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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 152, 252 |
| AciI | CCGC | 3 cut(s) | 47, 980, 1035 |
| AclWI | GGATC | 2 cut(s) | 77, 206 |
| AcsI | RAATTY | 3 cut(s) | 377, 472, 1229 |
| AfaI | GTAC | 3 cut(s) | 261, 597, 949 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 506 |
| AgsI | TTSAA | 8 cut(s) | 377, 466, 602, 667, 743, 844, 1069, 1229 |
| AjnI | CCWGG | 2 cut(s) | 215, 801 |
| AluBI | AGCT | 5 cut(s) | 435, 469, 739, 847, 889 |
| AluI | AGCT | 5 cut(s) | 435, 469, 739, 847, 889 |
| Alw26I | GTCTC | 3 cut(s) | 527, 1007, 1068 |
| AlwI | GGATC | 2 cut(s) | 77, 206 |
| ApeKI | GCWGC | 3 cut(s) | 588, 889, 1094 |
| ApoI | RAATTY | 3 cut(s) | 377, 472, 1229 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1207 |
| AspLEI | GCGC | 1 cut(s) | 658 |
| AsuHPI | GGTGA | 5 cut(s) | 704, 894, 1045, 1147, 1163 |
| AsuII | TTCGAA | 1 cut(s) | 1201 |
| BbsI | GAAGAC | 2 cut(s) | 293, 674 |
| BbvI | GCAGC | 3 cut(s) | 575, 876, 1106 |
| BccI | CCATC | 4 cut(s) | 153, 332, 611, 1081 |
| BciT130I | CCWGG | 2 cut(s) | 217, 803 |
| BcoDI | GTCTC | 3 cut(s) | 527, 1007, 1068 |
| BfaI | CTAG | 1 cut(s) | 191 |
| BfmI | CTRYAG | 1 cut(s) | 612 |
| BisI | GCNGC | 4 cut(s) | 47, 589, 890, 1095 |
| BlpI | GCTNAGC | 1 cut(s) | 277 |
| BlsI | GCNGC | 4 cut(s) | 48, 590, 891, 1096 |
| Bme1390I | CCNGG | 2 cut(s) | 217, 803 |
| BmrFI | CCNGG | 2 cut(s) | 217, 803 |
| BmsI | GCATC | 2 cut(s) | 76, 625 |
| BpiI | GAAGAC | 2 cut(s) | 293, 674 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 311, 343 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 277 |
| Bpu14I | TTCGAA | 1 cut(s) | 1201 |
| BpuEI | CTTGAG | 4 cut(s) | 509, 878, 1028, 1211 |
| BsaI | GGTCTC | 1 cut(s) | 1007 |
| BsaJI | CCNNGG | 2 cut(s) | 215, 801 |
| BsaWI | WCCGGW | 1 cut(s) | 311 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 506 |
| Bse1I | ACTGG | 2 cut(s) | 33, 459 |
| BseBI | CCWGG | 2 cut(s) | 217, 803 |
| BseDI | CCNNGG | 2 cut(s) | 215, 801 |
| BseGI | GGATG | 1 cut(s) | 235 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 506 |
| BseMII | CTCAG | 2 cut(s) | 291, 722 |
| BseNI | ACTGG | 2 cut(s) | 33, 459 |
| BseRI | GAGGAG | 1 cut(s) | 1187 |
| BseXI | GCAGC | 3 cut(s) | 575, 876, 1106 |
| Bsh1285I | CGRYCG | 1 cut(s) | 256 |
| BsiEI | CGRYCG | 1 cut(s) | 256 |
| BsiSI | CCGG | 1 cut(s) | 312 |
| BslFI | GGGAC | 1 cut(s) | 784 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 506 |
| BsmAI | GTCTC | 3 cut(s) | 527, 1007, 1068 |
| BsmFI | GGGAC | 1 cut(s) | 784 |
| BsmI | GAATGC | 1 cut(s) | 144 |
| Bso31I | GGTCTC | 1 cut(s) | 1007 |
| Bsp119I | TTCGAA | 1 cut(s) | 1201 |
| Bsp143I | GATC | 4 cut(s) | 69, 211, 382, 899 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 277 |
| BspACI | CCGC | 3 cut(s) | 47, 980, 1035 |
| BspCNI | CTCAG | 2 cut(s) | 290, 721 |
| BspPI | GGATC | 2 cut(s) | 77, 206 |
| BspT104I | TTCGAA | 1 cut(s) | 1201 |
| BspTNI | GGTCTC | 1 cut(s) | 1007 |
| BsrI | ACTGG | 2 cut(s) | 33, 459 |
| BssECI | CCNNGG | 2 cut(s) | 215, 801 |
| BssMI | GATC | 4 cut(s) | 69, 211, 382, 899 |
| Bst2UI | CCWGG | 2 cut(s) | 217, 803 |
| Bst4CI | ACNGT | 4 cut(s) | 257, 365, 716, 1018 |
| BstBI | TTCGAA | 1 cut(s) | 1201 |
| BstC8I | GCNNGC | 2 cut(s) | 51, 819 |
| BstDEI | CTNAG | 5 cut(s) | 277, 485, 501, 708, 925 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 504 |
| BstF5I | GGATG | 1 cut(s) | 235 |
| BstHHI | GCGC | 1 cut(s) | 658 |
| BstKTI | GATC | 4 cut(s) | 72, 214, 385, 902 |
| BstMAI | GTCTC | 3 cut(s) | 527, 1007, 1068 |
| BstMBI | GATC | 4 cut(s) | 69, 211, 382, 899 |
| BstMCI | CGRYCG | 1 cut(s) | 256 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 16, 46, 886 |
| BstNI | CCWGG | 2 cut(s) | 217, 803 |
| BstSCI | CCNGG | 2 cut(s) | 215, 801 |
| BstSFI | CTRYAG | 1 cut(s) | 612 |
| BstV1I | GCAGC | 3 cut(s) | 575, 876, 1106 |
| BstV2I | GAAGAC | 2 cut(s) | 293, 674 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 454 |
| BtsCI | GGATG | 1 cut(s) | 235 |
| BtsI | GCAGTG | 1 cut(s) | 351 |
| BtsIMutI | CAGTG | 3 cut(s) | 79, 351, 452 |
| Cac8I | GCNNGC | 2 cut(s) | 51, 819 |
| CfoI | GCGC | 1 cut(s) | 658 |
| Csp6I | GTAC | 3 cut(s) | 260, 596, 948 |
| CviAII | CATG | 5 cut(s) | 442, 536, 632, 757, 995 |
| CviQI | GTAC | 3 cut(s) | 260, 596, 948 |
| DdeI | CTNAG | 5 cut(s) | 277, 485, 501, 708, 925 |
| DpnI | GATC | 4 cut(s) | 71, 213, 384, 901 |
| DpnII | GATC | 4 cut(s) | 69, 211, 382, 899 |
| EciI | GGCGGA | 1 cut(s) | 1024 |
| Eco31I | GGTCTC | 1 cut(s) | 1007 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 504 |
| EcoRII | CCWGG | 2 cut(s) | 215, 801 |
| FaeI | CATG | 5 cut(s) | 445, 539, 635, 760, 998 |
| FaqI | GGGAC | 1 cut(s) | 784 |
| FatI | CATG | 5 cut(s) | 441, 535, 631, 756, 994 |
| FauNDI | CATATG | 1 cut(s) | 170 |
| FblI | GTMKAC | 2 cut(s) | 152, 252 |
| Fnu4HI | GCNGC | 4 cut(s) | 47, 589, 890, 1095 |
| FokI | GGATG | 1 cut(s) | 242 |
| Fsp4HI | GCNGC | 4 cut(s) | 47, 589, 890, 1095 |
| FspBI | CTAG | 1 cut(s) | 191 |
| GlaI | GCGC | 1 cut(s) | 657 |
| GluI | GCNGC | 4 cut(s) | 47, 589, 890, 1095 |
| HapII | CCGG | 1 cut(s) | 312 |
| HhaI | GCGC | 1 cut(s) | 658 |
| Hin1II | CATG | 5 cut(s) | 445, 539, 635, 760, 998 |
| Hin6I | GCGC | 1 cut(s) | 656 |
| HinP1I | GCGC | 1 cut(s) | 656 |
| HincII | GTYRAC | 1 cut(s) | 253 |
| HindII | GTYRAC | 1 cut(s) | 253 |
| HindIII | AAGCTT | 2 cut(s) | 433, 737 |
| HinfI | GANTC | 7 cut(s) | 233, 346, 563, 790, 1065, 1076, 1198 |
| HpaII | CCGG | 1 cut(s) | 312 |
| HphI | GGTGA | 5 cut(s) | 704, 894, 1045, 1147, 1163 |
| Hpy166II | GTNNAC | 7 cut(s) | 153, 184, 253, 260, 394, 646, 948 |
| Hpy188I | TCNGA | 8 cut(s) | 406, 478, 711, 795, 961, 1081, 1128, 1238 |
| Hpy188III | TCNNGA | 5 cut(s) | 191, 412, 554, 895, 1045 |
| Hpy8I | GTNNAC | 7 cut(s) | 153, 184, 253, 260, 394, 646, 948 |
| Hpy99I | CGWCG | 2 cut(s) | 203, 206 |
| HpyAV | CCTTC | 4 cut(s) | 121, 125, 1108, 1197 |
| HpyCH4III | ACNGT | 4 cut(s) | 257, 365, 716, 1018 |
| HpyCH4IV | ACGT | 1 cut(s) | 671 |
| HpyCH4V | TGCA | 2 cut(s) | 89, 638 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 16, 46, 886 |
| HpyF3I | CTNAG | 5 cut(s) | 277, 485, 501, 708, 925 |
| HpySE526I | ACGT | 1 cut(s) | 671 |
| Hsp92II | CATG | 5 cut(s) | 445, 539, 635, 760, 998 |
| HspAI | GCGC | 1 cut(s) | 656 |
| Kzo9I | GATC | 4 cut(s) | 69, 211, 382, 899 |
| LmnI | GCTCC | 1 cut(s) | 736 |
| Lsp1109I | GCAGC | 3 cut(s) | 575, 876, 1106 |
| LweI | GCATC | 2 cut(s) | 76, 625 |
| MaeI | CTAG | 1 cut(s) | 191 |
| MaeII | ACGT | 1 cut(s) | 671 |
| MaeIII | GTNAC | 4 cut(s) | 58, 98, 538, 1135 |
| MalI | GATC | 4 cut(s) | 71, 213, 384, 901 |
| MboI | GATC | 4 cut(s) | 69, 211, 382, 899 |
| MboII | GAAGA | 9 cut(s) | 175, 293, 377, 614, 679, 707, 799, 845, 980 |
| MfeI | CAATTG | 1 cut(s) | 868 |
| MlyI | GAGTC | 2 cut(s) | 227, 1070 |
| MmeI | TCCRAC | 2 cut(s) | 143, 323 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1207 |
| MseI | TTAA | 2 cut(s) | 674, 686 |
| MspI | CCGG | 1 cut(s) | 312 |
| MspR9I | CCNGG | 2 cut(s) | 217, 803 |
| MunI | CAATTG | 1 cut(s) | 868 |
| Mva1269I | GAATGC | 1 cut(s) | 144 |
| MvaI | CCWGG | 2 cut(s) | 217, 803 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 16, 46, 886 |
| NdeI | CATATG | 1 cut(s) | 170 |
| NdeII | GATC | 4 cut(s) | 69, 211, 382, 899 |
| NlaIII | CATG | 5 cut(s) | 445, 539, 635, 760, 998 |
| NmuCI | GTSAC | 2 cut(s) | 98, 1135 |
| NspV | TTCGAA | 1 cut(s) | 1201 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 207 |
| PctI | GAATGC | 1 cut(s) | 144 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1207 |
| PfeI | GAWTC | 5 cut(s) | 346, 563, 790, 1065, 1198 |
| PkrI | GCNGC | 4 cut(s) | 48, 590, 891, 1096 |
| PleI | GAGTC | 2 cut(s) | 227, 1070 |
| PpsI | GAGTC | 2 cut(s) | 227, 1070 |
| Psp6I | CCWGG | 2 cut(s) | 215, 801 |
| PspGI | CCWGG | 2 cut(s) | 215, 801 |
| RsaI | GTAC | 3 cut(s) | 261, 597, 949 |
| RsaNI | GTAC | 3 cut(s) | 260, 596, 948 |
| SalI | GTCGAC | 1 cut(s) | 251 |
| SaqAI | TTAA | 2 cut(s) | 674, 686 |
| SatI | GCNGC | 4 cut(s) | 47, 589, 890, 1095 |
| Sau3AI | GATC | 4 cut(s) | 69, 211, 382, 899 |
| SchI | GAGTC | 2 cut(s) | 227, 1070 |
| ScrFI | CCNGG | 2 cut(s) | 217, 803 |
| SfaNI | GCATC | 2 cut(s) | 76, 625 |
| SfcI | CTRYAG | 1 cut(s) | 612 |
| SfuI | TTCGAA | 1 cut(s) | 1201 |
| SmlI | CTYRAG | 4 cut(s) | 524, 893, 1043, 1190 |
| SmoI | CTYRAG | 4 cut(s) | 524, 893, 1043, 1190 |
| SsiI | CCGC | 3 cut(s) | 47, 980, 1035 |
| SspMI | CTAG | 1 cut(s) | 191 |
| StyD4I | CCNGG | 2 cut(s) | 215, 801 |
| TaaI | ACNGT | 4 cut(s) | 257, 365, 716, 1018 |
| TaiI | ACGT | 1 cut(s) | 674 |
| TaqI | TCGA | 6 cut(s) | 198, 252, 990, 1201, 1211, 1222 |
| TatI | WGTACW | 3 cut(s) | 259, 595, 947 |
| TauI | GCSGC | 1 cut(s) | 49 |
| TfiI | GAWTC | 5 cut(s) | 346, 563, 790, 1065, 1198 |
| Tru1I | TTAA | 2 cut(s) | 674, 686 |
| Tru9I | TTAA | 2 cut(s) | 674, 686 |
| TscAI | CASTG | 3 cut(s) | 79, 358, 459 |
| TseFI | GTSAC | 2 cut(s) | 98, 1135 |
| TseI | GCWGC | 3 cut(s) | 588, 889, 1094 |
| Tsp45I | GTSAC | 2 cut(s) | 98, 1135 |
| TspDTI | ATGAA | 8 cut(s) | 278, 293, 430, 576, 845, 951, 981, 1011 |
| TspRI | CASTG | 3 cut(s) | 79, 358, 459 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 504 |
| XapI | RAATTY | 3 cut(s) | 377, 472, 1229 |
| XbaI | TCTAGA | 1 cut(s) | 190 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 454 |
| XmiI | GTMKAC | 2 cut(s) | 152, 252 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1207 |
| XspI | CTAG | 1 cut(s) | 191 |