACW 1 cut(s) 461
TfiI GAWTC 4 cut(s) 113, 413, 608, 811
Tru1I TTAA 3 cut(s) 360, 584, 880
Tru9I TTAA 3 cut(s) 360, 584, 880
TscAI CASTG 1 cut(s) 430
TseFI GTSAC 2 cut(s) 161, 421
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 2 cut(s) 161, 421
TspDTI ATGAA 6 cut(s) 51, 74, 188, 573, 678, 726
TspRI CASTG 1 cut(s) 430
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 5 cut(s) 49, 228, 264, 349, 788
XceI RCATGY 1 cut(s) 455
XmnI GAANNNNTTC 1 cut(s) 112
XspI CTAG 2 cut(s) 365, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.