Rorug04G0147700

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000062
Physical Location & Seq
Forward (+)
25912808 .. 25919263
6456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0147700.1

Sequence Viewer

Length: 1302 bp
ATGATGAACGCGCAGGCTCAGCCGGCAATGGCAGGTCCTCAAGGTTACCCTCATCATCAGCCTACTTCAGTCGAAGAGGTCAGAACCCTCTGGATTGGTGACCTACAGTACTGGGTCGACGAGAACTACCTCACTACTTGCTTTGCTCACACCGGCGAGGTGATTTCTATAAAGATCATACGTAACAAAATCACTGGGCAGCCCGAGGGTTACGGCTTTGTGGAGTTTGTCTCACACGCCGCAGCCGAAAGGATTCTGCATGCTTACAATGGCACTCAAATGCCTGGAACTGAGCAGACTTTTAGGTTGAATTGGGCTTCTTTTGGTATCGGCGAACGGCGTCCTGATGCTGGCCCTGAGCACTCCATTTTCGTAGGGGATTTGGCCCCTGATGTCACCGATTATGTGCTGCAAGAGACTTTTCGGAATACGTATCCGTCCGTTAGAGGTGCCAAGGTTGTCACTGATCCTAACACTGGACGCTCGAAAGGTTATGGCTTTGTCAAGTTTGCTGATGAGGCGGAAAGGAACCGTGCTATGACTGAAATGAATGGTGTTTATTGCTCAACTAGGCCGATGCGGATCAGTGCAGCAACACCAAAGAAAACCACTGGTTTTCAGCAGCAGTATGCTGCAGCAAAAGCTGTATATCCTGTTCCGGCATACACTACACCAGCAGTTCCTGTAGTACCAACAGCAGATTATGATGCAAACAACACTACGATTTTTGTTGGAAACTTGGATCCTAATATTACTGAGGAGGAATTGAAGCAAACGTTTTTGCAATTTGGAGATATTGTCTATGTCAAGATTCCTGCAGGCAAAGGCTGTGGTTTTGTACAGTTTGGGACAAGGGCATCTGCTGAAGAAGCTATACAAAGGATGCAAGGAAAGATGATTGGCCAACAAGTGGTCCGCATTTTTTGGGGTAGGAGCCCAACAGCTAAACAGGATGTACTTGGTAGCTGGGGCCAGCAAGTAGATCCAAATCAATGGAGTGCATATTATGGTTATGGTCAAGGCTATGATCCCTATGCCTATGGAGCTTCTCAAGATCCATCGTTGTATGCATACAGTGGATATGCCGGTTATGGCCAATATCCTCAACAGGTTGAAGGAGTTCAAGATATGGCAGCTATGGTTGGTACTGTTCCATATTTAGAACAGAGGGATGAACTGGATGATCCCTTGGCTACACCTGATGTTGACAAGTTGAGTGCTGCTTACCTCTCTGTACATGGAAGGGCCATTTTGGGCCACCCCTTGTGGCTAAGAACATCAGCGTTTCTGCAGCAAGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

433

Amino Acids

47.82

Weight (kDa)

5.35

Isoelectric Point (pI)

33.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 30 - 98 1.1e-13 RNA recognition motif
RRM_1 PF00076 123 - 188 2.8e-16 RNA recognition motif
RRM_1 PF00076 242 - 305 7.2e-19 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 23
AccB1I GGYRCC 1 cut(s) 449
AccB7I CCANNNNNTGG 1 cut(s) 910
AccI GTMKAC 1 cut(s) 117
AccII CGCG 1 cut(s) 11
AciI CCGC 4 cut(s) 240, 521, 580, 916
AclI AACGTT 1 cut(s) 776
AclWI GGATC 8 cut(s) 461, 590, 737, 750, 977, 1022, 1049, 1178
AcoI YGGCCR 2 cut(s) 901, 1093
AcuI CTGAAG 2 cut(s) 51, 885
AcyI GRCGYC 1 cut(s) 340
AfaI GTAC 6 cut(s) 110, 690, 840, 957, 1147, 1236
AfiI CCNNNNNNNGG 3 cut(s) 350, 476, 910
AgsI TTSAA 4 cut(s) 310, 769, 1115, 1124
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 6 cut(s) 644, 872, 944, 966, 1046, 1136
AluI AGCT 6 cut(s) 644, 872, 944, 966, 1046, 1136
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 2 cut(s) 235, 410
AlwI GGATC 8 cut(s) 461, 590, 737, 750, 977, 1022, 1049, 1178
AlwNI CAGNNNCTG 1 cut(s) 683
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 8 cut(s) 352, 384, 572, 901, 970, 1093, 1245, 1255
Asp700I GAANNNNTTC 2 cut(s) 252, 1119
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 7 cut(s) 35, 353, 385, 913, 970, 1245, 1255
AsuHPI GGTGA 3 cut(s) 110, 172, 388
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 2 cut(s) 35, 913
BalI TGGCCA 2 cut(s) 903, 1095
BamHI GGATCC 1 cut(s) 742
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 1 cut(s) 938
BarI GAAGNNNNNNTAC 2 cut(s) 858, 890
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 9 cut(s) 211, 254, 396, 602, 619, 634, 647, 1145, 1207
BccI CCATC 1 cut(s) 1066
BceAI ACGGC 2 cut(s) 229, 353
BciT130I CCWGG 1 cut(s) 285
BciVI GTATCC 1 cut(s) 444
BcoDI GTCTC 2 cut(s) 235, 410
BfaI CTAG 1 cut(s) 570
BfmI CTRYAG 5 cut(s) 104, 633, 684, 816, 1289
BfuAI ACCTGC 1 cut(s) 23
BfuI GTATCC 1 cut(s) 444
BlpI GCTNAGC 1 cut(s) 18
BmcAI AGTACT 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 285
Bme18I GGWCC 2 cut(s) 35, 913
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 7 cut(s) 35, 353, 385, 913, 970, 1245, 1255
BmiI GGNNCC 6 cut(s) 387, 451, 530, 744, 935, 971
BmrFI CCNGG 1 cut(s) 285
BmrI ACTGGG 2 cut(s) 121, 204
BmsI GCATC 5 cut(s) 337, 567, 697, 866, 873
BmuI ACTGGG 2 cut(s) 121, 204
BplI GAGNNNNNCTC 2 cut(s) 215, 247
Bpu10I CCTNAGC 1 cut(s) 357
Bpu1102I GCTNAGC 1 cut(s) 18
BpuEI CTTGAG 2 cut(s) 24, 1035
BsaAI YACGTR 2 cut(s) 182, 432
BsaBI GATNNNNATC 2 cut(s) 581, 987
BsaHI GRCGYC 1 cut(s) 340
BsaJI CCNNGG 3 cut(s) 204, 453, 1188
BsaXI ACNNNNNCTCC 2 cut(s) 783, 813
Bsc4I CCNNNNNNNGG 3 cut(s) 350, 476, 910
Bse118I RCCGGY 3 cut(s) 22, 152, 1085
Bse1I ACTGG 5 cut(s) 116, 199, 481, 616, 1182
Bse3DI GCAATG 1 cut(s) 33
Bse8I GATNNNNATC 2 cut(s) 581, 987
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 3 cut(s) 204, 453, 1188
BseGI GGATG 4 cut(s) 888, 958, 1177, 1186
BseJI GATNNNNATC 2 cut(s) 581, 987
BseLI CCNNNNNNNGG 3 cut(s) 350, 476, 910
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 4 cut(s) 32, 282, 348, 747
BseNI ACTGG 5 cut(s) 116, 199, 481, 616, 1182
BseRI GAGGAG 1 cut(s) 773
BseXI GCAGC 9 cut(s) 211, 254, 396, 602, 619, 634, 647, 1145, 1207
BseYI CCCAGC 1 cut(s) 966
BsgI GTGCAG 1 cut(s) 609
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 8 cut(s) 354, 386, 574, 903, 972, 1095, 1247, 1257
BshNI GGYRCC 1 cut(s) 449
BsiHKAI GWGCWC 1 cut(s) 363
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 4 cut(s) 23, 153, 659, 1086
BslFI GGGAC 1 cut(s) 862
BslI CCNNNNNNNGG 3 cut(s) 350, 476, 910
BsmAI GTCTC 2 cut(s) 235, 410
BsmFI GGGAC 1 cut(s) 862
BsnI GGCC 8 cut(s) 354, 386, 574, 903, 972, 1095, 1247, 1257
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 363, 938
Bsp1407I TGTACA 2 cut(s) 838, 1234
Bsp143I GATC 8 cut(s) 174, 466, 582, 742, 982, 1027, 1054, 1183
Bsp1720I GCTNAGC 1 cut(s) 18
BspACI CCGC 4 cut(s) 240, 521, 580, 916
BspANI GGCC 8 cut(s) 354, 386, 574, 903, 972, 1095, 1247, 1257
BspCNI CTCAG 4 cut(s) 31, 283, 349, 748
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 6 cut(s) 387, 451, 530, 744, 935, 971
BspMAI CTGCAG 3 cut(s) 637, 820, 1293
BspMI ACCTGC 1 cut(s) 23
BspPI GGATC 8 cut(s) 461, 590, 737, 750, 977, 1022, 1049, 1178
BspT107I GGYRCC 1 cut(s) 449
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 3 cut(s) 22, 152, 1085
BsrGI TGTACA 2 cut(s) 838, 1234
BsrI ACTGG 5 cut(s) 116, 199, 481, 616, 1182
BssAI RCCGGY 3 cut(s) 22, 152, 1085
BssECI CCNNGG 3 cut(s) 204, 453, 1188
BssMI GATC 8 cut(s) 174, 466, 582, 742, 982, 1027, 1054, 1183
BssNI GRCGYC 1 cut(s) 340
BssT1I CCWWGG 2 cut(s) 453, 1188
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 5 cut(s) 108, 533, 843, 1076, 1150
Bst6I CTCTTC 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 340
BstAUI TGTACA 2 cut(s) 838, 1234
BstBAI YACGTR 2 cut(s) 182, 432
BstC8I GCNNGC 7 cut(s) 15, 24, 261, 352, 820, 974, 1296
BstDEI CTNAG 5 cut(s) 18, 291, 357, 756, 1271
BstEII GGTNACC 2 cut(s) 44, 98
BstF5I GGATG 4 cut(s) 888, 958, 1177, 1186
BstFNI CGCG 1 cut(s) 11
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 8 cut(s) 177, 469, 585, 745, 985, 1030, 1057, 1186
BstMAI GTCTC 2 cut(s) 235, 410
BstMBI GATC 8 cut(s) 174, 466, 582, 742, 982, 1027, 1054, 1183
BstMWI GCNNNNNNNGC 6 cut(s) 19, 23, 518, 641, 869, 1043
BstNI CCWGG 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 263
BstPI GGTNACC 2 cut(s) 44, 98
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 5 cut(s) 104, 633, 684, 816, 1289
BstSNI TACGTA 2 cut(s) 182, 432
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 9 cut(s) 211, 254, 396, 602, 619, 634, 647, 1145, 1207
BstX2I RGATCY 3 cut(s) 742, 982, 1054
BstXI CCANNNNNNTGG 1 cut(s) 993
BstYI RGATCY 3 cut(s) 742, 982, 1054
BsuI GTATCC 1 cut(s) 444
BsuRI GGCC 8 cut(s) 354, 386, 574, 903, 972, 1095, 1247, 1257
BtsCI GGATG 4 cut(s) 888, 958, 1177, 1186
BtsIMutI CAGTG 6 cut(s) 192, 462, 474, 592, 609, 1081
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 7 cut(s) 15, 24, 261, 352, 820, 974, 1296
CaiI CAGNNNCTG 1 cut(s) 683
CfoI GCGC 1 cut(s) 13
Cfr10I RCCGGY 3 cut(s) 22, 152, 1085
Cfr13I GGNCC 7 cut(s) 35, 353, 385, 913, 970, 1245, 1255
CseI GACGC 2 cut(s) 329, 489
Csp6I GTAC 6 cut(s) 109, 689, 839, 956, 1146, 1235
CspCI CAANNNNNGTGG 2 cut(s) 811, 846
CviAII CATG 2 cut(s) 260, 1238
CviQI GTAC 6 cut(s) 109, 689, 839, 956, 1146, 1235
DdeI CTNAG 5 cut(s) 18, 291, 357, 756, 1271
DpnI GATC 8 cut(s) 176, 468, 584, 744, 984, 1029, 1056, 1185
DpnII GATC 8 cut(s) 174, 466, 582, 742, 982, 1027, 1054, 1183
EaeI YGGCCR 2 cut(s) 901, 1093
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
EciI GGCGGA 1 cut(s) 536
Eco105I TACGTA 2 cut(s) 182, 432
Eco130I CCWWGG 2 cut(s) 453, 1188
Eco24I GRGCYC 1 cut(s) 938
Eco47I GGWCC 2 cut(s) 35, 913
Eco57I CTGAAG 2 cut(s) 51, 885
Eco88I CYCGRG 1 cut(s) 203
Eco91I GGTNACC 2 cut(s) 44, 98
EcoO109I RGGNCCY 1 cut(s) 35
EcoO65I GGTNACC 2 cut(s) 44, 98
EcoRII CCWGG 1 cut(s) 283
EcoT14I CCWWGG 2 cut(s) 453, 1188
EcoT22I ATGCAT 1 cut(s) 1072
EcoT38I GRGCYC 1 cut(s) 938
ErhI CCWWGG 2 cut(s) 453, 1188
FaeI CATG 2 cut(s) 263, 1241
FaqI GGGAC 1 cut(s) 862
FatI CATG 2 cut(s) 259, 1237
FblI GTMKAC 1 cut(s) 117
FokI GGATG 4 cut(s) 895, 965, 1184, 1193
FriOI GRGCYC 1 cut(s) 938
FspBI CTAG 1 cut(s) 570
GlaI GCGC 1 cut(s) 12
GsaI CCCAGC 1 cut(s) 970
HaeIII GGCC 8 cut(s) 354, 386, 574, 903, 972, 1095, 1247, 1257
HapII CCGG 4 cut(s) 23, 153, 659, 1086
HgaI GACGC 2 cut(s) 329, 489
HhaI GCGC 1 cut(s) 13
Hin1I GRCGYC 1 cut(s) 340
Hin1II CATG 2 cut(s) 263, 1241
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HincII GTYRAC 2 cut(s) 118, 1207
HindII GTYRAC 2 cut(s) 118, 1207
HinfI GANTC 2 cut(s) 253, 811
HpaII CCGG 4 cut(s) 23, 153, 659, 1086
HphI GGTGA 3 cut(s) 110, 172, 388
Hpy166II GTNNAC 2 cut(s) 118, 1207
Hpy188I TCNGA 2 cut(s) 83, 426
Hpy188III TCNNGA 5 cut(s) 91, 344, 808, 1052, 1124
Hpy8I GTNNAC 2 cut(s) 118, 1207
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 2 cut(s) 1109, 1236
HpyCH4III ACNGT 5 cut(s) 108, 533, 843, 1076, 1150
HpyCH4IV ACGT 3 cut(s) 181, 431, 776
HpyF10VI GCNNNNNNNGC 6 cut(s) 19, 23, 518, 641, 869, 1043
HpyF3I CTNAG 5 cut(s) 18, 291, 357, 756, 1271
HpySE526I ACGT 3 cut(s) 181, 431, 776
Hsp92I GRCGYC 1 cut(s) 340
Hsp92II CATG 2 cut(s) 263, 1241
HspAI GCGC 1 cut(s) 11
KroI GCCGGC 1 cut(s) 22
KroNI GCCGGC 1 cut(s) 24
Kzo9I GATC 8 cut(s) 174, 466, 582, 742, 982, 1027, 1054, 1183
LmnI GCTCC 2 cut(s) 933, 1043
Lsp1109I GCAGC 9 cut(s) 211, 254, 396, 602, 619, 634, 647, 1145, 1207
LweI GCATC 5 cut(s) 337, 567, 697, 866, 873
MaeI CTAG 1 cut(s) 570
MaeII ACGT 3 cut(s) 181, 431, 776
MaeIII GTNAC 6 cut(s) 44, 98, 182, 209, 394, 460
MalI GATC 8 cut(s) 176, 468, 584, 744, 984, 1029, 1056, 1185
MboI GATC 8 cut(s) 174, 466, 582, 742, 982, 1027, 1054, 1183
MboII GAAGA 2 cut(s) 86, 878
MflI RGATCY 3 cut(s) 742, 982, 1054
MhlI GDGCHC 2 cut(s) 363, 938
MlsI TGGCCA 2 cut(s) 903, 1095
MluCI AATT 3 cut(s) 310, 764, 785
MluNI TGGCCA 2 cut(s) 903, 1095
MmeI TCCRAC 1 cut(s) 712
Mox20I TGGCCA 2 cut(s) 903, 1095
Mph1103I ATGCAT 1 cut(s) 1072
MroNI GCCGGC 1 cut(s) 22
MroXI GAANNNNTTC 2 cut(s) 252, 1119
MscI TGGCCA 2 cut(s) 903, 1095
MslI CAYNNNNRTG 1 cut(s) 278
Msp20I TGGCCA 2 cut(s) 903, 1095
MspI CCGG 4 cut(s) 23, 153, 659, 1086
MspR9I CCNGG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 285
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 6 cut(s) 19, 23, 518, 641, 869, 1043
NaeI GCCGGC 1 cut(s) 24
NdeII GATC 8 cut(s) 174, 466, 582, 742, 982, 1027, 1054, 1183
NgoMIV GCCGGC 1 cut(s) 22
NlaIII CATG 2 cut(s) 263, 1241
NlaIV GGNNCC 6 cut(s) 387, 451, 530, 744, 935, 971
NmuCI GTSAC 3 cut(s) 98, 394, 460
NsiI ATGCAT 1 cut(s) 1072
NspI RCATGY 1 cut(s) 263
PaeI GCATGC 1 cut(s) 263
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PdiI GCCGGC 1 cut(s) 24
PdmI GAANNNNTTC 2 cut(s) 252, 1119
PfeI GAWTC 2 cut(s) 253, 811
PflMI CCANNNNNTGG 1 cut(s) 910
Ppu21I YACGTR 2 cut(s) 182, 432
PpuMI RGGWCCY 1 cut(s) 35
Psp1406I AACGTT 1 cut(s) 776
Psp5II RGGWCCY 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 283
PspEI GGTNACC 2 cut(s) 44, 98
PspFI CCCAGC 1 cut(s) 966
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 6 cut(s) 387, 451, 530, 744, 935, 971
PspPI GGNCC 7 cut(s) 35, 353, 385, 913, 970, 1245, 1255
PspPPI RGGWCCY 1 cut(s) 35
PsrI GAACNNNNNNTAC 2 cut(s) 639, 671
PstI CTGCAG 3 cut(s) 637, 820, 1293
PstNI CAGNNNCTG 1 cut(s) 683
PsuI RGATCY 3 cut(s) 742, 982, 1054
RsaI GTAC 6 cut(s) 110, 690, 840, 957, 1147, 1236
RsaNI GTAC 6 cut(s) 109, 689, 839, 956, 1146, 1235
RseI CAYNNNNRTG 1 cut(s) 278
SalI GTCGAC 1 cut(s) 116
Sau3AI GATC 8 cut(s) 174, 466, 582, 742, 982, 1027, 1054, 1183
Sau96I GGNCC 7 cut(s) 35, 353, 385, 913, 970, 1245, 1255
SbfI CCTGCAGG 1 cut(s) 820
ScaI AGTACT 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 285
SdaI CCTGCAGG 1 cut(s) 820
SduI GDGCHC 2 cut(s) 363, 938
SfaNI GCATC 5 cut(s) 337, 567, 697, 866, 873
SfcI CTRYAG 5 cut(s) 104, 633, 684, 816, 1289
SgrAI CRCCGGYG 1 cut(s) 152
SinI GGWCC 2 cut(s) 35, 913
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 2 cut(s) 39, 1050
SmoI CTYRAG 2 cut(s) 39, 1050
SnaBI TACGTA 2 cut(s) 182, 432
SphI GCATGC 1 cut(s) 263
Sse8387I CCTGCAGG 1 cut(s) 820
Sse9I AATT 3 cut(s) 310, 764, 785
SsiI CCGC 4 cut(s) 240, 521, 580, 916
SspI AATATT 1 cut(s) 751
SspMI CTAG 1 cut(s) 570
StyD4I CCNGG 1 cut(s) 283
StyI CCWWGG 2 cut(s) 453, 1188
TaaI ACNGT 5 cut(s) 108, 533, 843, 1076, 1150
TaiI ACGT 3 cut(s) 184, 434, 779
TaqI TCGA 3 cut(s) 72, 117, 485
TasI AATT 3 cut(s) 310, 764, 785
TatI WGTACW 4 cut(s) 108, 838, 955, 1234
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 2 cut(s) 253, 811
TscAI CASTG 6 cut(s) 199, 469, 481, 592, 616, 1081
TseFI GTSAC 3 cut(s) 98, 394, 460
Tsp45I GTSAC 3 cut(s) 98, 394, 460
TspDTI ATGAA 3 cut(s) 20, 563, 1188
TspGWI ACGGA 2 cut(s) 426, 430
TspRI CASTG 6 cut(s) 199, 469, 481, 592, 616, 1081
Van91I CCANNNNNTGG 1 cut(s) 910
VpaK11BI GGWCC 2 cut(s) 35, 913
XceI RCATGY 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 117
XmnI GAANNNNTTC 2 cut(s) 252, 1119
XspI CTAG 1 cut(s) 570
ZrmI AGTACT 1 cut(s) 110
Zsp2I ATGCAT 1 cut(s) 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.