Required for the assembly and or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1144 |
| AccB1I | GGYRCC | 1 cut(s) | 1144 |
| AciI | CCGC | 4 cut(s) | 518, 821, 858, 1365 |
| AclI | AACGTT | 1 cut(s) | 282 |
| AclWI | GGATC | 6 cut(s) | 76, 326, 689, 904, 1335, 1348 |
| AcsI | RAATTY | 4 cut(s) | 188, 305, 433, 1055 |
| AcuI | CTGAAG | 2 cut(s) | 62, 1308 |
| AfaI | GTAC | 2 cut(s) | 945, 1146 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 103, 546, 724, 1051 |
| AflII | CTTAAG | 1 cut(s) | 251 |
| AflIII | ACRYGT | 1 cut(s) | 157 |
| AgsI | TTSAA | 8 cut(s) | 268, 287, 655, 707, 926, 1136, 1141, 1219 |
| AhlI | ACTAGT | 1 cut(s) | 940 |
| AluBI | AGCT | 4 cut(s) | 228, 564, 762, 1187 |
| AluI | AGCT | 4 cut(s) | 228, 564, 762, 1187 |
| Alw21I | GWGCWC | 1 cut(s) | 475 |
| Alw26I | GTCTC | 5 cut(s) | 148, 318, 409, 530, 1157 |
| AlwI | GGATC | 6 cut(s) | 76, 326, 689, 904, 1335, 1348 |
| Ama87I | CYCGRG | 3 cut(s) | 468, 512, 1124 |
| ApeKI | GCWGC | 1 cut(s) | 564 |
| ApoI | RAATTY | 4 cut(s) | 188, 305, 433, 1055 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 290, 322 |
| AseI | ATTAAT | 1 cut(s) | 1086 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1005 |
| Asp718I | GGTACC | 1 cut(s) | 1144 |
| AspLEI | GCGC | 2 cut(s) | 633, 651 |
| AsuC2I | CCSGG | 1 cut(s) | 720 |
| AsuHPI | GGTGA | 4 cut(s) | 343, 442, 808, 847 |
| AsuII | TTCGAA | 1 cut(s) | 1113 |
| AvaI | CYCGRG | 3 cut(s) | 468, 512, 1124 |
| BamHI | GGATCC | 1 cut(s) | 1340 |
| BanI | GGYRCC | 1 cut(s) | 1144 |
| BauI | CACGAG | 1 cut(s) | 1322 |
| BbsI | GAAGAC | 1 cut(s) | 448 |
| Bbv12I | GWGCWC | 1 cut(s) | 475 |
| BbvI | GCAGC | 1 cut(s) | 551 |
| BccI | CCATC | 3 cut(s) | 132, 236, 1171 |
| BceAI | ACGGC | 1 cut(s) | 108 |
| BclI | TGATCA | 2 cut(s) | 601, 1387 |
| BcnI | CCSGG | 1 cut(s) | 720 |
| BcoDI | GTCTC | 5 cut(s) | 148, 318, 409, 530, 1157 |
| BcuI | ACTAGT | 1 cut(s) | 940 |
| BfaI | CTAG | 3 cut(s) | 902, 941, 1184 |
| BfmI | CTRYAG | 2 cut(s) | 233, 445 |
| BfoI | RGCGCY | 1 cut(s) | 652 |
| BfrI | CTTAAG | 1 cut(s) | 251 |
| BglII | AGATCT | 1 cut(s) | 349 |
| BisI | GCNGC | 1 cut(s) | 565 |
| BlsI | GCNGC | 1 cut(s) | 566 |
| Bme1390I | CCNGG | 1 cut(s) | 720 |
| BmeT110I | CYCGRG | 3 cut(s) | 468, 512, 1124 |
| BmiI | GGNNCC | 3 cut(s) | 1101, 1146, 1342 |
| BmrFI | CCNGG | 1 cut(s) | 720 |
| BmsI | GCATC | 5 cut(s) | 387, 451, 517, 747, 808 |
| BpiI | GAAGAC | 1 cut(s) | 448 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 371, 403 |
| BpmI | CTGGAG | 2 cut(s) | 166, 172 |
| Bpu14I | TTCGAA | 1 cut(s) | 1113 |
| BpuEI | CTTGAG | 2 cut(s) | 482, 680 |
| BpuMI | CCSGG | 1 cut(s) | 720 |
| Bsa29I | ATCGAT | 2 cut(s) | 321, 804 |
| BsaBI | GATNNNNATC | 1 cut(s) | 246 |
| BsaI | GGTCTC | 1 cut(s) | 530 |
| BsaJI | CCNNGG | 2 cut(s) | 168, 718 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 164, 194 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 103, 546, 724, 1051 |
| Bse1I | ACTGG | 3 cut(s) | 183, 729, 1344 |
| Bse3DI | GCAATG | 2 cut(s) | 1105, 1316 |
| Bse8I | GATNNNNATC | 1 cut(s) | 246 |
| BseCI | ATCGAT | 2 cut(s) | 321, 804 |
| BseDI | CCNNGG | 2 cut(s) | 168, 718 |
| BseGI | GGATG | 3 cut(s) | 388, 402, 832 |
| BseJI | GATNNNNATC | 1 cut(s) | 246 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 103, 546, 724, 1051 |
| BseMI | GCAATG | 2 cut(s) | 1105, 1316 |
| BseMII | CTCAG | 4 cut(s) | 376, 402, 747, 962 |
| BseNI | ACTGG | 3 cut(s) | 183, 729, 1344 |
| BseRI | GAGGAG | 2 cut(s) | 456, 1094 |
| BseXI | GCAGC | 1 cut(s) | 551 |
| BshNI | GGYRCC | 1 cut(s) | 1144 |
| BshVI | ATCGAT | 2 cut(s) | 321, 804 |
| BsiHKAI | GWGCWC | 1 cut(s) | 475 |
| BsiHKCI | CYCGRG | 3 cut(s) | 468, 512, 1124 |
| BsiSI | CCGG | 1 cut(s) | 720 |
| BslFI | GGGAC | 2 cut(s) | 80, 562 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 103, 546, 724, 1051 |
| BsmAI | GTCTC | 5 cut(s) | 148, 318, 409, 530, 1157 |
| BsmFI | GGGAC | 2 cut(s) | 80, 562 |
| Bso31I | GGTCTC | 1 cut(s) | 530 |
| BsoBI | CYCGRG | 3 cut(s) | 468, 512, 1124 |
| Bsp119I | TTCGAA | 1 cut(s) | 1113 |
| Bsp1286I | GDGCHC | 1 cut(s) | 475 |
| BspACI | CCGC | 4 cut(s) | 518, 821, 858, 1365 |
| BspCNI | CTCAG | 4 cut(s) | 375, 401, 748, 961 |
| BspDI | ATCGAT | 2 cut(s) | 321, 804 |
| BspHI | TCATGA | 2 cut(s) | 196, 604 |
| BspLI | GGNNCC | 3 cut(s) | 1101, 1146, 1342 |
| BspMAI | CTGCAG | 1 cut(s) | 237 |
| BspPI | GGATC | 6 cut(s) | 76, 326, 689, 904, 1335, 1348 |
| BspQI | GCTCTTC | 2 cut(s) | 17, 282 |
| BspT104I | TTCGAA | 1 cut(s) | 1113 |
| BspT107I | GGYRCC | 1 cut(s) | 1144 |
| BspTI | CTTAAG | 1 cut(s) | 251 |
| BspTNI | GGTCTC | 1 cut(s) | 530 |
| BsrDI | GCAATG | 2 cut(s) | 1105, 1316 |
| BsrI | ACTGG | 3 cut(s) | 183, 729, 1344 |
| BssECI | CCNNGG | 2 cut(s) | 168, 718 |
| BssSI | CACGAG | 1 cut(s) | 1322 |
| BssT1I | CCWWGG | 1 cut(s) | 168 |
| Bst2BI | CACGAG | 1 cut(s) | 1322 |
| Bst4CI | ACNGT | 4 cut(s) | 871, 1156, 1208, 1284 |
| Bst6I | CTCTTC | 3 cut(s) | 17, 282, 1052 |
| BstAFI | CTTAAG | 1 cut(s) | 251 |
| BstBI | TTCGAA | 1 cut(s) | 1113 |
| BstC8I | GCNNGC | 3 cut(s) | 971, 975, 1067 |
| BstDEI | CTNAG | 5 cut(s) | 362, 388, 644, 756, 948 |
| BstF5I | GGATG | 3 cut(s) | 388, 402, 832 |
| BstH2I | RGCGCY | 1 cut(s) | 652 |
| BstHHI | GCGC | 2 cut(s) | 633, 651 |
| BstMAI | GTCTC | 5 cut(s) | 148, 318, 409, 530, 1157 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 406, 470 |
| BstNSI | RCATGY | 1 cut(s) | 977 |
| BstSCI | CCNGG | 1 cut(s) | 718 |
| BstSFI | CTRYAG | 2 cut(s) | 233, 445 |
| BstV1I | GCAGC | 1 cut(s) | 551 |
| BstV2I | GAAGAC | 1 cut(s) | 448 |
| BstX2I | RGATCY | 4 cut(s) | 81, 349, 694, 1340 |
| BstYI | RGATCY | 4 cut(s) | 81, 349, 694, 1340 |
| Bsu15I | ATCGAT | 2 cut(s) | 321, 804 |
| BsuTUI | ATCGAT | 2 cut(s) | 321, 804 |
| BtgZI | GCGATG | 1 cut(s) | 151 |
| BtsCI | GGATG | 3 cut(s) | 388, 402, 832 |
| BtsIMutI | CAGTG | 3 cut(s) | 741, 867, 1161 |
| Cac8I | GCNNGC | 3 cut(s) | 971, 975, 1067 |
| CciI | TCATGA | 2 cut(s) | 196, 604 |
| CfoI | GCGC | 2 cut(s) | 633, 651 |
| ClaI | ATCGAT | 2 cut(s) | 321, 804 |
| Csp6I | GTAC | 2 cut(s) | 944, 1145 |
| CviJI | RGCY | 7 cut(s) | 5, 123, 228, 564, 762, 1187, 1315 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 123, 228, 564, 762, 1187, 1315 |
| CviQI | GTAC | 2 cut(s) | 944, 1145 |
| DdeI | CTNAG | 5 cut(s) | 362, 388, 644, 756, 948 |
| Eam1104I | CTCTTC | 3 cut(s) | 17, 282, 1052 |
| EarI | CTCTTC | 3 cut(s) | 17, 282, 1052 |
| Eco130I | CCWWGG | 1 cut(s) | 168 |
| Eco31I | GGTCTC | 1 cut(s) | 530 |
| Eco57I | CTGAAG | 2 cut(s) | 62, 1308 |
| Eco88I | CYCGRG | 3 cut(s) | 468, 512, 1124 |
| EcoT14I | CCWWGG | 1 cut(s) | 168 |
| EcoT22I | ATGCAT | 1 cut(s) | 510 |
| ErhI | CCWWGG | 1 cut(s) | 168 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 553, 585 |
| FaqI | GGGAC | 2 cut(s) | 80, 562 |
| FauI | CCCGC | 1 cut(s) | 1358 |
| FbaI | TGATCA | 2 cut(s) | 601, 1387 |
| Fnu4HI | GCNGC | 1 cut(s) | 565 |
| FokI | GGATG | 3 cut(s) | 395, 409, 839 |
| Fsp4HI | GCNGC | 1 cut(s) | 565 |
| FspBI | CTAG | 3 cut(s) | 902, 941, 1184 |
| GlaI | GCGC | 2 cut(s) | 632, 650 |
| GluI | GCNGC | 1 cut(s) | 565 |
| GsuI | CTGGAG | 2 cut(s) | 166, 172 |
| HaeII | RGCGCY | 1 cut(s) | 652 |
| HapII | CCGG | 1 cut(s) | 720 |
| HhaI | GCGC | 2 cut(s) | 633, 651 |
| Hin6I | GCGC | 2 cut(s) | 631, 649 |
| HinP1I | GCGC | 2 cut(s) | 631, 649 |
| HincII | GTYRAC | 1 cut(s) | 33 |
| HindII | GTYRAC | 1 cut(s) | 33 |
| HpaII | CCGG | 1 cut(s) | 720 |
| HphI | GGTGA | 4 cut(s) | 343, 442, 808, 847 |
| Hpy166II | GTNNAC | 4 cut(s) | 33, 341, 799, 1349 |
| Hpy8I | GTNNAC | 4 cut(s) | 33, 341, 799, 1349 |
| Hpy99I | CGWCG | 1 cut(s) | 581 |
| HpyAV | CCTTC | 3 cut(s) | 1069, 1135, 1283 |
| HpyCH4III | ACNGT | 4 cut(s) | 871, 1156, 1208, 1284 |
| HpyCH4IV | ACGT | 5 cut(s) | 159, 282, 337, 921, 1251 |
| HpyCH4V | TGCA | 5 cut(s) | 235, 508, 791, 973, 1321 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 406, 470 |
| HpyF3I | CTNAG | 5 cut(s) | 362, 388, 644, 756, 948 |
| HpySE526I | ACGT | 5 cut(s) | 159, 282, 337, 921, 1251 |
| HspAI | GCGC | 2 cut(s) | 631, 649 |
| KpnI | GGTACC | 1 cut(s) | 1148 |
| Ksp22I | TGATCA | 2 cut(s) | 601, 1387 |
| LguI | GCTCTTC | 2 cut(s) | 17, 282 |
| LmnI | GCTCC | 1 cut(s) | 469 |
| Lsp1109I | GCAGC | 1 cut(s) | 551 |
| LweI | GCATC | 5 cut(s) | 387, 451, 517, 747, 808 |
| MaeI | CTAG | 3 cut(s) | 902, 941, 1184 |
| MaeII | ACGT | 5 cut(s) | 159, 282, 337, 921, 1251 |
| MaeIII | GTNAC | 2 cut(s) | 296, 639 |
| MboII | GAAGA | 9 cut(s) | 34, 224, 299, 448, 704, 842, 984, 1039, 1231 |
| MfeI | CAATTG | 2 cut(s) | 476, 1136 |
| MflI | RGATCY | 4 cut(s) | 81, 349, 694, 1340 |
| MhlI | GDGCHC | 1 cut(s) | 475 |
| MluCI | AATT | 9 cut(s) | 188, 305, 433, 476, 581, 878, 1055, 1136, 1299 |
| MlyI | GAGTC | 6 cut(s) | 173, 209, 380, 418, 544, 671 |
| MmeI | TCCRAC | 2 cut(s) | 183, 1034 |
| Mph1103I | ATGCAT | 1 cut(s) | 510 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1005 |
| MseI | TTAA | 7 cut(s) | 252, 345, 372, 437, 584, 1086, 1232 |
| MslI | CAYNNNNRTG | 2 cut(s) | 603, 1326 |
| MspCI | CTTAAG | 1 cut(s) | 251 |
| MspI | CCGG | 1 cut(s) | 720 |
| MspR9I | CCNGG | 1 cut(s) | 720 |
| MunI | CAATTG | 2 cut(s) | 476, 1136 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 406, 470 |
| NciI | CCSGG | 1 cut(s) | 720 |
| NlaIV | GGNNCC | 3 cut(s) | 1101, 1146, 1342 |
| NmuCI | GTSAC | 2 cut(s) | 296, 639 |
| NsiI | ATGCAT | 1 cut(s) | 510 |
| NspI | RCATGY | 1 cut(s) | 977 |
| NspV | TTCGAA | 1 cut(s) | 1113 |
| PaeI | GCATGC | 1 cut(s) | 977 |
| PaeR7I | CTCGAG | 3 cut(s) | 468, 512, 1124 |
| PagI | TCATGA | 2 cut(s) | 196, 604 |
| PciSI | GCTCTTC | 2 cut(s) | 17, 282 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1005 |
| PfeI | GAWTC | 9 cut(s) | 38, 107, 264, 833, 926, 989, 1033, 1115, 1273 |
| PkrI | GCNGC | 1 cut(s) | 566 |
| PleI | GAGTC | 6 cut(s) | 173, 208, 380, 418, 544, 670 |
| PpsI | GAGTC | 6 cut(s) | 173, 208, 380, 418, 544, 670 |
| PshBI | ATTAAT | 1 cut(s) | 1086 |
| Psp1406I | AACGTT | 1 cut(s) | 282 |
| PspN4I | GGNNCC | 3 cut(s) | 1101, 1146, 1342 |
| PspXI | VCTCGAGB | 1 cut(s) | 468 |
| PstI | CTGCAG | 1 cut(s) | 237 |
| PsuI | RGATCY | 4 cut(s) | 81, 349, 694, 1340 |
| RsaI | GTAC | 2 cut(s) | 945, 1146 |
| RsaNI | GTAC | 2 cut(s) | 944, 1145 |
| RseI | CAYNNNNRTG | 2 cut(s) | 603, 1326 |
| SapI | GCTCTTC | 2 cut(s) | 17, 282 |
| SaqAI | TTAA | 7 cut(s) | 252, 345, 372, 437, 584, 1086, 1232 |
| SatI | GCNGC | 1 cut(s) | 565 |
| SchI | GAGTC | 6 cut(s) | 173, 209, 380, 418, 544, 671 |
| ScrFI | CCNGG | 1 cut(s) | 720 |
| SduI | GDGCHC | 1 cut(s) | 475 |
| SfaNI | GCATC | 5 cut(s) | 387, 451, 517, 747, 808 |
| SfcI | CTRYAG | 2 cut(s) | 233, 445 |
| Sfr274I | CTCGAG | 3 cut(s) | 468, 512, 1124 |
| SfuI | TTCGAA | 1 cut(s) | 1113 |
| SlaI | CTCGAG | 3 cut(s) | 468, 512, 1124 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 603, 1326 |
| SmlI | CTYRAG | 6 cut(s) | 251, 468, 497, 512, 659, 1124 |
| SmoI | CTYRAG | 6 cut(s) | 251, 468, 497, 512, 659, 1124 |
| SpeI | ACTAGT | 1 cut(s) | 940 |
| SphI | GCATGC | 1 cut(s) | 977 |
| Sse9I | AATT | 9 cut(s) | 188, 305, 433, 476, 581, 878, 1055, 1136, 1299 |
| SsiI | CCGC | 4 cut(s) | 518, 821, 858, 1365 |
| SspI | AATATT | 1 cut(s) | 376 |
| SspMI | CTAG | 3 cut(s) | 902, 941, 1184 |
| StyD4I | CCNGG | 1 cut(s) | 718 |
| StyI | CCWWGG | 1 cut(s) | 168 |
| TaaI | ACNGT | 4 cut(s) | 871, 1156, 1208, 1284 |
| TaiI | ACGT | 5 cut(s) | 162, 285, 340, 924, 1254 |
| TasI | AATT | 9 cut(s) | 188, 305, 433, 476, 581, 878, 1055, 1136, 1299 |
| TfiI | GAWTC | 9 cut(s) | 38, 107, 264, 833, 926, 989, 1033, 1115, 1273 |
| Tru1I | TTAA | 7 cut(s) | 252, 345, 372, 437, 584, 1086, 1232 |
| Tru9I | TTAA | 7 cut(s) | 252, 345, 372, 437, 584, 1086, 1232 |
| TscAI | CASTG | 3 cut(s) | 748, 874, 1161 |
| TseFI | GTSAC | 2 cut(s) | 296, 639 |
| TseI | GCWGC | 1 cut(s) | 564 |
| Tsp45I | GTSAC | 2 cut(s) | 296, 639 |
| TspDTI | ATGAA | 5 cut(s) | 624, 754, 843, 1251, 1360 |
| TspGWI | ACGGA | 6 cut(s) | 50, 100, 546, 627, 863, 950 |
| TspRI | CASTG | 3 cut(s) | 748, 874, 1161 |
| Vha464I | CTTAAG | 1 cut(s) | 251 |
| VspI | ATTAAT | 1 cut(s) | 1086 |
| XapI | RAATTY | 4 cut(s) | 188, 305, 433, 1055 |
| XbaI | TCTAGA | 1 cut(s) | 901 |
| XceI | RCATGY | 1 cut(s) | 977 |
| XhoI | CTCGAG | 3 cut(s) | 468, 512, 1124 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1005 |
| XspI | CTAG | 3 cut(s) | 902, 941, 1184 |
| Zsp2I | ATGCAT | 1 cut(s) | 510 |