Rroxscaffold_6G00412010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000062
Physical Location & Seq
Forward (+)
34591548 .. 34593038
1491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00412010.1

Sequence Viewer

Length: 366 bp
ATGGCTTCGCCTTCGACGACCAAAGATCGAAAACGGCGCCGCCTCGAATCGACCGACATCATCAACGTCGATTATCCTCCGGTGCTCGACGCAGGTTGTGGCGAGAAGAAAGATGATTGGGTGCCCAAAGCATCTTCCTCGAGCATTCCTTCGTCCGAAACTCTTTCGCAGTCGCCGATGATGTTCTTATCGAGCAAGAGCCCACCAAGTCCAACGCCGGCAGTTGATGTTGAATTCGAGAACCAATGTGCATCACACTGGCGCGAAGATGGTGCAGCCAAAGAACAGAGGACACGCAATGCAATGGAGATCCTTGTTGTAATGGCTGAAGAATGCTTGTTCTGTTTTACATGCTTCAAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.44

Weight (kDa)

5.18

Isoelectric Point (pI)

75.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 83
AccB1I GGYRCC 2 cut(s) 36, 121
AccII CGCG 1 cut(s) 264
AciI CCGC 1 cut(s) 40
AclWI GGATC 1 cut(s) 304
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 1 cut(s) 348
AcyI GRCGYC 1 cut(s) 37
AgsI TTSAA 2 cut(s) 233, 358
Alw21I GWGCWC 1 cut(s) 87
AlwI GGATC 1 cut(s) 304
Ama87I CYCGRG 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 233
AspLEI GCGC 2 cut(s) 39, 264
AvaI CYCGRG 1 cut(s) 139
BaeGI GKGCMC 1 cut(s) 126
BanI GGYRCC 2 cut(s) 36, 121
BanII GRGCYC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 287
BccI CCATC 1 cut(s) 263
BceAI ACGGC 1 cut(s) 50
BcgI CGANNNNNNTGC 4 cut(s) 120, 154, 254, 288
BfoI RGCGCY 1 cut(s) 40
BfuAI ACCTGC 1 cut(s) 83
BisI GCNGC 2 cut(s) 40, 276
BlsI GCNGC 2 cut(s) 41, 277
BmeT110I CYCGRG 1 cut(s) 139
BmiI GGNNCC 2 cut(s) 38, 123
BmsI GCATC 2 cut(s) 140, 260
BsaHI GRCGYC 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 263
Bse3DI GCAATG 2 cut(s) 304, 309
BseMI GCAATG 2 cut(s) 304, 309
BseNI ACTGG 1 cut(s) 263
BseSI GKGCMC 1 cut(s) 126
BseXI GCAGC 1 cut(s) 287
BsgI GTGCAG 1 cut(s) 294
Bsh1236I CGCG 1 cut(s) 264
Bsh1285I CGRYCG 1 cut(s) 54
BshNI GGYRCC 2 cut(s) 36, 121
BsiEI CGRYCG 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 139
BsiSI CCGG 2 cut(s) 80, 218
BsmI GAATGC 2 cut(s) 144, 338
BsoBI CYCGRG 1 cut(s) 139
Bsp1286I GDGCHC 3 cut(s) 87, 126, 203
Bsp143I GATC 2 cut(s) 25, 309
BspACI CCGC 1 cut(s) 40
BspFNI CGCG 1 cut(s) 264
BspLI GGNNCC 2 cut(s) 38, 123
BspMI ACCTGC 1 cut(s) 83
BspPI GGATC 1 cut(s) 304
BspT107I GGYRCC 2 cut(s) 36, 121
BsrDI GCAATG 2 cut(s) 304, 309
BsrFI RCCGGY 1 cut(s) 217
BsrI ACTGG 1 cut(s) 263
BssAI RCCGGY 1 cut(s) 217
BssMI GATC 2 cut(s) 25, 309
BssNI GRCGYC 1 cut(s) 37
BstACI GRCGYC 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 219
BstFNI CGCG 1 cut(s) 264
BstH2I RGCGCY 1 cut(s) 40
BstHHI GCGC 2 cut(s) 39, 264
BstKTI GATC 2 cut(s) 28, 312
BstMBI GATC 2 cut(s) 25, 309
BstMCI CGRYCG 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 354
BstSLI GKGCMC 1 cut(s) 126
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 287
BstX2I RGATCY 1 cut(s) 309
BstYI RGATCY 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 256
BveI ACCTGC 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 219
CfoI GCGC 2 cut(s) 39, 264
Cfr10I RCCGGY 1 cut(s) 217
CseI GACGC 1 cut(s) 98
CviAII CATG 1 cut(s) 351
CviJI RGCY 4 cut(s) 5, 201, 278, 326
CviKI_1 RGCY 4 cut(s) 5, 201, 278, 326
DinI GGCGCC 1 cut(s) 38
DpnI GATC 2 cut(s) 27, 311
DpnII GATC 2 cut(s) 25, 309
Eco24I GRGCYC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 348
Eco88I CYCGRG 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 233
EcoT38I GRGCYC 1 cut(s) 203
EgeI GGCGCC 1 cut(s) 38
EheI GGCGCC 1 cut(s) 38
FaeI CATG 1 cut(s) 354
FaiI YATR 2 cut(s) 352, 364
FatI CATG 1 cut(s) 350
Fnu4HI GCNGC 2 cut(s) 40, 276
FriOI GRGCYC 1 cut(s) 203
Fsp4HI GCNGC 2 cut(s) 40, 276
GlaI GCGC 2 cut(s) 38, 263
GluI GCNGC 2 cut(s) 40, 276
HaeII RGCGCY 1 cut(s) 40
HapII CCGG 2 cut(s) 80, 218
HgaI GACGC 1 cut(s) 98
HhaI GCGC 2 cut(s) 39, 264
Hin1I GRCGYC 1 cut(s) 37
Hin1II CATG 1 cut(s) 354
Hin6I GCGC 2 cut(s) 37, 262
HinP1I GCGC 2 cut(s) 37, 262
HinfI GANTC 1 cut(s) 47
HpaII CCGG 2 cut(s) 80, 218
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 1 cut(s) 238
Hpy99I CGWCG 3 cut(s) 19, 71, 92
HpyAV CCTTC 2 cut(s) 21, 159
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 3 cut(s) 251, 275, 302
HpySE526I ACGT 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 37
Hsp92II CATG 1 cut(s) 354
HspAI GCGC 2 cut(s) 37, 262
KasI GGCGCC 1 cut(s) 36
KroI GCCGGC 1 cut(s) 217
KroNI GCCGGC 1 cut(s) 219
Kzo9I GATC 2 cut(s) 25, 309
LpnPI CCDG 4 cut(s) 78, 93, 231, 244
Lsp1109I GCAGC 1 cut(s) 287
LweI GCATC 2 cut(s) 140, 260
MaeII ACGT 1 cut(s) 66
MalI GATC 2 cut(s) 27, 311
MboI GATC 2 cut(s) 25, 309
MboII GAAGA 4 cut(s) 118, 126, 278, 341
MflI RGATCY 1 cut(s) 309
MhlI GDGCHC 3 cut(s) 87, 126, 203
MluCI AATT 1 cut(s) 233
Mly113I GGCGCC 1 cut(s) 37
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 4 cut(s) 53, 87, 148, 282
MroNI GCCGGC 1 cut(s) 217
MspI CCGG 2 cut(s) 80, 218
Mva1269I GAATGC 2 cut(s) 144, 338
MvnI CGCG 1 cut(s) 264
NaeI GCCGGC 1 cut(s) 219
NarI GGCGCC 1 cut(s) 37
NdeII GATC 2 cut(s) 25, 309
NgoMIV GCCGGC 1 cut(s) 217
NlaIII CATG 1 cut(s) 354
NlaIV GGNNCC 2 cut(s) 38, 123
NspI RCATGY 1 cut(s) 354
PaeR7I CTCGAG 1 cut(s) 139
PcsI WCGNNNNNNNCGW 3 cut(s) 14, 51, 173
PctI GAATGC 2 cut(s) 144, 338
PdiI GCCGGC 1 cut(s) 219
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 2 cut(s) 41, 277
PluTI GGCGCC 1 cut(s) 40
PspN4I GGNNCC 2 cut(s) 38, 123
PspXI VCTCGAGB 1 cut(s) 139
PsuI RGATCY 1 cut(s) 309
SatI GCNGC 2 cut(s) 40, 276
Sau3AI GATC 2 cut(s) 25, 309
SduI GDGCHC 3 cut(s) 87, 126, 203
SetI ASST 2 cut(s) 69, 97
SfaNI GCATC 2 cut(s) 140, 260
SfoI GGCGCC 1 cut(s) 38
Sfr274I CTCGAG 1 cut(s) 139
SlaI CTCGAG 1 cut(s) 139
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
Sse9I AATT 1 cut(s) 233
SsiI CCGC 1 cut(s) 40
SspDI GGCGCC 1 cut(s) 36
TaiI ACGT 1 cut(s) 69
TaqI TCGA 9 cut(s) 14, 28, 45, 50, 69, 87, 140, 191, 237
TaqII GACCGA 1 cut(s) 68
TasI AATT 1 cut(s) 233
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 1 cut(s) 47
TscAI CASTG 1 cut(s) 263
TseI GCWGC 1 cut(s) 275
TspRI CASTG 1 cut(s) 263
XapI RAATTY 1 cut(s) 233
XceI RCATGY 1 cut(s) 354
XhoI CTCGAG 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.