Rroxscaffold_1G00051280

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
71932157 .. 71934701
2545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00051280.1

Sequence Viewer

Length: 810 bp
ATGGATTCTCATTCAAAGCTTGGAGAAAGAGTTAGAGATAGGATAAGTGAATTGCCAGATCTTGTTCTTATTCACATAGTTTCGTTTCTTGAAACGAAATATGCTGTGAGGACCAGCATTTTGTCCACAAGATGGAAGGGTATATGGGCCTTTAGTCCCAATCTGGACTTCCGTGATAGATTTCCGAAGAACAAAGCTGGCTTTGTGGATTTTGTTGATAGGGTACTTATCTTCCGTGACTCGGATATTCAAAAGTTTCGTCTCGAATGTTCCAATGTTGGGGATTTCTCTCGTATTTATAGCTGGATTCGTACTGCAGTTAGGCATAACGTTGTTGAAGTTGATCTTAATTTTGGATCCAACAGAGACCAGGTTTATAAGTTGCCAGACAGCCTCTTTATGTGTAAATCACTGGAGGTGTTGAAGGTGGTATCGGGATGTATTACTTTTGATCCTCCATCACAGAGGTTTCCCAGTCTCAAGGTCCTCGATGCTTGTCTTTATCATCCTAACAATGACTCAATGGAGAAGCTTTTCTCTTGCTGCCCTGCACTAGAATATTTGTCTATAAGGGCAACTATTGGAGATGAGGTTTTGAATTTCAAAGTGTCTGCACCTGAACTGAAGACATTTAAGGTAGATTTGTTCAATGCGTATAAAGATGATAATGAATATCACAGCGAAGATGAAGATGAAGCTCCTGAATGCATTGATGTCTACAACTTCTTCATTAATGCCCCAAAGCTTGAAACCATTGATATCCATACCGATATCTTGTCAAATTTTTCTTTGAAAATGCAGCATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

269

Amino Acids

31.19

Weight (kDa)

5.52

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 50 9.3e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 83 - 209 2.4e-08 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 101 - 209 4.1e-14 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 378
AccB7I CCANNNNNTGG 1 cut(s) 132
AccI GTMKAC 1 cut(s) 717
AclI AACGTT 1 cut(s) 330
AclWI GGATC 3 cut(s) 351, 364, 446
AcsI RAATTY 2 cut(s) 598, 781
AcuI CTGAAG 1 cut(s) 644
AfaI GTAC 2 cut(s) 225, 313
AfiI CCNNNNNNNGG 3 cut(s) 132, 241, 279
AjnI CCWGG 1 cut(s) 369
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 6 cut(s) 19, 197, 303, 532, 698, 745
AluI AGCT 6 cut(s) 19, 197, 303, 532, 698, 745
Alw26I GTCTC 3 cut(s) 266, 360, 482
AlwI GGATC 3 cut(s) 351, 364, 446
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 2 cut(s) 543, 799
ApoI RAATTY 2 cut(s) 598, 781
ArsI GACNNNNNNTTYG 4 cut(s) 103, 135, 244, 276
AseI ATTAAT 1 cut(s) 732
Asp700I GAANNNNTTC 1 cut(s) 533
AspS9I GGNCC 3 cut(s) 111, 147, 484
AvaII GGWCC 2 cut(s) 111, 484
BamHI GGATCC 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 632
BbvI GCAGC 1 cut(s) 530
BccI CCATC 2 cut(s) 126, 466
BciT130I CCWGG 1 cut(s) 371
BcoDI GTCTC 3 cut(s) 266, 360, 482
BfaI CTAG 1 cut(s) 554
BfmI CTRYAG 1 cut(s) 315
BglII AGATCT 1 cut(s) 58
BisI GCNGC 2 cut(s) 544, 800
BlsI GCNGC 2 cut(s) 545, 801
Bme1390I CCNGG 1 cut(s) 371
Bme18I GGWCC 2 cut(s) 111, 484
BmgT120I GGNCC 3 cut(s) 111, 147, 484
BmiI GGNNCC 1 cut(s) 358
BmrFI CCNGG 1 cut(s) 371
BmrI ACTGGG 1 cut(s) 468
BmsI GCATC 1 cut(s) 481
BmuI ACTGGG 1 cut(s) 468
BpiI GAAGAC 1 cut(s) 632
BpmI CTGGAG 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 464
BsaI GGTCTC 1 cut(s) 360
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 576, 606
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 241, 279
Bse1I ACTGG 2 cut(s) 417, 474
BseBI CCWGG 1 cut(s) 371
BseGI GGATG 2 cut(s) 443, 505
BseLI CCNNNNNNNGG 3 cut(s) 132, 241, 279
BseNI ACTGG 2 cut(s) 417, 474
BseXI GCAGC 1 cut(s) 530
BsgI GTGCAG 2 cut(s) 534, 597
BshFI GGCC 1 cut(s) 149
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 3 cut(s) 132, 241, 279
BsmAI GTCTC 3 cut(s) 266, 360, 482
BsmBI CGTCTC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 141
BsmI GAATGC 1 cut(s) 710
BsnI GGCC 1 cut(s) 149
Bso31I GGTCTC 1 cut(s) 360
Bsp143I GATC 4 cut(s) 58, 343, 356, 451
BspANI GGCC 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 358
BspMAI CTGCAG 1 cut(s) 319
BspPI GGATC 3 cut(s) 351, 364, 446
BspTNI GGTCTC 1 cut(s) 360
BsrI ACTGG 2 cut(s) 417, 474
BssMI GATC 4 cut(s) 58, 343, 356, 451
Bst2UI CCWGG 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 199
BstF5I GGATG 2 cut(s) 443, 505
BstKTI GATC 4 cut(s) 61, 346, 359, 454
BstMAI GTCTC 3 cut(s) 266, 360, 482
BstMBI GATC 4 cut(s) 58, 343, 356, 451
BstNI CCWGG 1 cut(s) 371
BstSCI CCNGG 1 cut(s) 369
BstSFI CTRYAG 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 530
BstV2I GAAGAC 1 cut(s) 632
BstX2I RGATCY 2 cut(s) 58, 356
BstYI RGATCY 2 cut(s) 58, 356
BsuRI GGCC 1 cut(s) 149
BtsCI GGATG 2 cut(s) 443, 505
BtsIMutI CAGTG 1 cut(s) 410
Cac8I GCNNGC 1 cut(s) 199
Cfr13I GGNCC 3 cut(s) 111, 147, 484
CsiI ACCWGGT 1 cut(s) 369
Csp6I GTAC 2 cut(s) 224, 312
CviJI RGCY 9 cut(s) 19, 149, 197, 201, 303, 393, 532, 698, 745
CviKI_1 RGCY 9 cut(s) 19, 149, 197, 201, 303, 393, 532, 698, 745
CviQI GTAC 2 cut(s) 224, 312
DpnI GATC 4 cut(s) 60, 345, 358, 453
DpnII GATC 4 cut(s) 58, 343, 356, 451
Eco31I GGTCTC 1 cut(s) 360
Eco32I GATATC 2 cut(s) 760, 772
Eco47I GGWCC 2 cut(s) 111, 484
Eco57I CTGAAG 1 cut(s) 644
EcoO109I RGGNCCY 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 369
EcoRV GATATC 2 cut(s) 760, 772
EcoT22I ATGCAT 1 cut(s) 710
Esp3I CGTCTC 1 cut(s) 266
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FaqI GGGAC 1 cut(s) 141
FblI GTMKAC 1 cut(s) 717
Fnu4HI GCNGC 2 cut(s) 544, 800
FokI GGATG 2 cut(s) 450, 492
Fsp4HI GCNGC 2 cut(s) 544, 800
FspBI CTAG 1 cut(s) 554
GluI GCNGC 2 cut(s) 544, 800
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 1 cut(s) 149
HindIII AAGCTT 3 cut(s) 17, 530, 743
HinfI GANTC 4 cut(s) 5, 239, 307, 518
Hpy166II GTNNAC 2 cut(s) 126, 718
Hpy188I TCNGA 2 cut(s) 186, 244
Hpy188III TCNNGA 5 cut(s) 89, 164, 263, 435, 701
Hpy8I GTNNAC 2 cut(s) 126, 718
HpyAV CCTTC 2 cut(s) 130, 418
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 5 cut(s) 317, 551, 614, 708, 799
HpySE526I ACGT 1 cut(s) 330
Kzo9I GATC 4 cut(s) 58, 343, 356, 451
LmnI GCTCC 1 cut(s) 703
Lsp1109I GCAGC 1 cut(s) 530
LweI GCATC 1 cut(s) 481
MabI ACCWGGT 1 cut(s) 369
MaeI CTAG 1 cut(s) 554
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 236
MalI GATC 4 cut(s) 60, 345, 358, 453
MboI GATC 4 cut(s) 58, 343, 356, 451
MboII GAAGA 6 cut(s) 199, 223, 637, 695, 701, 718
MflI RGATCY 2 cut(s) 58, 356
MluCI AATT 4 cut(s) 50, 349, 598, 781
MlyI GAGTC 2 cut(s) 233, 512
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 7 cut(s) 102, 404, 409, 459, 465, 497, 583
Mph1103I ATGCAT 1 cut(s) 710
MroXI GAANNNNTTC 1 cut(s) 533
MseI TTAA 3 cut(s) 348, 633, 732
MspR9I CCNGG 1 cut(s) 371
Mva1269I GAATGC 1 cut(s) 710
MvaI CCWGG 1 cut(s) 371
NdeII GATC 4 cut(s) 58, 343, 356, 451
NlaIV GGNNCC 1 cut(s) 358
NmuCI GTSAC 1 cut(s) 236
NsiI ATGCAT 1 cut(s) 710
PctI GAATGC 1 cut(s) 710
PdmI GAANNNNTTC 1 cut(s) 533
PfeI GAWTC 2 cut(s) 5, 307
PflMI CCANNNNNTGG 1 cut(s) 132
PkrI GCNGC 2 cut(s) 545, 801
PleI GAGTC 2 cut(s) 233, 512
PpsI GAGTC 2 cut(s) 233, 512
PpuMI RGGWCCY 1 cut(s) 484
PshBI ATTAAT 1 cut(s) 732
PsiI TTATAA 1 cut(s) 378
Psp1406I AACGTT 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 484
Psp6I CCWGG 1 cut(s) 369
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 358
PspPI GGNCC 3 cut(s) 111, 147, 484
PspPPI RGGWCCY 1 cut(s) 484
PstI CTGCAG 1 cut(s) 319
PsuI RGATCY 2 cut(s) 58, 356
RsaI GTAC 2 cut(s) 225, 313
RsaNI GTAC 2 cut(s) 224, 312
SaqAI TTAA 3 cut(s) 348, 633, 732
SatI GCNGC 2 cut(s) 544, 800
Sau3AI GATC 4 cut(s) 58, 343, 356, 451
Sau96I GGNCC 3 cut(s) 111, 147, 484
SchI GAGTC 2 cut(s) 233, 512
ScrFI CCNGG 1 cut(s) 371
SexAI ACCWGGT 1 cut(s) 369
SfaNI GCATC 1 cut(s) 481
SfcI CTRYAG 1 cut(s) 315
SinI GGWCC 2 cut(s) 111, 484
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 4 cut(s) 50, 349, 598, 781
SspI AATATT 1 cut(s) 560
SspMI CTAG 1 cut(s) 554
StyD4I CCNGG 1 cut(s) 369
TaiI ACGT 1 cut(s) 333
TaqI TCGA 2 cut(s) 264, 489
TasI AATT 4 cut(s) 50, 349, 598, 781
TfiI GAWTC 2 cut(s) 5, 307
Tru1I TTAA 3 cut(s) 348, 633, 732
Tru9I TTAA 3 cut(s) 348, 633, 732
TscAI CASTG 1 cut(s) 417
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 2 cut(s) 543, 799
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 4 cut(s) 684, 702, 708, 718
TspGWI ACGGA 2 cut(s) 161, 224
TspRI CASTG 1 cut(s) 417
Van91I CCANNNNNTGG 1 cut(s) 132
VpaK11BI GGWCC 2 cut(s) 111, 484
VspI ATTAAT 1 cut(s) 732
XapI RAATTY 2 cut(s) 598, 781
XmiI GTMKAC 1 cut(s) 717
XmnI GAANNNNTTC 1 cut(s) 533
XspI CTAG 1 cut(s) 554
Zsp2I ATGCAT 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.