Rh4DG208900

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000062
Physical Location & Seq
Forward (+)
40336674 .. 40340025
3352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG208900.1

Sequence Viewer

Length: 819 bp
ATGGCAAGAAGAATGGCGTGGGAAGCTATACATAAAGACAAGATCAGTCAATTACCGGATGATACTCTCTCTCACATCCTTTCTCTCCTTCCCACGAGAGATGCAGTACGAACCACTATTTTGTCTAAAAGATGGAACAACCTTTGGATTTCCATTCCCAACCTAGGCTTCGACCCACATGAAGTTTCAAGTGATAAATGTGGGGAGTTTGTTGATATTGTTCTTTCACTGCATGCCTCTTCAAACATCCAAAAGTTTCGTCCATGTAGTCGAAATTCCTATTATAATGGAGATGAATATTTGTCTCGCAATTCTAGATGGATATGCGACGCCATGAGGCATAACATAGTTGAACTTGATCTTCATATATTTGATAATCATGGTTCTAGCAGGTTGGGAGACCTTCAATTTCCTGTGAGCCTTTTCACATGCAAAACTCTTGTGGCTTTGAAGATTAGTTCAAATTGTATGAACCTTGCTCCTCCTCCTTCGGCATCAGCTTGTTTTCCAAGTCTCAAGTTCCTCCACTATAGACTTGGTTGGCCTGATAGTGCCTCAATTTTTGAAATGCTCGCTTCCAAATGTCCTGTGCTTGAAGACTTGACCATCGATGTATGTACAATTGGAAATTTCTATACTCTAAATATCCCTGCAGCAGGATTGAAAACGTTTAGAATTCTAGGTAGCTTAATGGATGCGGATACGTACAGGTTTTCTATCAATGCCCCAAAGCTTGAAAACCTTGTCGTCTCAAGTCAACTTGGATTTTTTTTTTTAAATAAAATAAGGGATGAGGCGATATTAGCTCCTCGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

272

Amino Acids

30.73

Weight (kDa)

8.1

Isoelectric Point (pI)

55.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 51 3.7e-08 F-box domain
LRR_At5g56370 PF24758 106 - 253 4.6e-11 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 285
Acc36I ACCTGC 1 cut(s) 381
AciI CCGC 1 cut(s) 698
AclI AACGTT 1 cut(s) 668
AcsI RAATTY 3 cut(s) 274, 628, 675
AcyI GRCGYC 1 cut(s) 330
AfaI GTAC 3 cut(s) 108, 619, 707
AfiI CCNNNNNNNGG 2 cut(s) 164, 656
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 5 cut(s) 26, 500, 687, 733, 806
AluI AGCT 5 cut(s) 26, 500, 687, 733, 806
Alw26I GTCTC 4 cut(s) 309, 393, 518, 754
AoxI GGCC 1 cut(s) 542
ApeKI GCWGC 1 cut(s) 653
ApoI RAATTY 3 cut(s) 274, 628, 675
ArsI GACNNNNNNTTYG 2 cut(s) 244, 276
AspA2I CCTAGG 1 cut(s) 163
AvrII CCTAGG 1 cut(s) 163
BauI CACGAG 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 603
BbvI GCAGC 1 cut(s) 665
BccI CCATC 3 cut(s) 126, 312, 614
BciVI GTATCC 1 cut(s) 694
BcoDI GTCTC 4 cut(s) 309, 393, 518, 754
BfaI CTAG 4 cut(s) 164, 315, 387, 680
BfmI CTRYAG 2 cut(s) 529, 651
BfuAI ACCTGC 1 cut(s) 381
BfuI GTATCC 1 cut(s) 694
BisI GCNGC 1 cut(s) 654
BlnI CCTAGG 1 cut(s) 163
BlsI GCNGC 1 cut(s) 655
BmsI GCATC 3 cut(s) 91, 503, 685
BpiI GAAGAC 1 cut(s) 603
BpuEI CTTGAG 2 cut(s) 500, 736
Bsa29I ATCGAT 1 cut(s) 609
BsaAI YACGTR 1 cut(s) 705
BsaHI GRCGYC 1 cut(s) 330
BsaI GGTCTC 1 cut(s) 393
BsaJI CCNNGG 2 cut(s) 163, 809
BsaWI WCCGGW 1 cut(s) 55
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 656
BseCI ATCGAT 1 cut(s) 609
BseDI CCNNGG 2 cut(s) 163, 809
BseGI GGATG 5 cut(s) 64, 75, 246, 700, 796
BseLI CCNNNNNNNGG 2 cut(s) 164, 656
BseRI GAGGAG 3 cut(s) 471, 474, 798
BseXI GCAGC 1 cut(s) 665
BshFI GGCC 1 cut(s) 544
BshVI ATCGAT 1 cut(s) 609
BsiSI CCGG 1 cut(s) 56
BslI CCNNNNNNNGG 2 cut(s) 164, 656
BsmAI GTCTC 4 cut(s) 309, 393, 518, 754
BsmBI CGTCTC 1 cut(s) 754
BsnI GGCC 1 cut(s) 544
Bso31I GGTCTC 1 cut(s) 393
Bsp1407I TGTACA 1 cut(s) 617
Bsp143I GATC 2 cut(s) 42, 358
BspACI CCGC 1 cut(s) 698
BspANI GGCC 1 cut(s) 544
BspDI ATCGAT 1 cut(s) 609
BspMAI CTGCAG 1 cut(s) 655
BspMI ACCTGC 1 cut(s) 381
BspTNI GGTCTC 1 cut(s) 393
BsrGI TGTACA 1 cut(s) 617
BssECI CCNNGG 2 cut(s) 163, 809
BssMI GATC 2 cut(s) 42, 358
BssNI GRCGYC 1 cut(s) 330
BssSI CACGAG 1 cut(s) 94
BssT1I CCWWGG 1 cut(s) 163
Bst2BI CACGAG 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 244
BstACI GRCGYC 1 cut(s) 330
BstAUI TGTACA 1 cut(s) 617
BstBAI YACGTR 1 cut(s) 705
BstC8I GCNNGC 2 cut(s) 234, 573
BstENI CCTNNNNNAGG 1 cut(s) 654
BstF5I GGATG 5 cut(s) 64, 75, 246, 700, 796
BstKTI GATC 2 cut(s) 45, 361
BstMAI GTCTC 4 cut(s) 309, 393, 518, 754
BstMBI GATC 2 cut(s) 42, 358
BstMWI GCNNNNNNNGC 2 cut(s) 23, 803
BstNSI RCATGY 2 cut(s) 236, 432
BstSFI CTRYAG 2 cut(s) 529, 651
BstSNI TACGTA 1 cut(s) 705
BstV1I GCAGC 1 cut(s) 665
BstV2I GAAGAC 1 cut(s) 603
Bsu15I ATCGAT 1 cut(s) 609
BsuI GTATCC 1 cut(s) 694
BsuRI GGCC 1 cut(s) 544
BsuTUI ATCGAT 1 cut(s) 609
BtsCI GGATG 5 cut(s) 64, 75, 246, 700, 796
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 227
BveI ACCTGC 1 cut(s) 381
Cac8I GCNNGC 2 cut(s) 234, 573
ClaI ATCGAT 1 cut(s) 609
CseI GACGC 1 cut(s) 338
Csp6I GTAC 3 cut(s) 107, 618, 706
CviAII CATG 6 cut(s) 179, 233, 264, 334, 380, 429
CviJI RGCY 9 cut(s) 26, 168, 420, 446, 500, 544, 687, 733, 806
CviKI_1 RGCY 9 cut(s) 26, 168, 420, 446, 500, 544, 687, 733, 806
CviQI GTAC 3 cut(s) 107, 618, 706
DpnI GATC 2 cut(s) 44, 360
DpnII GATC 2 cut(s) 42, 358
DraI TTTAAA 1 cut(s) 777
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
Eco105I TACGTA 1 cut(s) 705
Eco130I CCWWGG 1 cut(s) 163
Eco31I GGTCTC 1 cut(s) 393
EcoNI CCTNNNNNAGG 1 cut(s) 654
EcoRI GAATTC 1 cut(s) 675
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
Esp3I CGTCTC 1 cut(s) 754
FaeI CATG 6 cut(s) 182, 236, 267, 337, 383, 432
FatI CATG 6 cut(s) 178, 232, 263, 333, 379, 428
Fnu4HI GCNGC 1 cut(s) 654
FokI GGATG 5 cut(s) 62, 71, 233, 707, 803
Fsp4HI GCNGC 1 cut(s) 654
FspBI CTAG 4 cut(s) 164, 315, 387, 680
GluI GCNGC 1 cut(s) 654
HaeIII GGCC 1 cut(s) 544
HapII CCGG 1 cut(s) 56
HgaI GACGC 1 cut(s) 338
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 6 cut(s) 182, 236, 267, 337, 383, 432
HincII GTYRAC 1 cut(s) 758
HindII GTYRAC 1 cut(s) 758
HindIII AAGCTT 1 cut(s) 731
HpaII CCGG 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 758
Hpy188I TCNGA 1 cut(s) 813
Hpy188III TCNNGA 1 cut(s) 315
Hpy8I GTNNAC 1 cut(s) 758
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 3 cut(s) 98, 413, 498
HpyCH4IV ACGT 2 cut(s) 668, 704
HpyCH4V TGCA 4 cut(s) 104, 232, 432, 653
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 803
HpySE526I ACGT 2 cut(s) 668, 704
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 6 cut(s) 182, 236, 267, 337, 383, 432
Kzo9I GATC 2 cut(s) 42, 358
LmnI GCTCC 2 cut(s) 484, 811
LpnPI CCDG 8 cut(s) 69, 376, 426, 558, 600, 642, 663, 694
Lsp1109I GCAGC 1 cut(s) 665
LweI GCATC 3 cut(s) 91, 503, 685
MaeI CTAG 4 cut(s) 164, 315, 387, 680
MaeII ACGT 2 cut(s) 668, 704
MalI GATC 2 cut(s) 44, 360
MboI GATC 2 cut(s) 42, 358
MboII GAAGA 5 cut(s) 21, 231, 353, 463, 608
MfeI CAATTG 1 cut(s) 621
MluCI AATT 9 cut(s) 50, 274, 310, 407, 463, 558, 621, 628, 675
MnlI CCTC 8 cut(s) 247, 330, 492, 495, 533, 565, 787, 819
MseI TTAA 2 cut(s) 689, 776
MspI CCGG 1 cut(s) 56
MunI CAATTG 1 cut(s) 621
MwoI GCNNNNNNNGC 2 cut(s) 23, 803
NdeII GATC 2 cut(s) 42, 358
NlaIII CATG 6 cut(s) 182, 236, 267, 337, 383, 432
NspI RCATGY 2 cut(s) 236, 432
PaeI GCATGC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 655
Ppu21I YACGTR 1 cut(s) 705
PsiI TTATAA 1 cut(s) 285
Psp1406I AACGTT 1 cut(s) 668
PstI CTGCAG 1 cut(s) 655
RsaI GTAC 3 cut(s) 108, 619, 707
RsaNI GTAC 3 cut(s) 107, 618, 706
SaqAI TTAA 2 cut(s) 689, 776
SatI GCNGC 1 cut(s) 654
Sau3AI GATC 2 cut(s) 42, 358
SfaNI GCATC 3 cut(s) 91, 503, 685
SfcI CTRYAG 2 cut(s) 529, 651
SmlI CTYRAG 2 cut(s) 515, 751
SmoI CTYRAG 2 cut(s) 515, 751
SnaBI TACGTA 1 cut(s) 705
SphI GCATGC 1 cut(s) 236
Sse9I AATT 9 cut(s) 50, 274, 310, 407, 463, 558, 621, 628, 675
SsiI CCGC 1 cut(s) 698
SspI AATATT 1 cut(s) 299
SspMI CTAG 4 cut(s) 164, 315, 387, 680
StyI CCWWGG 1 cut(s) 163
TaiI ACGT 2 cut(s) 671, 707
TaqI TCGA 3 cut(s) 171, 271, 609
TasI AATT 9 cut(s) 50, 274, 310, 407, 463, 558, 621, 628, 675
TatI WGTACW 1 cut(s) 617
Tru1I TTAA 2 cut(s) 689, 776
Tru9I TTAA 2 cut(s) 689, 776
TscAI CASTG 1 cut(s) 234
TseI GCWGC 1 cut(s) 653
TspDTI ATGAA 4 cut(s) 195, 309, 353, 485
TspRI CASTG 1 cut(s) 234
XagI CCTNNNNNAGG 1 cut(s) 654
XapI RAATTY 3 cut(s) 274, 628, 675
XbaI TCTAGA 1 cut(s) 314
XceI RCATGY 2 cut(s) 236, 432
XcmI CCANNNNNNNNNTGG 1 cut(s) 533
XmaJI CCTAGG 1 cut(s) 163
XspI CTAG 4 cut(s) 164, 315, 387, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.