pycom15g34310

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011844
Physical Location & Seq
Reverse (-)
33953705 .. 33954658
954 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g34310.1

Sequence Viewer

Length: 954 bp
ATGGGTATCAAGGGATTTGTCGATGGAGGCGTCGCTTCCATTGTCGCCGGCTGCTCCACCCACCCTCTGGATCTTATCAAGGTCCGTATGCAGCTCCAGGGCGAGAGCAACCCCGCTCGCGCCGCCGCCCCCCAGCCCATCCACAATCTCCGCCCCGCTTTTGCTTTTAATTCCCACTCCGCCACCCTTGTTGCCCCGCCGCCCCCACCGGCCGCCGTACGTGCCGGTCCAATCTCGGTCGGAGTCAAAATTTTTCAGACCGAAGGCGTTAAGGCGTTGTTCTCGGGAGTCTCAGCAACAGTTCTCCGCCAGACTCTGTACTCCACCACCCGAATGGGCCTCTACGAAATTTTGAAAGTCAAATGGGCCGACCCGAACTCCGGGAACCTGCCACTGGCCCGCAAAATTTTTGCCGGGCTTGTCGCCGGTGGAGTCGGAGCCGCCGTCGGCAACCCCGCCGATGTGGCCATGGTCAGGATGCAGGCCGGCGGCCGCGACTACAAGAACGTGATCGACGCGATTGCCAAGATGGCGAGGAGCGAAGGGGTTCTTAGTCTGTGGCGCGGGTCCAGCCTTACGGTGAACCGCGCTATGATCGTGACGGCGTCGCAGCTGGCGTCGTACGACCAGATCAAGGAGGCGATTCTAGATAGGCACTTGATGAAGGACGGCCTTGGGACGCACGTGACGGCGAGTTTCGCGGCGGGGTTTGTGGCGTCCGTGGCCTCGAATCCGATCGACGTGATTAAGACGAGGGTTATGAACATGAAGGTGGAGGCTGGGCGGGACCCGCCCTACACTGGGGCCCTCGACTGTGCCTTAAAGACCGTGAGGGCGGAGGGGCCCATGGCCCTTTACAAGGGCTTCATCCCTACGATTTCGAGGCAGGGGCCGTTCACTGTGGTGCTGTTTGTGACCCTTGAGCAGATCAGGAAGGTGCTTAAGGACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

318

Amino Acids

33.55

Weight (kDa)

9.93

Isoelectric Point (pI)

24.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 6 - 121 2.3e-16 Mitochondrial carrier protein
Mito_carr PF00153 130 - 217 1.3e-19 Mitochondrial carrier protein
Mito_carr PF00153 225 - 316 1.2e-20 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011844)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24570
fragaria_vesca FvH4_5g35620
malus_domestica MD08G1195400.v1.1 MD15G1383200.v1.1
prunus_persica Prupe.1G529200_v2.0.a1 Prupe.8G067800_v2.0.a1
pyrus_communis pycom15g34310
rosa_chinensis RchiOBHm_Chr7g0237101
rosa_laevigata RLG00000001033
rosa_multiflora Rmu_sc0000272.1_g000004 Rmu_sc0002131.1_g000039 Rmu_sc0033615.1_g000001
rosa_roxburghii Rroxscaffold_3G00224510
rosa_rugosa Rorug07G0301800
rosa_samantha Rh7AG458000 Rh7BG428700 Rh7CG476100 Rh7DG445300
rosa_wichuraiana Rw7G037960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 396
AccB7I CCANNNNNTGG 1 cut(s) 67
AccBSI CCGCTC 1 cut(s) 116
AccII CGCG 6 cut(s) 120, 495, 518, 564, 588, 701
AclWI GGATC 1 cut(s) 78
AcoI YGGCCR 3 cut(s) 210, 465, 490
AcsI RAATTY 3 cut(s) 249, 348, 405
AcvI CACGTG 1 cut(s) 685
AcyI GRCGYC 4 cut(s) 30, 605, 617, 716
AfaI GTAC 3 cut(s) 219, 320, 623
AfiI CCNNNNNNNGG 8 cut(s) 67, 380, 394, 474, 634, 800, 801, 859
AflII CTTAAG 1 cut(s) 941
AgsI TTSAA 1 cut(s) 355
AjiI CACGTC 1 cut(s) 742
AjnI CCWGG 1 cut(s) 96
AleI CACNNNNGTG 1 cut(s) 902
AluBI AGCT 2 cut(s) 94, 613
AluI AGCT 2 cut(s) 94, 613
Alw26I GTCTC 1 cut(s) 295
AlwI GGATC 1 cut(s) 78
AlwNI CAGNNNCTG 1 cut(s) 316
Ama87I CYCGRG 1 cut(s) 283
ApaI GGGCCC 2 cut(s) 808, 846
ApeKI GCWGC 3 cut(s) 51, 91, 610
ApoI RAATTY 3 cut(s) 249, 348, 405
Asp700I GAANNNNTTC 1 cut(s) 546
AspLEI GCGC 3 cut(s) 122, 564, 590
AsuC2I CCSGG 2 cut(s) 382, 415
AsuHPI GGTGA 1 cut(s) 592
AvaI CYCGRG 1 cut(s) 283
AvaII GGWCC 4 cut(s) 82, 227, 567, 787
BaeGI GKGCMC 2 cut(s) 808, 846
BalI TGGCCA 1 cut(s) 467
BanII GRGCYC 2 cut(s) 808, 846
BbrPI CACGTG 1 cut(s) 685
BbvI GCAGC 3 cut(s) 38, 103, 622
BccI CCATC 3 cut(s) 17, 146, 523
BceAI ACGGC 6 cut(s) 200, 428, 618, 685, 705, 877
BcgI CGANNNNNNTGC 2 cut(s) 503, 537
BciT130I CCWGG 1 cut(s) 98
BcnI CCSGG 2 cut(s) 382, 415
BcoDI GTCTC 1 cut(s) 295
BfaI CTAG 1 cut(s) 647
BfrI CTTAAG 1 cut(s) 941
BfuAI ACCTGC 1 cut(s) 396
BglI GCCNNNNNGGC 2 cut(s) 464, 530
Bme1390I CCNGG 3 cut(s) 98, 382, 415
Bme18I GGWCC 4 cut(s) 82, 227, 567, 787
BmeT110I CYCGRG 1 cut(s) 283
BmgBI CACGTC 1 cut(s) 742
BmrFI CCNGG 3 cut(s) 98, 382, 415
BmrI ACTGGG 1 cut(s) 810
BmsI GCATC 1 cut(s) 468
BmuI ACTGGG 1 cut(s) 810
BpmI CTGGAG 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 941
BpuMI CCSGG 2 cut(s) 382, 415
BsaAI YACGTR 2 cut(s) 221, 685
BsaHI GRCGYC 4 cut(s) 30, 605, 617, 716
BsaJI CCNNGG 5 cut(s) 97, 468, 673, 720, 846
BsaXI ACNNNNNCTCC 4 cut(s) 362, 392, 429, 459
Bsc4I CCNNNNNNNGG 8 cut(s) 67, 380, 394, 474, 634, 800, 801, 859
Bse118I RCCGGY 5 cut(s) 47, 208, 224, 425, 485
Bse1I ACTGG 2 cut(s) 399, 805
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 5 cut(s) 97, 468, 673, 720, 846
BseGI GGATG 3 cut(s) 138, 483, 867
BseLI CCNNNNNNNGG 8 cut(s) 67, 380, 394, 474, 634, 800, 801, 859
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 2 cut(s) 399, 805
BseRI GAGGAG 1 cut(s) 550
BseSI GKGCMC 2 cut(s) 808, 846
BseX3I CGGCCG 2 cut(s) 210, 490
BseXI GCAGC 3 cut(s) 38, 103, 622
BseYI CCCAGC 2 cut(s) 132, 779
Bsh1236I CGCG 6 cut(s) 120, 495, 518, 564, 588, 701
Bsh1285I CGRYCG 4 cut(s) 213, 240, 493, 738
BsiEI CGRYCG 4 cut(s) 213, 240, 493, 738
BsiHKCI CYCGRG 1 cut(s) 283
BsiSI CCGG 7 cut(s) 48, 209, 225, 381, 414, 426, 486
BsiWI CGTACG 2 cut(s) 217, 621
BslFI GGGAC 2 cut(s) 691, 800
BslI CCNNNNNNNGG 8 cut(s) 67, 380, 394, 474, 634, 800, 801, 859
BsmAI GTCTC 1 cut(s) 295
BsmFI GGGAC 2 cut(s) 691, 800
BsoBI CYCGRG 1 cut(s) 283
Bsp120I GGGCCC 2 cut(s) 804, 842
Bsp1286I GDGCHC 2 cut(s) 808, 846
Bsp143I GATC 6 cut(s) 70, 510, 594, 630, 735, 927
Bsp19I CCATGG 2 cut(s) 468, 846
BspCNI CTCAG 1 cut(s) 305
BspFNI CGCG 6 cut(s) 120, 495, 518, 564, 588, 701
BspMI ACCTGC 1 cut(s) 396
BspPI GGATC 1 cut(s) 78
BspTI CTTAAG 1 cut(s) 941
BsrBI CCGCTC 1 cut(s) 116
BsrFI RCCGGY 5 cut(s) 47, 208, 224, 425, 485
BsrI ACTGG 2 cut(s) 399, 805
BssAI RCCGGY 5 cut(s) 47, 208, 224, 425, 485
BssECI CCNNGG 5 cut(s) 97, 468, 673, 720, 846
BssMI GATC 6 cut(s) 70, 510, 594, 630, 735, 927
BssNI GRCGYC 4 cut(s) 30, 605, 617, 716
BssT1I CCWWGG 3 cut(s) 468, 673, 846
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 5 cut(s) 301, 580, 815, 829, 901
BstACI GRCGYC 4 cut(s) 30, 605, 617, 716
BstAFI CTTAAG 1 cut(s) 941
BstBAI YACGTR 2 cut(s) 221, 685
BstC8I GCNNGC 6 cut(s) 49, 118, 400, 483, 487, 615
BstDEI CTNAG 2 cut(s) 292, 551
BstDSI CCRYGG 3 cut(s) 468, 720, 846
BstENI CCTNNNNNAGG 1 cut(s) 857
BstF5I GGATG 3 cut(s) 138, 483, 867
BstFNI CGCG 6 cut(s) 120, 495, 518, 564, 588, 701
BstHHI GCGC 3 cut(s) 122, 564, 590
BstKTI GATC 6 cut(s) 73, 513, 597, 633, 738, 930
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 6 cut(s) 70, 510, 594, 630, 735, 927
BstMCI CGRYCG 4 cut(s) 213, 240, 493, 738
BstMWI GCNNNNNNNGC 8 cut(s) 122, 221, 464, 530, 570, 698, 722, 790
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 3 cut(s) 96, 380, 413
BstSLI GKGCMC 2 cut(s) 808, 846
BstUI CGCG 6 cut(s) 120, 495, 518, 564, 588, 701
BstV1I GCAGC 3 cut(s) 38, 103, 622
BstX2I RGATCY 1 cut(s) 70
BstXI CCANNNNNNTGG 1 cut(s) 334
BstYI RGATCY 1 cut(s) 70
BstZI CGGCCG 2 cut(s) 210, 490
BtgI CCRYGG 3 cut(s) 468, 720, 846
BtrI CACGTC 1 cut(s) 742
BtsCI GGATG 3 cut(s) 138, 483, 867
BtsIMutI CAGTG 3 cut(s) 392, 798, 897
BveI ACCTGC 1 cut(s) 396
Cac8I GCNNGC 6 cut(s) 49, 118, 400, 483, 487, 615
CaiI CAGNNNCTG 1 cut(s) 316
CciNI GCGGCCGC 1 cut(s) 490
CfoI GCGC 3 cut(s) 122, 564, 590
Cfr10I RCCGGY 5 cut(s) 47, 208, 224, 425, 485
CseI GACGC 6 cut(s) 19, 524, 594, 606, 688, 705
Csp6I GTAC 3 cut(s) 218, 319, 622
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 3 cut(s) 469, 766, 847
CviQI GTAC 3 cut(s) 218, 319, 622
DdeI CTNAG 2 cut(s) 292, 551
DpnI GATC 6 cut(s) 72, 512, 596, 632, 737, 929
DpnII GATC 6 cut(s) 70, 510, 594, 630, 735, 927
EaeI YGGCCR 3 cut(s) 210, 465, 490
EagI CGGCCG 2 cut(s) 210, 490
EciI GGCGGA 4 cut(s) 140, 169, 296, 851
EclXI CGGCCG 2 cut(s) 210, 490
Eco130I CCWWGG 3 cut(s) 468, 673, 846
Eco24I GRGCYC 2 cut(s) 808, 846
Eco47I GGWCC 4 cut(s) 82, 227, 567, 787
Eco52I CGGCCG 2 cut(s) 210, 490
Eco72I CACGTG 1 cut(s) 685
Eco88I CYCGRG 1 cut(s) 283
EcoNI CCTNNNNNAGG 1 cut(s) 857
EcoO109I RGGNCCY 4 cut(s) 787, 804, 805, 842
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 3 cut(s) 468, 673, 846
EcoT38I GRGCYC 2 cut(s) 808, 846
ErhI CCWWGG 3 cut(s) 468, 673, 846
FaeI CATG 3 cut(s) 472, 769, 850
FaiI YATR 6 cut(s) 89, 470, 593, 761, 767, 848
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FaqI GGGAC 2 cut(s) 691, 800
FatI CATG 3 cut(s) 468, 765, 846
FauI CCCGC 9 cut(s) 121, 163, 204, 407, 463, 557, 697, 777, 798
FokI GGATG 3 cut(s) 125, 490, 854
FriOI GRGCYC 2 cut(s) 808, 846
FspBI CTAG 1 cut(s) 647
GlaI GCGC 3 cut(s) 121, 563, 589
GsaI CCCAGC 2 cut(s) 136, 783
GsuI CTGGAG 1 cut(s) 80
HapII CCGG 7 cut(s) 48, 209, 225, 381, 414, 426, 486
HgaI GACGC 6 cut(s) 19, 524, 594, 606, 688, 705
HhaI GCGC 3 cut(s) 122, 564, 590
Hin1I GRCGYC 4 cut(s) 30, 605, 617, 716
Hin1II CATG 3 cut(s) 472, 769, 850
Hin6I GCGC 3 cut(s) 120, 562, 588
HinP1I GCGC 3 cut(s) 120, 562, 588
HinfI GANTC 6 cut(s) 243, 288, 313, 432, 643, 730
HpaII CCGG 7 cut(s) 48, 209, 225, 381, 414, 426, 486
HphI GGTGA 1 cut(s) 592
Hpy166II GTNNAC 2 cut(s) 583, 897
Hpy188I TCNGA 4 cut(s) 242, 258, 437, 735
Hpy188III TCNNGA 6 cut(s) 68, 285, 475, 598, 647, 931
Hpy8I GTNNAC 2 cut(s) 583, 897
Hpy99I CGWCG 6 cut(s) 35, 449, 518, 610, 622, 743
HpyAV CCTTC 5 cut(s) 257, 536, 658, 763, 928
HpyCH4III ACNGT 5 cut(s) 301, 580, 815, 829, 901
HpyCH4IV ACGT 4 cut(s) 220, 507, 684, 741
HpyCH4V TGCA 2 cut(s) 91, 481
HpyF10VI GCNNNNNNNGC 8 cut(s) 122, 221, 464, 530, 570, 698, 722, 790
HpyF3I CTNAG 2 cut(s) 292, 551
HpySE526I ACGT 4 cut(s) 220, 507, 684, 741
Hsp92I GRCGYC 4 cut(s) 30, 605, 617, 716
Hsp92II CATG 3 cut(s) 472, 769, 850
HspAI GCGC 3 cut(s) 120, 562, 588
KflI GGGWCCC 1 cut(s) 787
KroI GCCGGC 2 cut(s) 47, 485
KroNI GCCGGC 2 cut(s) 49, 487
Kzo9I GATC 6 cut(s) 70, 510, 594, 630, 735, 927
LmnI GCTCC 4 cut(s) 59, 99, 437, 537
Lsp1109I GCAGC 3 cut(s) 38, 103, 622
LweI GCATC 1 cut(s) 468
MaeI CTAG 1 cut(s) 647
MaeII ACGT 4 cut(s) 220, 507, 684, 741
MaeIII GTNAC 3 cut(s) 598, 685, 913
MalI GATC 6 cut(s) 72, 512, 596, 632, 737, 929
MbiI CCGCTC 1 cut(s) 116
MboI GATC 6 cut(s) 70, 510, 594, 630, 735, 927
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 2 cut(s) 808, 846
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 4 cut(s) 169, 249, 348, 405
MluNI TGGCCA 1 cut(s) 467
MlyI GAGTC 4 cut(s) 252, 297, 307, 441
MmeI TCCRAC 2 cut(s) 220, 415
Mox20I TGGCCA 1 cut(s) 467
MroNI GCCGGC 2 cut(s) 47, 485
MroXI GAANNNNTTC 1 cut(s) 546
MscI TGGCCA 1 cut(s) 467
MseI TTAA 5 cut(s) 168, 270, 747, 821, 942
MslI CAYNNNNRTG 3 cut(s) 332, 770, 902
Msp20I TGGCCA 1 cut(s) 467
MspA1I CMGCKG 1 cut(s) 613
MspCI CTTAAG 1 cut(s) 941
MspI CCGG 7 cut(s) 48, 209, 225, 381, 414, 426, 486
MspR9I CCNGG 3 cut(s) 98, 382, 415
MvaI CCWGG 1 cut(s) 98
MvnI CGCG 6 cut(s) 120, 495, 518, 564, 588, 701
MwoI GCNNNNNNNGC 8 cut(s) 122, 221, 464, 530, 570, 698, 722, 790
NaeI GCCGGC 2 cut(s) 49, 487
NciI CCSGG 2 cut(s) 382, 415
NcoI CCATGG 2 cut(s) 468, 846
NdeII GATC 6 cut(s) 70, 510, 594, 630, 735, 927
NgoMIV GCCGGC 2 cut(s) 47, 485
NlaIII CATG 3 cut(s) 472, 769, 850
NmuCI GTSAC 3 cut(s) 598, 685, 913
NotI GCGGCCGC 1 cut(s) 490
OliI CACNNNNGTG 1 cut(s) 902
PcsI WCGNNNNNNNCGW 3 cut(s) 27, 441, 614
PdiI GCCGGC 2 cut(s) 49, 487
PdmI GAANNNNTTC 1 cut(s) 546
PfeI GAWTC 2 cut(s) 643, 730
Pfl23II CGTACG 2 cut(s) 217, 621
PflFI GACNNNGTC 1 cut(s) 604
PflMI CCANNNNNTGG 1 cut(s) 67
PfoI TCCNGGA 1 cut(s) 380
Ple19I CGATCG 1 cut(s) 738
PleI GAGTC 4 cut(s) 251, 296, 307, 440
PmaCI CACGTG 1 cut(s) 685
PmlI CACGTG 1 cut(s) 685
PpsI GAGTC 4 cut(s) 251, 296, 307, 440
Ppu21I YACGTR 2 cut(s) 221, 685
PpuMI RGGWCCY 1 cut(s) 787
Psp5II RGGWCCY 1 cut(s) 787
Psp6I CCWGG 1 cut(s) 96
PspCI CACGTG 1 cut(s) 685
PspFI CCCAGC 2 cut(s) 132, 779
PspGI CCWGG 1 cut(s) 96
PspLI CGTACG 2 cut(s) 217, 621
PspOMI GGGCCC 2 cut(s) 804, 842
PspPPI RGGWCCY 1 cut(s) 787
PstNI CAGNNNCTG 1 cut(s) 316
PsuI RGATCY 1 cut(s) 70
PsyI GACNNNGTC 1 cut(s) 604
PvuI CGATCG 1 cut(s) 738
PvuII CAGCTG 1 cut(s) 613
RsaI GTAC 3 cut(s) 219, 320, 623
RsaNI GTAC 3 cut(s) 218, 319, 622
RseI CAYNNNNRTG 3 cut(s) 332, 770, 902
SaqAI TTAA 5 cut(s) 168, 270, 747, 821, 942
Sau3AI GATC 6 cut(s) 70, 510, 594, 630, 735, 927
SchI GAGTC 4 cut(s) 252, 297, 307, 441
ScrFI CCNGG 3 cut(s) 98, 382, 415
SduI GDGCHC 2 cut(s) 808, 846
SfaNI GCATC 1 cut(s) 468
SgrAI CRCCGGYG 1 cut(s) 425
SinI GGWCC 4 cut(s) 82, 227, 567, 787
SmiMI CAYNNNNRTG 3 cut(s) 332, 770, 902
SmlI CTYRAG 2 cut(s) 920, 941
SmoI CTYRAG 2 cut(s) 920, 941
Sse9I AATT 4 cut(s) 169, 249, 348, 405
SspMI CTAG 1 cut(s) 647
StyD4I CCNGG 3 cut(s) 96, 380, 413
StyI CCWWGG 3 cut(s) 468, 673, 846
TaaI ACNGT 5 cut(s) 301, 580, 815, 829, 901
TaiI ACGT 4 cut(s) 223, 510, 687, 744
TaqI TCGA 6 cut(s) 21, 513, 728, 738, 810, 881
TaqII GACCGA 2 cut(s) 226, 275
TasI AATT 4 cut(s) 169, 249, 348, 405
TatI WGTACW 1 cut(s) 318
TauI GCSGC 8 cut(s) 125, 128, 202, 215, 443, 492, 495, 704
TfiI GAWTC 2 cut(s) 643, 730
Tru1I TTAA 5 cut(s) 168, 270, 747, 821, 942
Tru9I TTAA 5 cut(s) 168, 270, 747, 821, 942
TscAI CASTG 3 cut(s) 399, 805, 904
TseFI GTSAC 3 cut(s) 598, 685, 913
TseI GCWGC 3 cut(s) 51, 91, 610
Tsp45I GTSAC 3 cut(s) 598, 685, 913
TspDTI ATGAA 4 cut(s) 677, 776, 782, 856
TspGWI ACGGA 2 cut(s) 74, 709
TspRI CASTG 3 cut(s) 399, 805, 904
Tth111I GACNNNGTC 1 cut(s) 604
Van91I CCANNNNNTGG 1 cut(s) 67
Vha464I CTTAAG 1 cut(s) 941
VpaK11BI GGWCC 4 cut(s) 82, 227, 567, 787
XagI CCTNNNNNAGG 1 cut(s) 857
XapI RAATTY 3 cut(s) 249, 348, 405
XbaI TCTAGA 1 cut(s) 646
XcmI CCANNNNNNNNNTGG 2 cut(s) 64, 331
XmnI GAANNNNTTC 1 cut(s) 546
XspI CTAG 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.