Rmu_sc0033615.1_g000001

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033615.1
OG0011844
Physical Location & Seq
Reverse (-)
2 .. 387
386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033615.1_g000001.1.cds

Sequence Viewer

Length: 386 bp
atgggtgtcaaaggtttcgttgagggaggcgtagcttccatcgtcgccggctgctccacccaccctttggatctcatcaaggtccgaatgcagctccagggcgaaaagggcctacccgccccggcccagcagcccatccacgctcttcgcccagctttcgccttccattcccattccggatccgcaaccatgatggctcctccgccgcacgtggtggccgctccgccgcgtgccgggccgatctccgtcggggtcaagatcttccagaccgaaggcgtcaaagccttgttctccggcgtctccgccaccgtgctccgccagactctctactccaccacccggatgggtctctacgacatcctcaagaccaagtggtccgacccgga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

128

Amino Acids

13.47

Weight (kDa)

9.92

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011844)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24570
fragaria_vesca FvH4_5g35620
malus_domestica MD08G1195400.v1.1 MD15G1383200.v1.1
prunus_persica Prupe.1G529200_v2.0.a1 Prupe.8G067800_v2.0.a1
pyrus_communis pycom15g34310
rosa_chinensis RchiOBHm_Chr7g0237101
rosa_laevigata RLG00000001033
rosa_multiflora Rmu_sc0000272.1_g000004 Rmu_sc0002131.1_g000039 Rmu_sc0033615.1_g000001
rosa_roxburghii Rroxscaffold_3G00224510
rosa_rugosa Rorug07G0301800
rosa_samantha Rh7AG458000 Rh7BG428700 Rh7CG476100 Rh7DG445300
rosa_wichuraiana Rw7G037960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 373
AccB7I CCANNNNNTGG 1 cut(s) 67
AccBSI CCGCTC 1 cut(s) 221
AccII CGCG 1 cut(s) 229
AccIII TCCGGA 1 cut(s) 176
AciI CCGC 9 cut(s) 117, 183, 203, 206, 219, 224, 227, 303, 316
AclWI GGATC 3 cut(s) 78, 174, 187
AcoI YGGCCR 1 cut(s) 216
AcvI CACGTG 1 cut(s) 211
AcyI GRCGYC 2 cut(s) 276, 297
AdeI CACNNNGTG 1 cut(s) 214
AfiI CCNNNNNNNGG 3 cut(s) 67, 233, 339
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 3 cut(s) 35, 94, 155
AluI AGCT 3 cut(s) 35, 94, 155
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 2 cut(s) 304, 353
AlwI GGATC 3 cut(s) 78, 174, 187
Aor13HI TCCGGA 1 cut(s) 176
AoxI GGCC 4 cut(s) 109, 123, 216, 236
ApeKI GCWGC 3 cut(s) 51, 91, 130
AspS9I GGNCC 5 cut(s) 82, 109, 124, 236, 375
AsuC2I CCSGG 4 cut(s) 122, 235, 340, 383
AvaII GGWCC 2 cut(s) 82, 375
BamHI GGATCC 1 cut(s) 179
BbrPI CACGTG 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 3 cut(s) 38, 103, 142
BccI CCATC 4 cut(s) 47, 143, 187, 337
BciT130I CCWGG 1 cut(s) 98
BcnI CCSGG 4 cut(s) 122, 235, 340, 383
BcoDI GTCTC 2 cut(s) 304, 353
BglII AGATCT 1 cut(s) 258
BisI GCNGC 6 cut(s) 52, 92, 131, 206, 219, 227
BlsI GCNGC 6 cut(s) 53, 93, 132, 207, 220, 228
Bme1390I CCNGG 5 cut(s) 98, 122, 235, 340, 383
Bme18I GGWCC 2 cut(s) 82, 375
BmgT120I GGNCC 5 cut(s) 82, 109, 124, 236, 375
BmiI GGNNCC 2 cut(s) 181, 198
BmrFI CCNGG 5 cut(s) 98, 122, 235, 340, 383
BpmI CTGGAG 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 347
BpuMI CCSGG 4 cut(s) 122, 235, 340, 383
BsaAI YACGTR 1 cut(s) 211
BsaHI GRCGYC 2 cut(s) 276, 297
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 2 cut(s) 97, 120
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 233, 339
Bse118I RCCGGY 1 cut(s) 47
BseAI TCCGGA 1 cut(s) 176
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 2 cut(s) 97, 120
BseGI GGATG 3 cut(s) 135, 348, 357
BseLI CCNNNNNNNGG 3 cut(s) 67, 233, 339
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 3 cut(s) 38, 103, 142
BseYI CCCAGC 2 cut(s) 126, 151
Bsh1236I CGCG 1 cut(s) 229
BshFI GGCC 4 cut(s) 111, 125, 218, 238
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 7 cut(s) 48, 122, 177, 234, 294, 340, 383
BslI CCNNNNNNNGG 3 cut(s) 67, 233, 339
BsmAI GTCTC 2 cut(s) 304, 353
BsmBI CGTCTC 1 cut(s) 304
BsmI GAATGC 1 cut(s) 93
BsnI GGCC 4 cut(s) 111, 125, 218, 238
Bso31I GGTCTC 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 315
Bsp13I TCCGGA 1 cut(s) 176
Bsp143I GATC 4 cut(s) 70, 179, 240, 258
BspACI CCGC 9 cut(s) 117, 183, 203, 206, 219, 224, 227, 303, 316
BspANI GGCC 4 cut(s) 111, 125, 218, 238
BspEI TCCGGA 1 cut(s) 176
BspFNI CGCG 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 181, 198
BspPI GGATC 3 cut(s) 78, 174, 187
BspQI GCTCTTC 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 353
BsrBI CCGCTC 1 cut(s) 221
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 97, 120
BssMI GATC 4 cut(s) 70, 179, 240, 258
BssNI GRCGYC 2 cut(s) 276, 297
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 310
Bst6I CTCTTC 1 cut(s) 150
BstACI GRCGYC 2 cut(s) 276, 297
BstBAI YACGTR 1 cut(s) 211
BstC8I GCNNGC 2 cut(s) 49, 231
BstF5I GGATG 3 cut(s) 135, 348, 357
BstFNI CGCG 1 cut(s) 229
BstKTI GATC 4 cut(s) 73, 182, 243, 261
BstMAI GTCTC 2 cut(s) 304, 353
BstMBI GATC 4 cut(s) 70, 179, 240, 258
BstMWI GCNNNNNNNGC 2 cut(s) 108, 235
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 5 cut(s) 96, 120, 233, 338, 381
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 3 cut(s) 38, 103, 142
BstX2I RGATCY 3 cut(s) 70, 179, 258
BstXI CCANNNNNNTGG 1 cut(s) 343
BstYI RGATCY 3 cut(s) 70, 179, 258
BsuRI GGCC 4 cut(s) 111, 125, 218, 238
BtsCI GGATG 3 cut(s) 135, 348, 357
Cac8I GCNNGC 2 cut(s) 49, 231
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 5 cut(s) 82, 109, 124, 236, 375
CseI GACGC 2 cut(s) 265, 286
CviAII CATG 1 cut(s) 190
DpnI GATC 4 cut(s) 72, 181, 242, 260
DpnII GATC 4 cut(s) 70, 179, 240, 258
DraIII CACNNNGTG 1 cut(s) 214
DrdI GACNNNNNNGTC 1 cut(s) 373
DseDI GACNNNNNNGTC 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
EciI GGCGGA 4 cut(s) 192, 213, 292, 305
Eco31I GGTCTC 1 cut(s) 353
Eco47I GGWCC 2 cut(s) 82, 375
Eco72I CACGTG 1 cut(s) 211
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 96
Esp3I CGTCTC 1 cut(s) 304
FaeI CATG 1 cut(s) 193
FaiI YATR 1 cut(s) 191
FatI CATG 1 cut(s) 189
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 6 cut(s) 52, 92, 131, 206, 219, 227
FokI GGATG 3 cut(s) 122, 344, 355
Fsp4HI GCNGC 6 cut(s) 52, 92, 131, 206, 219, 227
GluI GCNGC 6 cut(s) 52, 92, 131, 206, 219, 227
GsaI CCCAGC 2 cut(s) 130, 155
GsuI CTGGAG 1 cut(s) 80
HaeIII GGCC 4 cut(s) 111, 125, 218, 238
HapII CCGG 7 cut(s) 48, 122, 177, 234, 294, 340, 383
HgaI GACGC 2 cut(s) 265, 286
Hin1I GRCGYC 2 cut(s) 276, 297
Hin1II CATG 1 cut(s) 193
HinfI GANTC 1 cut(s) 322
HpaII CCGG 7 cut(s) 48, 122, 177, 234, 294, 340, 383
Hpy188I TCNGA 2 cut(s) 86, 379
Hpy188III TCNNGA 4 cut(s) 177, 256, 265, 364
Hpy99I CGWCG 2 cut(s) 47, 251
HpyAV CCTTC 2 cut(s) 172, 266
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 235
HpySE526I ACGT 1 cut(s) 210
Hsp92I GRCGYC 2 cut(s) 276, 297
Hsp92II CATG 1 cut(s) 193
Kpn2I TCCGGA 1 cut(s) 176
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
Kzo9I GATC 4 cut(s) 70, 179, 240, 258
LguI GCTCTTC 1 cut(s) 150
LmnI GCTCC 5 cut(s) 59, 99, 202, 226, 318
Lsp1109I GCAGC 3 cut(s) 38, 103, 142
MaeII ACGT 1 cut(s) 210
MalI GATC 4 cut(s) 72, 181, 242, 260
MbiI CCGCTC 1 cut(s) 221
MboI GATC 4 cut(s) 70, 179, 240, 258
MboII GAAGA 2 cut(s) 137, 253
MflI RGATCY 3 cut(s) 70, 179, 258
MhlI GDGCHC 1 cut(s) 315
MlyI GAGTC 1 cut(s) 316
MnlI CCTC 4 cut(s) 16, 20, 210, 371
MroI TCCGGA 1 cut(s) 176
MroNI GCCGGC 1 cut(s) 47
MslI CAYNNNNRTG 1 cut(s) 341
MspI CCGG 7 cut(s) 48, 122, 177, 234, 294, 340, 383
MspR9I CCNGG 5 cut(s) 98, 122, 235, 340, 383
Mva1269I GAATGC 1 cut(s) 93
MvaI CCWGG 1 cut(s) 98
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 2 cut(s) 108, 235
NaeI GCCGGC 1 cut(s) 49
NciI CCSGG 4 cut(s) 122, 235, 340, 383
NdeII GATC 4 cut(s) 70, 179, 240, 258
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 2 cut(s) 181, 198
PciSI GCTCTTC 1 cut(s) 150
PctI GAATGC 1 cut(s) 93
PdiI GCCGGC 1 cut(s) 49
PflMI CCANNNNNTGG 1 cut(s) 67
PkrI GCNGC 6 cut(s) 53, 93, 132, 207, 220, 228
PleI GAGTC 1 cut(s) 316
PmaCI CACGTG 1 cut(s) 211
PmlI CACGTG 1 cut(s) 211
PpsI GAGTC 1 cut(s) 316
Ppu21I YACGTR 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 96
PspCI CACGTG 1 cut(s) 211
PspFI CCCAGC 2 cut(s) 126, 151
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 2 cut(s) 181, 198
PspPI GGNCC 5 cut(s) 82, 109, 124, 236, 375
PsuI RGATCY 3 cut(s) 70, 179, 258
RseI CAYNNNNRTG 1 cut(s) 341
SapI GCTCTTC 1 cut(s) 150
SatI GCNGC 6 cut(s) 52, 92, 131, 206, 219, 227
Sau3AI GATC 4 cut(s) 70, 179, 240, 258
Sau96I GGNCC 5 cut(s) 82, 109, 124, 236, 375
SchI GAGTC 1 cut(s) 316
ScrFI CCNGG 5 cut(s) 98, 122, 235, 340, 383
SduI GDGCHC 1 cut(s) 315
SetI ASST 6 cut(s) 16, 37, 84, 96, 157, 213
SinI GGWCC 2 cut(s) 82, 375
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SsiI CCGC 9 cut(s) 117, 183, 203, 206, 219, 224, 227, 303, 316
StyD4I CCNGG 5 cut(s) 96, 120, 233, 338, 381
TaaI ACNGT 1 cut(s) 310
TaiI ACGT 1 cut(s) 213
TaqII GACCGA 1 cut(s) 284
TauI GCSGC 3 cut(s) 208, 221, 229
TseI GCWGC 3 cut(s) 51, 91, 130
TspGWI ACGGA 1 cut(s) 235
Van91I CCANNNNNTGG 1 cut(s) 67
VpaK11BI GGWCC 2 cut(s) 82, 375
XcmI CCANNNNNNNNNTGG 2 cut(s) 64, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.