Rroxscaffold_1G00041210

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000062
Physical Location & Seq
Reverse (-)
58975417 .. 58980091
4675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00041210.1

Sequence Viewer

Length: 528 bp
ATGAAGCATTCCATAGAGATGTTGAGTTCAAAAGGGCGTTATGCAAAAGGAAAGCCTGATCATGCAATTGCACTTCCTGAAGGAATTTCCAATGTCAAGTACCTGTCTCTCAGAGATAATACTTTCGAGGGTTGTTCTCTGCCTACTTTTGGTAACCTGAACCATTTGAAGCTGTGTCTTTGTGATTGCAATTACGGGAGGTTGCTAACAGAGTCGCTCAAGAAGTTTCCTAATCTGGAATATCTTGACATTGAATATAGGTCCCTAAGTCGTGAAGAACTTTATCTACCGGAGTTTGTGCCGTTTTGTTTGTTGTCACGTCTCAAGACTATCTCTATAAGGGGATTTCAGGGACATCAAGTTGAGATGGAAGCGGCCAAGTACTTATTAAAGAATGGTAGACTTCTGAAAAAGATGACAATTGATACTTATTACCTGCACAACAAAATGGAGGAGTTGTATAAGGAATTTTTGATGCTTCAAAGGGGTTCACTGAATTGTCAAGTTGAATTTGTCGAAATGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

175

Amino Acids

20.42

Weight (kDa)

8.66

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 97 - 141 3.3e-16 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 444
AccI GTMKAC 1 cut(s) 400
AciI CCGC 1 cut(s) 374
AcoI YGGCCR 1 cut(s) 375
AcsI RAATTY 3 cut(s) 84, 467, 509
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 2 cut(s) 101, 383
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 5 cut(s) 30, 169, 254, 482, 509
AjiI CACGTC 1 cut(s) 320
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw26I GTCTC 2 cut(s) 111, 326
AoxI GGCC 1 cut(s) 375
ApoI RAATTY 3 cut(s) 84, 467, 509
AspS9I GGNCC 1 cut(s) 261
AvaII GGWCC 1 cut(s) 261
BccI CCATC 1 cut(s) 361
BceAI ACGGC 1 cut(s) 286
BclI TGATCA 1 cut(s) 58
BcoDI GTCTC 2 cut(s) 111, 326
BfuAI ACCTGC 1 cut(s) 444
BisI GCNGC 1 cut(s) 375
BlsI GCNGC 1 cut(s) 376
BmcAI AGTACT 1 cut(s) 383
Bme18I GGWCC 1 cut(s) 261
BmgBI CACGTC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 263
BmsI GCATC 1 cut(s) 465
BpuEI CTTGAG 2 cut(s) 203, 308
BsaWI WCCGGW 1 cut(s) 289
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
Bsc4I CCNNNNNNNGG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 124
BseRI GAGGAG 1 cut(s) 467
BsgI GTGCAG 1 cut(s) 422
BshFI GGCC 1 cut(s) 377
BsiSI CCGG 1 cut(s) 290
BslFI GGGAC 2 cut(s) 247, 366
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 2 cut(s) 111, 326
BsmBI CGTCTC 1 cut(s) 326
BsmFI GGGAC 2 cut(s) 247, 366
BsmI GAATGC 1 cut(s) 7
BsnI GGCC 1 cut(s) 377
Bsp143I GATC 1 cut(s) 58
BspACI CCGC 1 cut(s) 374
BspANI GGCC 1 cut(s) 377
BspCNI CTCAG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 263
BspMI ACCTGC 1 cut(s) 444
BssMI GATC 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 110, 266
BstEII GGTNACC 1 cut(s) 152
BstKTI GATC 1 cut(s) 61
BstMAI GTCTC 2 cut(s) 111, 326
BstMBI GATC 1 cut(s) 58
BstPI GGTNACC 1 cut(s) 152
BsuRI GGCC 1 cut(s) 377
BtrI CACGTC 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 491
BveI ACCTGC 1 cut(s) 444
Cfr13I GGNCC 1 cut(s) 261
Csp6I GTAC 2 cut(s) 100, 382
CviAII CATG 1 cut(s) 62
CviJI RGCY 3 cut(s) 55, 172, 377
CviKI_1 RGCY 3 cut(s) 55, 172, 377
CviQI GTAC 2 cut(s) 100, 382
DdeI CTNAG 2 cut(s) 110, 266
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
EaeI YGGCCR 1 cut(s) 375
Eco47I GGWCC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 99
Eco91I GGTNACC 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 261
EcoO65I GGTNACC 1 cut(s) 152
Esp3I CGTCTC 1 cut(s) 326
FaeI CATG 1 cut(s) 65
FaiI YATR 6 cut(s) 14, 42, 63, 258, 338, 462
FaqI GGGAC 2 cut(s) 247, 366
FatI CATG 1 cut(s) 61
FbaI TGATCA 1 cut(s) 58
FblI GTMKAC 1 cut(s) 400
Fnu4HI GCNGC 1 cut(s) 375
Fsp4HI GCNGC 1 cut(s) 375
GluI GCNGC 1 cut(s) 375
HaeIII GGCC 1 cut(s) 377
HapII CCGG 1 cut(s) 290
Hin1II CATG 1 cut(s) 65
HinfI GANTC 1 cut(s) 212
HpaII CCGG 1 cut(s) 290
Hpy166II GTNNAC 2 cut(s) 401, 491
Hpy188I TCNGA 2 cut(s) 113, 408
Hpy188III TCNNGA 6 cut(s) 77, 220, 236, 245, 272, 325
Hpy8I GTNNAC 2 cut(s) 401, 491
HpyAV CCTTC 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 5 cut(s) 44, 65, 71, 189, 439
HpyF3I CTNAG 2 cut(s) 110, 266
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 1 cut(s) 65
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 1 cut(s) 58
LpnPI CCDG 8 cut(s) 69, 90, 116, 170, 221, 303, 335, 449
LweI GCATC 1 cut(s) 465
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 2 cut(s) 152, 315
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 1 cut(s) 287
MfeI CAATTG 2 cut(s) 66, 420
MluCI AATT 7 cut(s) 66, 84, 190, 420, 467, 496, 509
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 3 cut(s) 121, 192, 445
MseI TTAA 1 cut(s) 389
MslI CAYNNNNRTG 1 cut(s) 17
MspI CCGG 1 cut(s) 290
MunI CAATTG 2 cut(s) 66, 420
Mva1269I GAATGC 1 cut(s) 7
NdeII GATC 1 cut(s) 58
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 1 cut(s) 263
NmuCI GTSAC 1 cut(s) 315
PctI GAATGC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 376
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PpuMI RGGWCCY 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 261
PspEI GGTNACC 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 263
PspPI GGNCC 1 cut(s) 261
PspPPI RGGWCCY 1 cut(s) 261
PsrI GAACNNNNNNTAC 2 cut(s) 270, 302
RsaI GTAC 2 cut(s) 101, 383
RsaNI GTAC 2 cut(s) 100, 382
RseI CAYNNNNRTG 1 cut(s) 17
SaqAI TTAA 1 cut(s) 389
SatI GCNGC 1 cut(s) 375
Sau3AI GATC 1 cut(s) 58
Sau96I GGNCC 1 cut(s) 261
ScaI AGTACT 1 cut(s) 383
SchI GAGTC 1 cut(s) 221
SetI ASST 7 cut(s) 105, 159, 174, 203, 263, 322, 438
SfaNI GCATC 1 cut(s) 465
SinI GGWCC 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 17
SmlI CTYRAG 2 cut(s) 218, 323
SmoI CTYRAG 2 cut(s) 218, 323
Sse9I AATT 7 cut(s) 66, 84, 190, 420, 467, 496, 509
SsiI CCGC 1 cut(s) 374
TaiI ACGT 1 cut(s) 322
TaqI TCGA 2 cut(s) 126, 516
TasI AATT 7 cut(s) 66, 84, 190, 420, 467, 496, 509
TatI WGTACW 1 cut(s) 381
TauI GCSGC 1 cut(s) 377
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TscAI CASTG 1 cut(s) 498
TseFI GTSAC 1 cut(s) 315
Tsp45I GTSAC 1 cut(s) 315
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 498
VpaK11BI GGWCC 1 cut(s) 261
XapI RAATTY 3 cut(s) 84, 467, 509
XmiI GTMKAC 1 cut(s) 400
ZrmI AGTACT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.