Rh5DG201600

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000062
Physical Location & Seq
Forward (+)
22352180 .. 22362528
10349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG201600.1

Sequence Viewer

Length: 1545 bp
ATGTGGGGATTGAATCGTGGATCTAATGCTTTGATTGAATCCGAGCTGATCACACCCTACTGTTCACTGACACTATTATTTTTCTGGGTGACCTCACAAGGACAAATGAATTCGAAATCAAAGCGTCAGTTGAGTGTTCCAGATAGGATCAGTGGGTTACCAGATGCACTTCTTTGGCACATACTTTCGTTTGTTGAAACACTAGATGCTGTGAGGACCTGTGTTCTGTCTACAAGATGGAAGAACATATGGGCGTCTGTTCCCACCTTAGATTTTGACCAGACAAGTTTTCATGACCCTGATAAATTTTGGGCATTTGTTGATTATGTACTTCTATTCCGTCACTCATTGAATATCAAAAAATTTCGGATTTATATGAAGGGCAAGGATGTGGACCACTCTCGTATTAATGCTTGGATCAACACTGCCATTAGGCGCAATGTTGTTGAACTTGATCTCTTAGCTGGGCATCCATTTCTATCCAAGCTTGTTGAGTTGCCTAAAAGCCTCTTCATGTGTAAAACACTGGTAATCTTGAGGTTGAGATCACAATTTATTACCAATATTCCTGCATCAGGGTGCTTCCCGAGTCTGAAGTTCCTCCATGTTACATTTTATTCAAATGTTATTGAATCAATGCGTGAGCTTTTCTCCAACTGTCCAATACTTGAAGATTTGACTGTGGATGGTCTTCTTCTATACGGTGTTTCCTTGAATTTAAACATTTCTGTCCCTGCACTGAAGACGTTAAGAATATGGTTTGATAAAGATGGTGATGATAATGGTGCCAGCAGCTATTTTATTAATTGCCCAAAGCTTGAAAATCTTGATGTGATAGAGGAGTTTTCATCAACATATTGTTGGGGGAAAGCAAAATCCCTAGTCAAAGCCAGTATTTGTCTACCTCAGCATTGTTCAAATCGACAGCCTAGTTTTTACCGTGTGAAATCACTTTTGGCAGGAATATCCAGTGTTACAGATTTATGTCTTTCAGCTCATTGTTTTGAGGTTGGTTCTCTGCCTGCTTATGAAAATTTGAGACGGTTGAAGCTGGTGATTCAAGATTGCTTTTGCTGGGAGTTGCTTACAAAGTTACTCAAAAGATCACCTATCCTGGAGTCTCTTGTCTTAGAATGTGAAGTCGGCGGTTGTCCTCAGGAAGACTCTGATAATGACGAAGGGTCAGTGTATGAAGAAGACTCCGAGAGTGAAGAGGGCTCTGAGCATGAAGAGGGTTCAGAGAATGAAAAAAGGTCAGATCATGAAGAAGGCTCAGTGAATGAACAAGGGTCAGAGCATCAATGGAATCCTCCAGATTGTGTGCCTAAATGTTGTTTGTTACACCTCAAGATTGTCTCCATAAGGGGATTCATGGGAGAACGTGATGAGTTGGAAGTGGCAAAGTACTTGCTGAAGTATGGTCAAGTTTTGAATAAGATGACTATATCTATGGATCATCTTGATGTTAATGAAAAAGAGAAGATTTACAAGGAGTTTTTAATGGTTCCAAGGGGTTCAAGAACTAGTATAGTTGAATTTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

514

Amino Acids

58.64

Weight (kDa)

5.5

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 50 - 88 3.7e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 115 - 409 7.7e-08 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 137 - 283 1.1e-11 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 438 - 482 4.1e-15 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 785
AccI GTMKAC 2 cut(s) 230, 901
AciI CCGC 1 cut(s) 1146
AclWI GGATC 4 cut(s) 28, 155, 425, 1461
AcsI RAATTY 6 cut(s) 109, 305, 362, 715, 1033, 1535
AcuI CTGAAG 3 cut(s) 614, 761, 1433
AcyI GRCGYC 1 cut(s) 254
AfaI GTAC 2 cut(s) 330, 1406
AfiI CCNNNNNNNGG 1 cut(s) 575
AhdI GACNNNNNGTC 1 cut(s) 1180
AhlI ACTAGT 1 cut(s) 1523
AjnI CCWGG 1 cut(s) 1113
AjuI GAANNNNNNNTTGG 2 cut(s) 938, 970
AluBI AGCT 8 cut(s) 46, 464, 487, 646, 795, 817, 995, 1051
AluI AGCT 8 cut(s) 46, 464, 487, 646, 795, 817, 995, 1051
Alw26I GTCTC 3 cut(s) 1033, 1125, 1360
AlwI GGATC 4 cut(s) 28, 155, 425, 1461
Ama87I CYCGRG 1 cut(s) 586
ApeKI GCWGC 1 cut(s) 792
ApoI RAATTY 6 cut(s) 109, 305, 362, 715, 1033, 1535
AseI ATTAAT 2 cut(s) 408, 804
AspLEI GCGC 1 cut(s) 438
AspS9I GGNCC 2 cut(s) 216, 394
AsuHPI GGTGA 4 cut(s) 100, 785, 1066, 1098
AsuII TTCGAA 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 586
AvaII GGWCC 2 cut(s) 216, 394
AxyI CCTNAGG 1 cut(s) 1155
BanI GGYRCC 1 cut(s) 785
BanII GRGCYC 1 cut(s) 1220
BbsI GAAGAC 4 cut(s) 683, 749, 1167, 1203
BbvCI CCTCAGC 1 cut(s) 906
BbvI GCAGC 1 cut(s) 804
BccI CCATC 3 cut(s) 231, 680, 764
BciT130I CCWGG 1 cut(s) 1115
BclI TGATCA 1 cut(s) 48
BcoDI GTCTC 3 cut(s) 1033, 1125, 1360
BcuI ACTAGT 1 cut(s) 1523
BfaI CTAG 5 cut(s) 203, 881, 930, 1524, 1543
BisI GCNGC 1 cut(s) 793
BlsI GCNGC 1 cut(s) 794
BmcAI AGTACT 1 cut(s) 1406
Bme1390I CCNGG 1 cut(s) 1115
Bme18I GGWCC 2 cut(s) 216, 394
BmeRI GACNNNNNGTC 1 cut(s) 1180
BmeT110I CYCGRG 1 cut(s) 586
BmgT120I GGNCC 2 cut(s) 216, 394
BmiI GGNNCC 2 cut(s) 787, 1506
BmrFI CCNGG 1 cut(s) 1115
BmsI GCATC 5 cut(s) 154, 196, 478, 581, 1306
BpiI GAAGAC 4 cut(s) 683, 749, 1167, 1203
BplI GAGNNNNNCTC 2 cut(s) 635, 667
BpmI CTGGAG 2 cut(s) 1136, 1296
Bpu10I CCTNAGC 1 cut(s) 906
Bpu14I TTCGAA 1 cut(s) 113
BpuEI CTTGAG 2 cut(s) 556, 1331
BsaHI GRCGYC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 1508
Bsc4I CCNNNNNNNGG 1 cut(s) 575
Bse1I ACTGG 3 cut(s) 531, 891, 969
Bse21I CCTNAGG 1 cut(s) 1155
Bse3DI GCAATG 1 cut(s) 445
BseBI CCWGG 1 cut(s) 1115
BseDI CCNNGG 1 cut(s) 1508
BseGI GGATG 3 cut(s) 394, 469, 691
BseLI CCNNNNNNNGG 1 cut(s) 575
BseMI GCAATG 1 cut(s) 445
BseMII CTCAG 4 cut(s) 920, 1169, 1212, 1287
BseNI ACTGG 3 cut(s) 531, 891, 969
BseRI GAGGAG 1 cut(s) 854
BseXI GCAGC 1 cut(s) 804
BseYI CCCAGC 2 cut(s) 464, 1074
BsgI GTGCAG 1 cut(s) 720
BshNI GGYRCC 1 cut(s) 785
BsiHKCI CYCGRG 1 cut(s) 586
BslFI GGGAC 1 cut(s) 716
BslI CCNNNNNNNGG 1 cut(s) 575
BsmAI GTCTC 3 cut(s) 1033, 1125, 1360
BsmBI CGTCTC 1 cut(s) 1033
BsmFI GGGAC 1 cut(s) 716
BsoBI CYCGRG 1 cut(s) 586
Bsp119I TTCGAA 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 1220
Bsp143I GATC 9 cut(s) 20, 48, 147, 417, 454, 545, 1103, 1258, 1453
BspACI CCGC 1 cut(s) 1146
BspCNI CTCAG 4 cut(s) 919, 1168, 1213, 1286
BspHI TCATGA 2 cut(s) 292, 1261
BspLI GGNNCC 2 cut(s) 787, 1506
BspPI GGATC 4 cut(s) 28, 155, 425, 1461
BspT104I TTCGAA 1 cut(s) 113
BspT107I GGYRCC 1 cut(s) 785
BsrDI GCAATG 1 cut(s) 445
BsrI ACTGG 3 cut(s) 531, 891, 969
BssECI CCNNGG 1 cut(s) 1508
BssMI GATC 9 cut(s) 20, 48, 147, 417, 454, 545, 1103, 1258, 1453
BssNI GRCGYC 1 cut(s) 254
BssT1I CCWWGG 1 cut(s) 1508
Bst2UI CCWGG 1 cut(s) 1115
Bst4CI ACNGT 6 cut(s) 62, 659, 682, 704, 941, 1044
Bst6I CTCTTC 3 cut(s) 515, 1206, 1224
BstACI GRCGYC 1 cut(s) 254
BstBI TTCGAA 1 cut(s) 113
BstC8I GCNNGC 2 cut(s) 790, 1023
BstDEI CTNAG 7 cut(s) 268, 460, 906, 1129, 1155, 1221, 1273
BstEII GGTNACC 2 cut(s) 88, 156
BstENI CCTNNNNNAGG 1 cut(s) 573
BstF5I GGATG 3 cut(s) 394, 469, 691
BstHHI GCGC 1 cut(s) 438
BstKTI GATC 9 cut(s) 23, 51, 150, 420, 457, 548, 1106, 1261, 1456
BstMAI GTCTC 3 cut(s) 1033, 1125, 1360
BstMBI GATC 9 cut(s) 20, 48, 147, 417, 454, 545, 1103, 1258, 1453
BstNI CCWGG 1 cut(s) 1115
BstPI GGTNACC 2 cut(s) 88, 156
BstSCI CCNGG 1 cut(s) 1113
BstV1I GCAGC 1 cut(s) 804
BstV2I GAAGAC 4 cut(s) 683, 749, 1167, 1203
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
Bsu36I CCTNAGG 1 cut(s) 1155
BtsCI GGATG 3 cut(s) 394, 469, 691
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 8 cut(s) 65, 157, 423, 524, 737, 976, 1191, 1281
Cac8I GCNNGC 2 cut(s) 790, 1023
CciI TCATGA 2 cut(s) 292, 1261
CfoI GCGC 1 cut(s) 438
Cfr13I GGNCC 2 cut(s) 216, 394
CseI GACGC 2 cut(s) 113, 243
Csp6I GTAC 2 cut(s) 329, 1405
CviAII CATG 6 cut(s) 293, 514, 605, 1226, 1262, 1372
CviQI GTAC 2 cut(s) 329, 1405
DdeI CTNAG 7 cut(s) 268, 460, 906, 1129, 1155, 1221, 1273
DpnI GATC 9 cut(s) 22, 50, 149, 419, 456, 547, 1105, 1260, 1455
DpnII GATC 9 cut(s) 20, 48, 147, 417, 454, 545, 1103, 1258, 1453
DraI TTTAAA 1 cut(s) 720
DriI GACNNNNNGTC 1 cut(s) 1180
Eam1104I CTCTTC 3 cut(s) 515, 1206, 1224
Eam1105I GACNNNNNGTC 1 cut(s) 1180
EarI CTCTTC 3 cut(s) 515, 1206, 1224
Eco130I CCWWGG 1 cut(s) 1508
Eco24I GRGCYC 1 cut(s) 1220
Eco47I GGWCC 2 cut(s) 216, 394
Eco57I CTGAAG 3 cut(s) 614, 761, 1433
Eco81I CCTNAGG 1 cut(s) 1155
Eco88I CYCGRG 1 cut(s) 586
Eco91I GGTNACC 2 cut(s) 88, 156
EcoNI CCTNNNNNAGG 1 cut(s) 573
EcoO109I RGGNCCY 1 cut(s) 216
EcoO65I GGTNACC 2 cut(s) 88, 156
EcoRI GAATTC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 1113
EcoT14I CCWWGG 1 cut(s) 1508
EcoT38I GRGCYC 1 cut(s) 1220
ErhI CCWWGG 1 cut(s) 1508
Esp3I CGTCTC 1 cut(s) 1033
FaeI CATG 6 cut(s) 296, 517, 608, 1229, 1265, 1375
FaqI GGGAC 1 cut(s) 716
FatI CATG 6 cut(s) 292, 513, 604, 1225, 1261, 1371
FauNDI CATATG 1 cut(s) 248
FbaI TGATCA 1 cut(s) 48
FblI GTMKAC 2 cut(s) 230, 901
Fnu4HI GCNGC 1 cut(s) 793
FokI GGATG 3 cut(s) 401, 456, 698
FriOI GRGCYC 1 cut(s) 1220
Fsp4HI GCNGC 1 cut(s) 793
FspBI CTAG 5 cut(s) 203, 881, 930, 1524, 1543
GlaI GCGC 1 cut(s) 437
GluI GCNGC 1 cut(s) 793
GsaI CCCAGC 2 cut(s) 468, 1078
GsuI CTGGAG 2 cut(s) 1136, 1296
HgaI GACGC 2 cut(s) 113, 243
HhaI GCGC 1 cut(s) 438
Hin1I GRCGYC 1 cut(s) 254
Hin1II CATG 6 cut(s) 296, 517, 608, 1229, 1265, 1375
Hin6I GCGC 1 cut(s) 436
HinP1I GCGC 1 cut(s) 436
HindIII AAGCTT 2 cut(s) 485, 815
HphI GGTGA 4 cut(s) 100, 785, 1066, 1098
Hpy166II GTNNAC 4 cut(s) 65, 231, 394, 902
Hpy188I TCNGA 9 cut(s) 43, 369, 594, 1168, 1204, 1222, 1240, 1258, 1294
Hpy8I GTNNAC 4 cut(s) 65, 231, 394, 902
HpyAV CCTTC 3 cut(s) 373, 1172, 1262
HpyCH4III ACNGT 6 cut(s) 62, 659, 682, 704, 941, 1044
HpyCH4IV ACGT 2 cut(s) 746, 1381
HpyCH4V TGCA 3 cut(s) 167, 572, 737
HpyF3I CTNAG 7 cut(s) 268, 460, 906, 1129, 1155, 1221, 1273
HpySE526I ACGT 2 cut(s) 746, 1381
Hsp92I GRCGYC 1 cut(s) 254
Hsp92II CATG 6 cut(s) 296, 517, 608, 1229, 1265, 1375
HspAI GCGC 1 cut(s) 436
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 9 cut(s) 20, 48, 147, 417, 454, 545, 1103, 1258, 1453
Lsp1109I GCAGC 1 cut(s) 804
LweI GCATC 5 cut(s) 154, 196, 478, 581, 1306
MaeI CTAG 5 cut(s) 203, 881, 930, 1524, 1543
MaeII ACGT 2 cut(s) 746, 1381
MaeIII GTNAC 7 cut(s) 88, 156, 341, 607, 973, 1092, 1338
MalI GATC 9 cut(s) 22, 50, 149, 419, 456, 547, 1105, 1260, 1455
MboI GATC 9 cut(s) 20, 48, 147, 417, 454, 545, 1103, 1258, 1453
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 1220
MluCI AATT 8 cut(s) 109, 305, 362, 551, 715, 805, 1033, 1535
MlyI GAGTC 4 cut(s) 598, 1127, 1157, 1193
MmeI TCCRAC 2 cut(s) 678, 1371
MseI TTAA 6 cut(s) 408, 719, 749, 804, 1467, 1499
MslI CAYNNNNRTG 2 cut(s) 577, 1461
MspR9I CCNGG 1 cut(s) 1115
MvaI CCWGG 1 cut(s) 1115
NdeI CATATG 1 cut(s) 248
NdeII GATC 9 cut(s) 20, 48, 147, 417, 454, 545, 1103, 1258, 1453
NlaIII CATG 6 cut(s) 296, 517, 608, 1229, 1265, 1375
NlaIV GGNNCC 2 cut(s) 787, 1506
NmuCI GTSAC 2 cut(s) 88, 341
NspV TTCGAA 1 cut(s) 113
PagI TCATGA 2 cut(s) 292, 1261
PfeI GAWTC 6 cut(s) 13, 38, 632, 1057, 1306, 1368
PfoI TCCNGGA 1 cut(s) 1113
PkrI GCNGC 1 cut(s) 794
PleI GAGTC 4 cut(s) 597, 1126, 1157, 1193
PpsI GAGTC 4 cut(s) 597, 1126, 1157, 1193
PpuMI RGGWCCY 1 cut(s) 216
PshBI ATTAAT 2 cut(s) 408, 804
Psp5II RGGWCCY 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 1113
PspEI GGTNACC 2 cut(s) 88, 156
PspFI CCCAGC 2 cut(s) 464, 1074
PspGI CCWGG 1 cut(s) 1113
PspN4I GGNNCC 2 cut(s) 787, 1506
PspPI GGNCC 2 cut(s) 216, 394
PspPPI RGGWCCY 1 cut(s) 216
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 2 cut(s) 330, 1406
RsaNI GTAC 2 cut(s) 329, 1405
RseI CAYNNNNRTG 2 cut(s) 577, 1461
SaqAI TTAA 6 cut(s) 408, 719, 749, 804, 1467, 1499
SatI GCNGC 1 cut(s) 793
Sau3AI GATC 9 cut(s) 20, 48, 147, 417, 454, 545, 1103, 1258, 1453
Sau96I GGNCC 2 cut(s) 216, 394
ScaI AGTACT 1 cut(s) 1406
SchI GAGTC 4 cut(s) 598, 1127, 1157, 1193
ScrFI CCNGG 1 cut(s) 1115
SduI GDGCHC 1 cut(s) 1220
SfaNI GCATC 5 cut(s) 154, 196, 478, 581, 1306
SfuI TTCGAA 1 cut(s) 113
SinI GGWCC 2 cut(s) 216, 394
SmiMI CAYNNNNRTG 2 cut(s) 577, 1461
SmlI CTYRAG 2 cut(s) 535, 1346
SmoI CTYRAG 2 cut(s) 535, 1346
SpeI ACTAGT 1 cut(s) 1523
Sse9I AATT 8 cut(s) 109, 305, 362, 551, 715, 805, 1033, 1535
SsiI CCGC 1 cut(s) 1146
SspI AATATT 1 cut(s) 565
SspMI CTAG 5 cut(s) 203, 881, 930, 1524, 1543
StyD4I CCNGG 1 cut(s) 1113
StyI CCWWGG 1 cut(s) 1508
TaaI ACNGT 6 cut(s) 62, 659, 682, 704, 941, 1044
TaiI ACGT 2 cut(s) 749, 1384
TaqI TCGA 2 cut(s) 113, 922
TasI AATT 8 cut(s) 109, 305, 362, 551, 715, 805, 1033, 1535
TatI WGTACW 2 cut(s) 328, 1404
TfiI GAWTC 6 cut(s) 13, 38, 632, 1057, 1306, 1368
Tru1I TTAA 6 cut(s) 408, 719, 749, 804, 1467, 1499
Tru9I TTAA 6 cut(s) 408, 719, 749, 804, 1467, 1499
TscAI CASTG 8 cut(s) 72, 157, 430, 531, 744, 976, 1191, 1281
TseFI GTSAC 2 cut(s) 88, 341
TseI GCWGC 1 cut(s) 792
Tsp45I GTSAC 2 cut(s) 88, 341
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 8 cut(s) 72, 157, 430, 531, 744, 976, 1191, 1281
VpaK11BI GGWCC 2 cut(s) 216, 394
VspI ATTAAT 2 cut(s) 408, 804
XagI CCTNNNNNAGG 1 cut(s) 573
XapI RAATTY 6 cut(s) 109, 305, 362, 715, 1033, 1535
XmiI GTMKAC 2 cut(s) 230, 901
XspI CTAG 5 cut(s) 203, 881, 930, 1524, 1543
ZrmI AGTACT 1 cut(s) 1406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.