FvH4_3g17080

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000062
Physical Location & Seq
Forward (+)
10803017 .. 10814587
11571 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g17080.t2

Sequence Viewer

Length: 3801 bp
ATGGTGTCACAGGTCGAAGCAAGAAGGCTTAAAAAAGATAGGATCAGTGCATTACTTAAAAAAGATAGGATCAGTGCATTACCAAATGCAGTTCTTAATCACATCCTTTCGTTCCTTAAAACCGAACATGTTGTGATGACCATCTTTTTGTCTAAAAGATGGAAGAACATTTGGGCCTCTGTTCCTACTCTAGACTTCTGCGACCAAGAGTACCCTGAAAGTATTCCTCATTCGAGGTTTATAGATAATGTACTATTCTTCCGTGACTCAACAAACATTCATAAGTTTCGTCTCCATTGCATTCATGTTAAGGATTTTGATCGTGTTTGTAGTTGGATTGGCGCTGCCATTAGGCGCAATGTTGCTGAACTTTATCTTTCTGTTAAGTATGACGGAAGTGATGAGATCTTTGAGTTGCCTAGAGTGTTTTCACATTCTCTCTATGTTCATATTGATCATCCTCTCGATAACTCAATGGAGGAGCTTTTCTCTTGCTGCCCTGTGCTGGAAGATCTGAGCATAAATGGAACTCCTGGCCAGTATGGAGATGAGGGCGTTTTGAACTTCACTGTATCTGCACCTGAACTGAAGACACTGAAAGTACATTGGTATAGGCATGGTGTTGTTGAGAAGTGCAACTTTCATGTTGTTGCCCCAAAGCTTGAAAATTTTCATATCTTGCAGTATCCTTCAACTGAATGTTATTTGGAAAATGCAAAATCTCTAGTCAGAGTTACAATTGCTCTACAATACCATTTTGCAGATGAAGATCGTCTCTTTGCTCTCCGTGGAACTACGCTGTTTGCAGGAATTTCCAATGGTTGTTATCTTCCTGTCTTCGATAACTTGAGACGATTGGAGCTTGCCATTTACAATTGCTATTACTGGGAACTGCTAAAAGAGCTTCTCAGGAGATCACCTAAACTGGAACATCTTGACTTCAAGTGCCCTGGAGCATCTTCGAATCATGAATGGAGTCCACCAGATTCGGTACCTATTTGTTTATTGACGCACCTCAAAACCATCTCTATAAGGGGATTCAGAGGAAAACAGGATGAGATGGATGCAGCTAAGTATTTGTTAATGAATGGCGAAGTTTTGAAGAACATGACTTTTTATAGTGAGGATCTTTCTTTTTTTGGTCTGCATAATGAGGATGCTTCACTTACAAAGGAGGAGGAGATATACCAGGAATTGTCACTTTGCAAATGGGGTTCAAAGACTTGTCAAGTTGAGTTTTACGGAGACCAAAAAGATGACGTCTGGTCGTTGTTTGTCACCAAAAATGTGCTGTGTGGATCAATTTCGAAGTTGACCCTTTTTTGGCTAGAAATTGTCATCTGCCTTAGCCAGTGTTCTTTCTCACCGCCCAGTCAGAACTTTCATTACTCATCACTTATTCTTCCCGGGCTAAATTATCAGGATTTGATGGCAGAGGTTCAAGCAAAAAGAGTTAACAGAGATAGGATAAGTGCATTACCAGATGCAATCCTTTATCACATCCTTTCGTTCCTTAAAACCGAAGATATTGTGATGACCATTTTTCTGTCTAGAAGATGGAAGAACATTTGGGCCTCTGTTCCGAGTCTAGACTTTTGCGATGAAGAGAATCCTGATACTATTTCTTTTTCGAGGTTTATTGATAATGTACTCTTCTTCCGTGACTCAACAGACATTCAGAAGTTTCGTCTCCACTCCACTAGTGTTGAGGATTTTGATCGTGTTTGTGGTTGGATTGGTGCTGCCATTAGGCGCAATGTTGCTGAACTTAATCCTTCTGTTGAGTATTATGGAGATGATAACGAACCTCAGATCTTTGAGTTGCCTCAGAGTGTTTTCACATCTAAAACTTTGAGGGTCCTGCACTTGTGGTCAAGTTTTACTATTGATGCTCCTGCATCAGGGTGTTTTTCGAATCTCAAGTCTCTCTTTGTTTTTATTGATCGTCCTGTCACTAACTCAATGGAGAAGCTTTTTTCTAGCTGCCCTGTGCTGGAAGATTTGTGCATACATGGAAATGATGGGATGTATGGAGATGAGGCCGTTTTGAATTTCACTGTATCTGCACCTGAACTGAAGACACTGAAAGTAGATTTGTATACACATAAACATTATGAGAAGTGCAACTTTCGTATTGCTGCCCCAAAGCTTGAAAATTTTCATCTCTCTCAGGATCCTTCAACTGATTGTTATTTAGAGAATGTGAAATCTCTAGTCAGAGTTACTATTGATCTACAAGACCATTTTGCAGGTGAAGATTGTCTATTTTTTATCCATGGAACTGCGCTTTTGGCAGTAATTTCCAATGTTATATACTTGTCTCTTTCAGCACATTGTTTGAAAGGTTGTTGTGTTCCCTTCTTTGATAAATTGAGCCGGTTGGAGCTTGTTCTTTACAATTGCTATTACTGGGAACTGCTAAAAGAGCTCCTCAGGAGATCACCTAAACTGGAATTTCTTGTCATAGAGCTGAAAGATTTCATGTGCCCTGGAGCATCTTCAGATCATGAGTGGAGTCCACCAGAGTCGGTACCTAAATGTTTATTGACAAAGATCAAGACAGTCTCTATAAGGGGATTCAAGGGAAAACTAGATGAGATGGATATGGCTAAGTATTTGTTAAAGAACGTTTTCACTGATGAGCTAGTCAAATCCCTCCTATTCACTTATTCAGGCTTGAGGGTTGCAGAAGTGGCAGGAATGGATTTGATGTCAGAGGTTGAAGCAAAAAGAGTTAACAAAGACAGGATAAGTGCATTACCAGATGCAATCCTTTATCACATTCTTTCGTTCCTTACAACTGAAGATGTTGTGACGACTATCTTTTTGTCTAGAAGATGGAAGAAGATTTGGGCCTCTGTTCCGAGTCTAGACTTCTGCGACCATGAGAACCCTGAAACTATTCCTTTTTCAAGGTTTATTGACAATGTACTCTTCTTCCGTGACTCAACAGACATTCATAAGTTTCGTCTCCACTCCATTAGTGTTGGGGATTTTGATCGTGTTTGTGGTTGGATTGGAGCTGCCATTAGGCGCAATGTTGCTGAACTTGATCTTTCTGTTGAGTATTCTGGACTTGATGACCAACCTCAGATCTTTGAGTTGCCTCAGAGTGTTTTCACATCTAAAACTTTGAGGGTTTTGCACTTGTGGTCAAATTTTATTATTAATGCTCCCGCATCAGGGTGTTTTCCGAATCTCAAGTCTCTCTATGTTCATATTGATCGTCCTATCAATAAGTCAATGGAGAAGTTTTTATCTTGCTGCCCTGTGCTGGAAGATTTGACCATATACGGAAGTCATGGGCATTATGGAGATGAGGTCGTTTTGAATATCACTGTATCTGCACCTGAACTGAAGACACTGGAAATACATTGGACGACTTATAATGATTATGAGAGGTGCAACTTTCATGTTGTTGCCCCAAAGCTTGAAACTTTTCATCTCAGACAGTACCCTTCAACTGATTGTTATTTGGAGAATGCAAAATCTCTAGTCAGAGTTACTATTTCTCTACAAGACCATTTTGAACGTGAAGATCGTCTTTTTGTTATCCGTGGAACTGCGCTTTTGGCAGTCATTTCAAATGTTAGATACTTGTCTCTTTCAGCACATTGTTTGAAAGGTTGTTGTCTTCCTGTCTTTGATAAGTTGAGCCGATTGGAGCTTGCTCTTTACAGTTGCTATTACTGGGAACTGCTAAAAGAGCTTTTCAGGAGATCACCTAAACTGGAATATCTTGTTTTAGAGCTGAAAGTAAGATGTAACTTCATATATATAAAAAATACCTATTACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

1267

Amino Acids

146.08

Weight (kDa)

6.0

Isoelectric Point (pI)

44.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 24 - 62 3.2e-06 F-box domain
FBD PF08387 328 - 372 9.3e-15 FBD
F-box PF00646 490 - 529 1e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 560 - 891 2.2e-10 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 577 - 724 6.6e-12 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 841 - 885 3.1e-13 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3387
AarI CACCTGC 1 cut(s) 2240
AatII GACGTC 1 cut(s) 1263
Acc36I ACCTGC 1 cut(s) 2240
Acc65I GGTACC 2 cut(s) 991, 2530
AccB1I GGYRCC 2 cut(s) 991, 2530
AccI GTMKAC 1 cut(s) 2099
AciI CCGC 2 cut(s) 1367, 3177
AclI AACGTT 1 cut(s) 2628
AclWI GGATC 6 cut(s) 50, 77, 1134, 1306, 2168, 2181
AcoI YGGCCR 1 cut(s) 535
AcsI RAATTY 6 cut(s) 667, 810, 2050, 2155, 2453, 3157
AcuI CTGAAG 5 cut(s) 608, 2096, 2484, 2823, 3377
AcyI GRCGYC 1 cut(s) 1260
AfaI GTAC 8 cut(s) 212, 252, 603, 993, 1650, 2532, 2931, 3455
AfiI CCNNNNNNNGG 7 cut(s) 505, 1323, 1901, 1993, 3182, 3183, 3274
AflIII ACRYGT 2 cut(s) 127, 3795
AhdI GACNNNNNGTC 1 cut(s) 1264
AhlI ACTAGT 1 cut(s) 1700
AjnI CCWGG 4 cut(s) 532, 949, 1188, 2488
Alw21I GWGCWC 1 cut(s) 2430
AlwI GGATC 6 cut(s) 50, 77, 1134, 1306, 2168, 2181
Ama87I CYCGRG 1 cut(s) 1406
AoxI GGCC 5 cut(s) 174, 535, 1572, 2040, 2853
ApeKI GCWGC 8 cut(s) 344, 495, 1067, 1742, 1983, 2138, 3023, 3264
ApoI RAATTY 6 cut(s) 667, 810, 2050, 2155, 2453, 3157
ArsI GACNNNNNNTTYG 8 cut(s) 130, 162, 1907, 1939, 2809, 2841, 3188, 3220
AseI ATTAAT 1 cut(s) 3168
Asp700I GAANNNNTTC 7 cut(s) 222, 669, 2157, 2477, 2630, 2901, 3438
Asp718I GGTACC 2 cut(s) 991, 2530
AspLEI GCGC 6 cut(s) 344, 357, 1755, 2287, 3036, 3568
AspS9I GGNCC 4 cut(s) 174, 1572, 1858, 2853
AsuC2I CCSGG 2 cut(s) 1407, 1408
AsuHPI GGTGA 6 cut(s) 909, 1270, 1356, 2264, 2433, 3714
AsuII TTCGAA 3 cut(s) 962, 1307, 1913
AvaI CYCGRG 1 cut(s) 1406
AvaII GGWCC 1 cut(s) 1858
AxyI CCTNAGG 1 cut(s) 2432
BaeGI GKGCMC 2 cut(s) 950, 2489
BalI TGGCCA 1 cut(s) 537
BamHI GGATCC 1 cut(s) 2173
BanI GGYRCC 2 cut(s) 991, 2530
BanII GRGCYC 1 cut(s) 2430
BbsI GAAGAC 5 cut(s) 596, 829, 2084, 3365, 3626
Bbv12I GWGCWC 1 cut(s) 2430
BbvI GCAGC 8 cut(s) 331, 482, 1079, 1729, 1970, 2125, 3010, 3251
BccI CCATC 9 cut(s) 149, 153, 1031, 1054, 1423, 1551, 2015, 2593, 2832
BceAI ACGGC 1 cut(s) 2027
BciT130I CCWGG 4 cut(s) 534, 951, 1190, 2490
BciVI GTATCC 1 cut(s) 696
BclI TGATCA 1 cut(s) 454
BcnI CCSGG 2 cut(s) 1407, 1408
BcuI ACTAGT 1 cut(s) 1700
BfoI RGCGCY 1 cut(s) 345
BfuAI ACCTGC 1 cut(s) 2240
BfuI GTATCC 1 cut(s) 696
BglII AGATCT 4 cut(s) 405, 511, 1812, 3093
BisI GCNGC 8 cut(s) 345, 496, 1068, 1743, 1984, 2139, 3024, 3265
BlsI GCNGC 8 cut(s) 346, 497, 1069, 1744, 1985, 2140, 3025, 3266
Bme1390I CCNGG 6 cut(s) 534, 951, 1190, 1407, 1408, 2490
Bme18I GGWCC 1 cut(s) 1858
BmeRI GACNNNNNGTC 1 cut(s) 1264
BmeT110I CYCGRG 1 cut(s) 1406
BmgT120I GGNCC 4 cut(s) 174, 1572, 1858, 2853
BmiI GGNNCC 4 cut(s) 993, 1859, 2175, 2532
BmrFI CCNGG 6 cut(s) 534, 951, 1190, 1407, 1408, 2490
BmrI ACTGGG 4 cut(s) 895, 1365, 2419, 3700
BmsI GCATC 9 cut(s) 965, 1054, 1147, 1474, 1879, 1907, 2504, 2755, 3188
BmuI ACTGGG 4 cut(s) 895, 1365, 2419, 3700
BpiI GAAGAC 5 cut(s) 596, 829, 2084, 3365, 3626
BplI GAGNNNNNCTC 2 cut(s) 473, 505
BpmI CTGGAG 2 cut(s) 972, 2511
Bpu10I CCTNAGC 1 cut(s) 1346
Bpu14I TTCGAA 3 cut(s) 962, 1307, 1913
BpuEI CTTGAG 4 cut(s) 868, 1904, 2698, 3185
BpuMI CCSGG 2 cut(s) 1407, 1408
BsaBI GATNNNNATC 5 cut(s) 140, 318, 768, 1716, 2997
BsaHI GRCGYC 1 cut(s) 1260
BsaI GGTCTC 1 cut(s) 1239
BsaJI CCNNGG 6 cut(s) 787, 949, 1406, 2275, 2488, 3556
BsaXI ACNNNNNCTCC 2 cut(s) 3306, 3336
Bsc4I CCNNNNNNNGG 7 cut(s) 505, 1323, 1901, 1993, 3182, 3183, 3274
Bse118I RCCGGY 1 cut(s) 2376
Bse21I CCTNAGG 1 cut(s) 2432
Bse3DI GCAATG 4 cut(s) 295, 364, 1762, 3043
Bse8I GATNNNNATC 5 cut(s) 140, 318, 768, 1716, 2997
BseBI CCWGG 4 cut(s) 534, 951, 1190, 2490
BseDI CCNNGG 6 cut(s) 787, 949, 1406, 2275, 2488, 3556
BseGI GGATG 7 cut(s) 102, 457, 1060, 1069, 1162, 1500, 2031
BseJI GATNNNNATC 5 cut(s) 140, 318, 768, 1716, 2997
BseLI CCNNNNNNNGG 7 cut(s) 505, 1323, 1901, 1993, 3182, 3183, 3274
BseMI GCAATG 4 cut(s) 295, 364, 1762, 3043
BseMII CTCAG 9 cut(s) 506, 922, 1823, 1841, 2183, 2446, 3104, 3122, 3460
BseRI GAGGAG 4 cut(s) 494, 1190, 1193, 2420
BseSI GKGCMC 2 cut(s) 950, 2489
BseXI GCAGC 8 cut(s) 331, 482, 1079, 1729, 1970, 2125, 3010, 3251
BsgI GTGCAG 4 cut(s) 561, 1847, 2049, 3330
BshFI GGCC 5 cut(s) 176, 537, 1574, 2042, 2855
BshNI GGYRCC 2 cut(s) 991, 2530
BsiHKAI GWGCWC 1 cut(s) 2430
BsiHKCI CYCGRG 1 cut(s) 1406
BsiSI CCGG 2 cut(s) 1407, 2377
BslI CCNNNNNNNGG 7 cut(s) 505, 1323, 1901, 1993, 3182, 3183, 3274
BsmBI CGTCTC 5 cut(s) 296, 779, 844, 1694, 2975
BsmI GAATGC 2 cut(s) 300, 3487
BsnI GGCC 5 cut(s) 176, 537, 1574, 2042, 2855
Bso31I GGTCTC 1 cut(s) 1239
BsoBI CYCGRG 1 cut(s) 1406
Bsp119I TTCGAA 3 cut(s) 962, 1307, 1913
Bsp1286I GDGCHC 3 cut(s) 950, 2430, 2489
Bsp19I CCATGG 1 cut(s) 2275
BspACI CCGC 2 cut(s) 1367, 3177
BspANI GGCC 5 cut(s) 176, 537, 1574, 2042, 2855
BspCNI CTCAG 9 cut(s) 507, 921, 1822, 1840, 2182, 2445, 3103, 3121, 3459
BspHI TCATGA 2 cut(s) 967, 2506
BspLI GGNNCC 4 cut(s) 993, 1859, 2175, 2532
BspMI ACCTGC 1 cut(s) 2240
BspPI GGATC 6 cut(s) 50, 77, 1134, 1306, 2168, 2181
BspT104I TTCGAA 3 cut(s) 962, 1307, 1913
BspT107I GGYRCC 2 cut(s) 991, 2530
BspTNI GGTCTC 1 cut(s) 1239
BsrDI GCAATG 4 cut(s) 295, 364, 1762, 3043
BsrFI RCCGGY 1 cut(s) 2376
BssAI RCCGGY 1 cut(s) 2376
BssECI CCNNGG 6 cut(s) 787, 949, 1406, 2275, 2488, 3556
BssNAI GTATAC 1 cut(s) 2100
BssNI GRCGYC 1 cut(s) 1260
BssT1I CCWWGG 1 cut(s) 2275
Bst1107I GTATAC 1 cut(s) 2100
Bst2UI CCWGG 4 cut(s) 534, 951, 1190, 2490
Bst4CI ACNGT 6 cut(s) 571, 2059, 2563, 3340, 3453, 3680
Bst6I CTCTTC 3 cut(s) 1599, 1658, 2939
BstACI GRCGYC 1 cut(s) 1260
BstBI TTCGAA 3 cut(s) 962, 1307, 1913
BstC8I GCNNGC 2 cut(s) 864, 3669
BstDSI CCRYGG 3 cut(s) 787, 2275, 3556
BstENI CCTNNNNNAGG 1 cut(s) 1899
BstF5I GGATG 7 cut(s) 102, 457, 1060, 1069, 1162, 1500, 2031
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 6 cut(s) 344, 357, 1755, 2287, 3036, 3568
BstMWI GCNNNNNNNGC 6 cut(s) 901, 2291, 2425, 2693, 3572, 3706
BstNI CCWGG 4 cut(s) 534, 951, 1190, 2490
BstNSI RCATGY 2 cut(s) 131, 3799
BstSCI CCNGG 6 cut(s) 532, 949, 1188, 1405, 1406, 2488
BstSLI GKGCMC 2 cut(s) 950, 2489
BstV1I GCAGC 8 cut(s) 331, 482, 1079, 1729, 1970, 2125, 3010, 3251
BstV2I GAAGAC 5 cut(s) 596, 829, 2084, 3365, 3626
BstX2I RGATCY 6 cut(s) 405, 511, 1126, 1812, 2173, 3093
BstYI RGATCY 6 cut(s) 405, 511, 1126, 1812, 2173, 3093
BstZ17I GTATAC 1 cut(s) 2100
Bsu36I CCTNAGG 1 cut(s) 2432
BsuI GTATCC 1 cut(s) 696
BsuRI GGCC 5 cut(s) 176, 537, 1574, 2042, 2855
BtgI CCRYGG 3 cut(s) 787, 2275, 3556
BtgZI GCGATG 1 cut(s) 1614
BtsCI GGATG 7 cut(s) 102, 457, 1060, 1069, 1162, 1500, 2031
BveI ACCTGC 1 cut(s) 2240
Cac8I GCNNGC 2 cut(s) 864, 3669
CciI TCATGA 2 cut(s) 967, 2506
CfoI GCGC 6 cut(s) 344, 357, 1755, 2287, 3036, 3568
Cfr10I RCCGGY 1 cut(s) 2376
Cfr13I GGNCC 4 cut(s) 174, 1572, 1858, 2853
Cfr9I CCCGGG 1 cut(s) 1406
CseI GACGC 1 cut(s) 1018
Csp6I GTAC 8 cut(s) 211, 251, 602, 992, 1649, 2531, 2930, 3454
CspCI CAANNNNNGTGG 2 cut(s) 1687, 1722
CviQI GTAC 8 cut(s) 211, 251, 602, 992, 1649, 2531, 2930, 3454
DriI GACNNNNNGTC 1 cut(s) 1264
EaeI YGGCCR 1 cut(s) 535
Eam1104I CTCTTC 3 cut(s) 1599, 1658, 2939
Eam1105I GACNNNNNGTC 1 cut(s) 1264
EarI CTCTTC 3 cut(s) 1599, 1658, 2939
Ecl136II GAGCTC 1 cut(s) 2428
Eco130I CCWWGG 1 cut(s) 2275
Eco24I GRGCYC 1 cut(s) 2430
Eco31I GGTCTC 1 cut(s) 1239
Eco47I GGWCC 1 cut(s) 1858
Eco53kI GAGCTC 1 cut(s) 2428
Eco57I CTGAAG 5 cut(s) 608, 2096, 2484, 2823, 3377
Eco81I CCTNAGG 1 cut(s) 2432
Eco88I CYCGRG 1 cut(s) 1406
EcoICRI GAGCTC 1 cut(s) 2428
EcoNI CCTNNNNNAGG 1 cut(s) 1899
EcoO109I RGGNCCY 1 cut(s) 1858
EcoRII CCWGG 4 cut(s) 532, 949, 1188, 2488
EcoT14I CCWWGG 1 cut(s) 2275
EcoT38I GRGCYC 1 cut(s) 2430
ErhI CCWWGG 1 cut(s) 2275
Esp3I CGTCTC 5 cut(s) 296, 779, 844, 1694, 2975
FalI AAGNNNNNCTT 8 cut(s) 623, 655, 1913, 1945, 2111, 2143, 3528, 3560
FauI CCCGC 1 cut(s) 3184
FbaI TGATCA 1 cut(s) 454
FblI GTMKAC 1 cut(s) 2099
Fnu4HI GCNGC 8 cut(s) 345, 496, 1068, 1743, 1984, 2139, 3024, 3265
FokI GGATG 7 cut(s) 89, 444, 1067, 1076, 1169, 1487, 2038
FriOI GRGCYC 1 cut(s) 2430
Fsp4HI GCNGC 8 cut(s) 345, 496, 1068, 1743, 1984, 2139, 3024, 3265
GlaI GCGC 6 cut(s) 343, 356, 1754, 2286, 3035, 3567
GluI GCNGC 8 cut(s) 345, 496, 1068, 1743, 1984, 2139, 3024, 3265
GsuI CTGGAG 2 cut(s) 972, 2511
HaeII RGCGCY 1 cut(s) 345
HaeIII GGCC 5 cut(s) 176, 537, 1574, 2042, 2855
HapII CCGG 2 cut(s) 1407, 2377
HgaI GACGC 1 cut(s) 1018
HhaI GCGC 6 cut(s) 344, 357, 1755, 2287, 3036, 3568
Hin1I GRCGYC 1 cut(s) 1260
Hin6I GCGC 6 cut(s) 342, 355, 1753, 2285, 3034, 3566
HinP1I GCGC 6 cut(s) 342, 355, 1753, 2285, 3034, 3566
HincII GTYRAC 3 cut(s) 1314, 1456, 2737
HindII GTYRAC 3 cut(s) 1314, 1456, 2737
HindIII AAGCTT 4 cut(s) 659, 1970, 2147, 3428
HpaI GTTAAC 2 cut(s) 1456, 2737
HpaII CCGG 2 cut(s) 1407, 2377
HphI GGTGA 6 cut(s) 909, 1270, 1356, 2264, 2433, 3714
Hpy166II GTNNAC 6 cut(s) 980, 1314, 1456, 2100, 2519, 2737
Hpy8I GTNNAC 6 cut(s) 980, 1314, 1456, 2100, 2519, 2737
HpyAV CCTTC 6 cut(s) 18, 699, 1785, 2187, 2368, 3468
HpyCH4III ACNGT 6 cut(s) 571, 2059, 2563, 3340, 3453, 3680
HpyCH4IV ACGT 3 cut(s) 1260, 2628, 3532
HpyF10VI GCNNNNNNNGC 6 cut(s) 901, 2291, 2425, 2693, 3572, 3706
HpySE526I ACGT 3 cut(s) 1260, 2628, 3532
Hsp92I GRCGYC 1 cut(s) 1260
HspAI GCGC 6 cut(s) 342, 355, 1753, 2285, 3034, 3566
KpnI GGTACC 2 cut(s) 995, 2534
Ksp22I TGATCA 1 cut(s) 454
KspAI GTTAAC 2 cut(s) 1456, 2737
Lsp1109I GCAGC 8 cut(s) 331, 482, 1079, 1729, 1970, 2125, 3010, 3251
LweI GCATC 9 cut(s) 965, 1054, 1147, 1474, 1879, 1907, 2504, 2755, 3188
MaeII ACGT 3 cut(s) 1260, 2628, 3532
MfeI CAATTG 3 cut(s) 738, 874, 2398
MflI RGATCY 6 cut(s) 405, 511, 1126, 1812, 2173, 3093
MhlI GDGCHC 3 cut(s) 950, 2430, 2489
MlsI TGGCCA 1 cut(s) 537
MluNI TGGCCA 1 cut(s) 537
MlyI GAGTC 8 cut(s) 260, 985, 1594, 1658, 2524, 2534, 2875, 2939
MmeI TCCRAC 4 cut(s) 314, 1712, 2361, 2993
Mox20I TGGCCA 1 cut(s) 537
MroXI GAANNNNTTC 7 cut(s) 222, 669, 2157, 2477, 2630, 2901, 3438
MscI TGGCCA 1 cut(s) 537
MslI CAYNNNNRTG 3 cut(s) 1903, 2016, 3184
Msp20I TGGCCA 1 cut(s) 537
MspI CCGG 2 cut(s) 1407, 2377
MspR9I CCNGG 6 cut(s) 534, 951, 1190, 1407, 1408, 2490
MunI CAATTG 3 cut(s) 738, 874, 2398
Mva1269I GAATGC 2 cut(s) 300, 3487
MvaI CCWGG 4 cut(s) 534, 951, 1190, 2490
MwoI GCNNNNNNNGC 6 cut(s) 901, 2291, 2425, 2693, 3572, 3706
NciI CCSGG 2 cut(s) 1407, 1408
NcoI CCATGG 1 cut(s) 2275
NlaIV GGNNCC 4 cut(s) 993, 1859, 2175, 2532
NmuCI GTSAC 8 cut(s) 6, 263, 1197, 1276, 1661, 1951, 2812, 2942
NspI RCATGY 2 cut(s) 131, 3799
NspV TTCGAA 3 cut(s) 962, 1307, 1913
PagI TCATGA 2 cut(s) 967, 2506
PaqCI CACCTGC 1 cut(s) 2240
PciI ACATGT 2 cut(s) 127, 3795
PcsI WCGNNNNNNNCGW 1 cut(s) 3538
PctI GAATGC 2 cut(s) 300, 3487
PdmI GAANNNNTTC 7 cut(s) 222, 669, 2157, 2477, 2630, 2901, 3438
PfeI GAWTC 7 cut(s) 964, 986, 1038, 1609, 1915, 2577, 3196
PkrI GCNGC 8 cut(s) 346, 497, 1069, 1744, 1985, 2140, 3025, 3266
PleI GAGTC 8 cut(s) 260, 984, 1593, 1658, 2523, 2533, 2874, 2939
PpsI GAGTC 8 cut(s) 260, 984, 1593, 1658, 2523, 2533, 2874, 2939
PpuMI RGGWCCY 1 cut(s) 1858
PscI ACATGT 2 cut(s) 127, 3795
PshBI ATTAAT 1 cut(s) 3168
PsiI TTATAA 1 cut(s) 3387
Psp124BI GAGCTC 1 cut(s) 2430
Psp1406I AACGTT 1 cut(s) 2628
Psp5II RGGWCCY 1 cut(s) 1858
Psp6I CCWGG 4 cut(s) 532, 949, 1188, 2488
PspGI CCWGG 4 cut(s) 532, 949, 1188, 2488
PspN4I GGNNCC 4 cut(s) 993, 1859, 2175, 2532
PspPI GGNCC 4 cut(s) 174, 1572, 1858, 2853
PspPPI RGGWCCY 1 cut(s) 1858
PsrI GAACNNNNNNTAC 2 cut(s) 1370, 1402
PsuI RGATCY 6 cut(s) 405, 511, 1126, 1812, 2173, 3093
RsaI GTAC 8 cut(s) 212, 252, 603, 993, 1650, 2532, 2931, 3455
RsaNI GTAC 8 cut(s) 211, 251, 602, 992, 1649, 2531, 2930, 3454
RseI CAYNNNNRTG 3 cut(s) 1903, 2016, 3184
SacI GAGCTC 1 cut(s) 2430
SatI GCNGC 8 cut(s) 345, 496, 1068, 1743, 1984, 2139, 3024, 3265
Sau96I GGNCC 4 cut(s) 174, 1572, 1858, 2853
SchI GAGTC 8 cut(s) 260, 985, 1594, 1658, 2524, 2534, 2875, 2939
ScrFI CCNGG 6 cut(s) 534, 951, 1190, 1407, 1408, 2490
SduI GDGCHC 3 cut(s) 950, 2430, 2489
SfaNI GCATC 9 cut(s) 965, 1054, 1147, 1474, 1879, 1907, 2504, 2755, 3188
SfuI TTCGAA 3 cut(s) 962, 1307, 1913
SinI GGWCC 1 cut(s) 1858
SmaI CCCGGG 1 cut(s) 1408
SmiMI CAYNNNNRTG 3 cut(s) 1903, 2016, 3184
SmlI CTYRAG 4 cut(s) 847, 1919, 2677, 3200
SmoI CTYRAG 4 cut(s) 847, 1919, 2677, 3200
SpeI ACTAGT 1 cut(s) 1700
SsiI CCGC 2 cut(s) 1367, 3177
SstI GAGCTC 1 cut(s) 2430
StyD4I CCNGG 6 cut(s) 532, 949, 1188, 1405, 1406, 2488
StyI CCWWGG 1 cut(s) 2275
TaaI ACNGT 6 cut(s) 571, 2059, 2563, 3340, 3453, 3680
TaiI ACGT 3 cut(s) 1263, 2631, 3535
TaqI TCGA 8 cut(s) 15, 233, 465, 840, 962, 1307, 1631, 1913
TatI WGTACW 4 cut(s) 250, 601, 1648, 2929
TfiI GAWTC 7 cut(s) 964, 986, 1038, 1609, 1915, 2577, 3196
TseFI GTSAC 8 cut(s) 6, 263, 1197, 1276, 1661, 1951, 2812, 2942
TseI GCWGC 8 cut(s) 344, 495, 1067, 1742, 1983, 2138, 3023, 3264
Tsp45I GTSAC 8 cut(s) 6, 263, 1197, 1276, 1661, 1951, 2812, 2942
TspGWI ACGGA 8 cut(s) 251, 408, 776, 1257, 1649, 2930, 3309, 3545
TspMI CCCGGG 1 cut(s) 1406
VpaK11BI GGWCC 1 cut(s) 1858
VspI ATTAAT 1 cut(s) 3168
XagI CCTNNNNNAGG 1 cut(s) 1899
XapI RAATTY 6 cut(s) 667, 810, 2050, 2155, 2453, 3157
XbaI TCTAGA 5 cut(s) 190, 1550, 1588, 2831, 2869
XceI RCATGY 2 cut(s) 131, 3799
XmaI CCCGGG 1 cut(s) 1406
XmiI GTMKAC 1 cut(s) 2099
XmnI GAANNNNTTC 7 cut(s) 222, 669, 2157, 2477, 2630, 2901, 3438
ZraI GACGTC 1 cut(s) 1261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.