Rh4AG210900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
50368984 .. 50372510
3527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG210900.1

Sequence Viewer

Length: 432 bp
ATGGAGTTGCTCAAGCGATCACCTAAGCTTGAAGATCTGGTCTTAGATATCGATATCCGCTCATGGTATGATGAAAAATATGTCGAAGGATACGAGCCCTTCAAACCATCAGAGATTGTGCCTATTTGTGTGGTGTCACGCCTTAAGACTGTTTCCATTACTCACATCACAGGACATGATGATCAGTTGAATGTGGTAAAGTATTTGTTAAAGTATGGTCAAGTTCTGAGGAATATGACTATATTCACCTGTGGTACTCTTCTCTTCCAGACTCGTCATATCACAGAAGAGAAGTTCCAGAGGAAAATTTTGAAGTATCACAAGAGTTCGAAGACTTGTGAGGTTGAAGTTAATTCGTCTAAACAATTTGAAGGAACTGGTGGTATTGGTGGAAGTGGTGGAACTCCCGGAACTGGTGGTATTGCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

143

Amino Acids

16.05

Weight (kDa)

8.39

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 39 - 81 2.1e-09 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 60
AciI CCGC 1 cut(s) 58
AcsI RAATTY 1 cut(s) 306
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 413
AflII CTTAAG 1 cut(s) 143
AgsI TTSAA 6 cut(s) 32, 103, 190, 313, 347, 371
AluBI AGCT 2 cut(s) 28, 428
AluI AGCT 2 cut(s) 28, 428
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 1 cut(s) 306
AsuC2I CCSGG 1 cut(s) 408
AsuHPI GGTGA 2 cut(s) 12, 238
AsuII TTCGAA 1 cut(s) 329
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 338
BccI CCATC 1 cut(s) 115
BciVI GTATCC 1 cut(s) 83
BclI TGATCA 1 cut(s) 181
BcnI CCSGG 1 cut(s) 408
BfrI CTTAAG 1 cut(s) 143
BfuI GTATCC 1 cut(s) 83
BglII AGATCT 1 cut(s) 34
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
Bme1390I CCNGG 1 cut(s) 408
BmrFI CCNGG 1 cut(s) 408
BpiI GAAGAC 1 cut(s) 338
Bpu10I CCTNAGC 1 cut(s) 24
Bpu14I TTCGAA 1 cut(s) 329
BpuMI CCSGG 1 cut(s) 408
Bsa29I ATCGAT 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 413
Bse1I ACTGG 2 cut(s) 382, 418
BseCI ATCGAT 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMII CTCAG 1 cut(s) 218
BseNI ACTGG 2 cut(s) 382, 418
BshVI ATCGAT 1 cut(s) 51
BsiSI CCGG 1 cut(s) 408
BslI CCNNNNNNNGG 1 cut(s) 413
Bsp119I TTCGAA 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 3 cut(s) 17, 34, 181
BspACI CCGC 1 cut(s) 58
BspCNI CTCAG 1 cut(s) 219
BspDI ATCGAT 1 cut(s) 51
BspT104I TTCGAA 1 cut(s) 329
BspTI CTTAAG 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 60
BsrI ACTGG 2 cut(s) 382, 418
BssMI GATC 3 cut(s) 17, 34, 181
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 3 cut(s) 264, 269, 282
BstAFI CTTAAG 1 cut(s) 143
BstBI TTCGAA 1 cut(s) 329
BstDEI CTNAG 3 cut(s) 24, 43, 227
BstKTI GATC 3 cut(s) 20, 37, 184
BstMBI GATC 3 cut(s) 17, 34, 181
BstSCI CCNGG 1 cut(s) 406
BstV2I GAAGAC 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
Bsu15I ATCGAT 1 cut(s) 51
BsuI GTATCC 1 cut(s) 83
BsuTUI ATCGAT 1 cut(s) 51
ClaI ATCGAT 1 cut(s) 51
Csp6I GTAC 1 cut(s) 255
CviAII CATG 2 cut(s) 63, 176
CviJI RGCY 3 cut(s) 28, 97, 428
CviKI_1 RGCY 3 cut(s) 28, 97, 428
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 3 cut(s) 24, 43, 227
DpnI GATC 3 cut(s) 19, 36, 183
DpnII GATC 3 cut(s) 17, 34, 181
Eam1104I CTCTTC 3 cut(s) 264, 269, 282
EarI CTCTTC 3 cut(s) 264, 269, 282
Eco24I GRGCYC 1 cut(s) 99
Eco32I GATATC 2 cut(s) 49, 55
EcoRV GATATC 2 cut(s) 49, 55
EcoT38I GRGCYC 1 cut(s) 99
FaeI CATG 2 cut(s) 66, 179
FaiI YATR 8 cut(s) 64, 69, 81, 177, 216, 236, 242, 279
FatI CATG 2 cut(s) 62, 175
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 426
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 426
GluI GCNGC 1 cut(s) 426
HapII CCGG 1 cut(s) 408
Hin1II CATG 2 cut(s) 66, 179
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 1 cut(s) 271
HpaII CCGG 1 cut(s) 408
HphI GGTGA 2 cut(s) 12, 238
Hpy188I TCNGA 2 cut(s) 112, 228
Hpy188III TCNNGA 2 cut(s) 268, 298
HpyAV CCTTC 3 cut(s) 80, 109, 365
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 425
HpyF3I CTNAG 3 cut(s) 24, 43, 227
Hsp92II CATG 2 cut(s) 66, 179
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 3 cut(s) 17, 34, 181
LpnPI CCDG 8 cut(s) 23, 156, 262, 281, 311, 363, 399, 421
MaeIII GTNAC 1 cut(s) 135
MalI GATC 3 cut(s) 19, 36, 183
MbiI CCGCTC 1 cut(s) 60
MboI GATC 3 cut(s) 17, 34, 181
MboII GAAGA 5 cut(s) 44, 251, 256, 299, 343
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 3 cut(s) 306, 352, 365
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 3 cut(s) 222, 294, 334
MseI TTAA 3 cut(s) 144, 209, 351
MspCI CTTAAG 1 cut(s) 143
MspI CCGG 1 cut(s) 408
MspR9I CCNGG 1 cut(s) 408
NciI CCSGG 1 cut(s) 408
NdeII GATC 3 cut(s) 17, 34, 181
NlaIII CATG 2 cut(s) 66, 179
NmuCI GTSAC 1 cut(s) 135
NspV TTCGAA 1 cut(s) 329
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PfoI TCCNGGA 1 cut(s) 406
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SaqAI TTAA 3 cut(s) 144, 209, 351
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 3 cut(s) 17, 34, 181
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 1 cut(s) 99
SetI ASST 5 cut(s) 25, 30, 251, 345, 430
SfuI TTCGAA 1 cut(s) 329
SmlI CTYRAG 2 cut(s) 11, 143
SmoI CTYRAG 2 cut(s) 11, 143
Sse9I AATT 3 cut(s) 306, 352, 365
SsiI CCGC 1 cut(s) 58
StyD4I CCNGG 1 cut(s) 406
TaaI ACNGT 1 cut(s) 151
TaqI TCGA 3 cut(s) 51, 84, 329
TasI AATT 3 cut(s) 306, 352, 365
Tru1I TTAA 3 cut(s) 144, 209, 351
Tru9I TTAA 3 cut(s) 144, 209, 351
TseFI GTSAC 1 cut(s) 135
TseI GCWGC 1 cut(s) 425
Tsp45I GTSAC 1 cut(s) 135
TspDTI ATGAA 1 cut(s) 87
Vha464I CTTAAG 1 cut(s) 143
XapI RAATTY 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.