MD08G1195400.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
25209898 .. 25210871
974 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1195400.v1.1.491

Sequence Viewer

Length: 954 bp
ATGGGTATCAAAGGATTTGTCGAGGGAGGCGTCGCTTCCATTGTCGCCGGCTGCTCCACCCACCCGCTGGATCTTATCAAGGTCCGTATGCAGCTCCAGGGCGAGAACAACCCCGCCCGGGCTGCCGCCCCCCAGCACATCCACAATCTCCGCCCTGCTTTTGCTTTTCATTCCCATTCTGCCACCCTGGTTGCCCCGCCTCCGCCGGCCGCCGCCGCACGCGCCGGTCCAATCTCGGTCGGAGTCAAAATTGTTCAGACCGAAGGTGTTAAGGCGTTGTTCTCTGGAGTCTCCGCCACCGTCCTCCGCCAGACTCTCTACTCCACCACCCGAATGGGCCTCTACGAAATTTTGAAAGTCAGATGGGCAGACTCGAACTCCGGAAACCTACCCCTGCCCCGAAAAATTCTCGCTGGACTCGTCGCCGGTGGAGTTGGTGCCGCCGTCGGAAACCCCGCCGACGTGGCCATGGTCCGGATGCAGGCTGGCGGCCGTGACTACAAGAACGTGATCGACGCGATTACGAAGATGGCGAGGAGCGAAGGGGTTCTTAGCCTGTGGCGCGGGTCCAGCCTTACGGTAAACCGCGCGATGATCGTTACGGCGTCGCAGCTGGCGTCTTACGACCAGTTCAAGGAGGCGATTCTCGATAGGCACTTGATGAAGGACGGCCTCGGGACTCACGTGACCGCGAGTTTCGCGGCGGGGTTTGTGGCCTCCGTGGCCTCGAACCCGATCGACGTGATTAAGACGAGGGTTATGAACATGAAGGTGGAAGCCGGGCGGGACCCGCCGTACACTGGGGCCCTGGACTGTGCCCTAAAGACTGTGAGAGCGGAGGGGCCCATGGCCCTTTACAAGGGCTTCATCCCTACGATTTCGAGGCAGGGGCCATTCACTGTGGTGCTGTTTGTGACGCTTGAGCAGATCAGGAAGGTGCTTAAGGACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

318

Amino Acids

33.63

Weight (kDa)

9.96

Isoelectric Point (pI)

27.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 5 - 122 7.2e-17 Mitochondrial carrier protein
Mito_carr PF00153 130 - 217 7.9e-20 Mitochondrial carrier protein
Mito_carr PF00153 225 - 316 1.2e-20 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011844)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 437
AccB7I CCANNNNNTGG 1 cut(s) 67
AccBSI CCGCTC 1 cut(s) 836
AccII CGCG 7 cut(s) 222, 518, 564, 588, 590, 692, 701
AccIII TCCGGA 2 cut(s) 380, 474
AclWI GGATC 1 cut(s) 78
AcoI YGGCCR 3 cut(s) 207, 465, 490
AcsI RAATTY 2 cut(s) 348, 405
AcvI CACGTG 1 cut(s) 685
AcyI GRCGYC 3 cut(s) 30, 605, 617
AfaI GTAC 1 cut(s) 797
AfiI CCNNNNNNNGG 7 cut(s) 67, 118, 474, 481, 634, 800, 859
AflII CTTAAG 1 cut(s) 941
AgsI TTSAA 2 cut(s) 355, 634
AjiI CACGTC 2 cut(s) 463, 742
AjnI CCWGG 3 cut(s) 96, 186, 807
AleI CACNNNNGTG 1 cut(s) 902
AluBI AGCT 2 cut(s) 94, 613
AluI AGCT 2 cut(s) 94, 613
Alw26I GTCTC 1 cut(s) 295
AlwI GGATC 1 cut(s) 78
Ama87I CYCGRG 2 cut(s) 117, 674
Aor13HI TCCGGA 2 cut(s) 380, 474
ApaI GGGCCC 2 cut(s) 808, 846
ApeKI GCWGC 4 cut(s) 51, 91, 122, 610
ApoI RAATTY 2 cut(s) 348, 405
ArsI GACNNNNNNTTYG 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 546
AspLEI GCGC 3 cut(s) 224, 564, 590
AsuC2I CCSGG 3 cut(s) 118, 119, 781
AvaI CYCGRG 2 cut(s) 117, 674
AvaII GGWCC 5 cut(s) 82, 227, 472, 567, 787
BaeGI GKGCMC 3 cut(s) 808, 820, 846
BalI TGGCCA 1 cut(s) 467
BanI GGYRCC 1 cut(s) 437
BanII GRGCYC 2 cut(s) 808, 846
BbrPI CACGTG 1 cut(s) 685
BbvI GCAGC 4 cut(s) 38, 103, 109, 622
BccI CCATC 2 cut(s) 357, 523
BceAI ACGGC 5 cut(s) 428, 477, 618, 685, 778
BciT130I CCWGG 3 cut(s) 98, 188, 809
BcnI CCSGG 3 cut(s) 118, 119, 781
BcoDI GTCTC 1 cut(s) 295
BfrI CTTAAG 1 cut(s) 941
BglI GCCNNNNNGGC 2 cut(s) 464, 722
Bme1390I CCNGG 6 cut(s) 98, 118, 119, 188, 781, 809
Bme18I GGWCC 5 cut(s) 82, 227, 472, 567, 787
BmeT110I CYCGRG 2 cut(s) 117, 674
BmgBI CACGTC 2 cut(s) 463, 742
BmiI GGNNCC 9 cut(s) 439, 568, 788, 789, 805, 806, 843, 844, 891
BmrFI CCNGG 6 cut(s) 98, 118, 119, 188, 781, 809
BmrI ACTGGG 1 cut(s) 810
BmsI GCATC 1 cut(s) 468
BmuI ACTGGG 1 cut(s) 810
BpmI CTGGAG 2 cut(s) 80, 306
BpuEI CTTGAG 1 cut(s) 941
BpuMI CCSGG 3 cut(s) 118, 119, 781
BsaAI YACGTR 1 cut(s) 685
BsaHI GRCGYC 3 cut(s) 30, 605, 617
BsaJI CCNNGG 8 cut(s) 97, 117, 186, 468, 673, 720, 807, 846
BsaWI WCCGGW 2 cut(s) 380, 474
BsaXI ACNNNNNCTCC 2 cut(s) 362, 392
Bsc4I CCNNNNNNNGG 7 cut(s) 67, 118, 474, 481, 634, 800, 859
Bse118I RCCGGY 4 cut(s) 47, 205, 224, 425
Bse1I ACTGG 2 cut(s) 628, 805
BseAI TCCGGA 2 cut(s) 380, 474
BseBI CCWGG 3 cut(s) 98, 188, 809
BseDI CCNNGG 8 cut(s) 97, 117, 186, 468, 673, 720, 807, 846
BseGI GGATG 3 cut(s) 138, 483, 867
BseLI CCNNNNNNNGG 7 cut(s) 67, 118, 474, 481, 634, 800, 859
BseNI ACTGG 2 cut(s) 628, 805
BseRI GAGGAG 1 cut(s) 550
BseSI GKGCMC 3 cut(s) 808, 820, 846
BseX3I CGGCCG 2 cut(s) 207, 490
BseXI GCAGC 4 cut(s) 38, 103, 109, 622
BseYI CCCAGC 1 cut(s) 132
Bsh1236I CGCG 7 cut(s) 222, 518, 564, 588, 590, 692, 701
Bsh1285I CGRYCG 4 cut(s) 210, 240, 493, 738
BshNI GGYRCC 1 cut(s) 437
BsiEI CGRYCG 4 cut(s) 210, 240, 493, 738
BsiHKCI CYCGRG 2 cut(s) 117, 674
BsiSI CCGG 8 cut(s) 48, 118, 206, 225, 381, 426, 475, 780
BslFI GGGAC 2 cut(s) 691, 800
BslI CCNNNNNNNGG 7 cut(s) 67, 118, 474, 481, 634, 800, 859
BsmAI GTCTC 1 cut(s) 295
BsmFI GGGAC 2 cut(s) 691, 800
BsoBI CYCGRG 2 cut(s) 117, 674
Bsp120I GGGCCC 2 cut(s) 804, 842
Bsp1286I GDGCHC 3 cut(s) 808, 820, 846
Bsp13I TCCGGA 2 cut(s) 380, 474
Bsp143I GATC 5 cut(s) 70, 510, 594, 735, 927
Bsp19I CCATGG 2 cut(s) 468, 846
BspEI TCCGGA 2 cut(s) 380, 474
BspFNI CGCG 7 cut(s) 222, 518, 564, 588, 590, 692, 701
BspLI GGNNCC 9 cut(s) 439, 568, 788, 789, 805, 806, 843, 844, 891
BspPI GGATC 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 437
BspTI CTTAAG 1 cut(s) 941
BsrBI CCGCTC 1 cut(s) 836
BsrFI RCCGGY 4 cut(s) 47, 205, 224, 425
BsrI ACTGG 2 cut(s) 628, 805
BssAI RCCGGY 4 cut(s) 47, 205, 224, 425
BssECI CCNNGG 8 cut(s) 97, 117, 186, 468, 673, 720, 807, 846
BssMI GATC 5 cut(s) 70, 510, 594, 735, 927
BssNI GRCGYC 3 cut(s) 30, 605, 617
BssT1I CCWWGG 2 cut(s) 468, 846
Bst2UI CCWGG 3 cut(s) 98, 188, 809
Bst4CI ACNGT 5 cut(s) 301, 580, 815, 829, 901
BstACI GRCGYC 3 cut(s) 30, 605, 617
BstAFI CTTAAG 1 cut(s) 941
BstBAI YACGTR 1 cut(s) 685
BstC8I GCNNGC 6 cut(s) 49, 207, 220, 483, 487, 615
BstDEI CTNAG 1 cut(s) 551
BstDSI CCRYGG 3 cut(s) 468, 720, 846
BstENI CCTNNNNNAGG 1 cut(s) 857
BstF5I GGATG 3 cut(s) 138, 483, 867
BstFNI CGCG 7 cut(s) 222, 518, 564, 588, 590, 692, 701
BstHHI GCGC 3 cut(s) 224, 564, 590
BstKTI GATC 5 cut(s) 73, 513, 597, 738, 930
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 5 cut(s) 70, 510, 594, 735, 927
BstMCI CGRYCG 4 cut(s) 210, 240, 493, 738
BstMWI GCNNNNNNNGC 9 cut(s) 122, 215, 221, 464, 561, 570, 698, 722, 790
BstNI CCWGG 3 cut(s) 98, 188, 809
BstSCI CCNGG 6 cut(s) 96, 116, 117, 186, 779, 807
BstSLI GKGCMC 3 cut(s) 808, 820, 846
BstUI CGCG 7 cut(s) 222, 518, 564, 588, 590, 692, 701
BstV1I GCAGC 4 cut(s) 38, 103, 109, 622
BstX2I RGATCY 1 cut(s) 70
BstXI CCANNNNNNTGG 1 cut(s) 334
BstYI RGATCY 1 cut(s) 70
BstZI CGGCCG 2 cut(s) 207, 490
BtgI CCRYGG 3 cut(s) 468, 720, 846
BtgZI GCGATG 1 cut(s) 605
BtrI CACGTC 2 cut(s) 463, 742
BtsCI GGATG 3 cut(s) 138, 483, 867
BtsIMutI CAGTG 2 cut(s) 798, 897
Cac8I GCNNGC 6 cut(s) 49, 207, 220, 483, 487, 615
CfoI GCGC 3 cut(s) 224, 564, 590
Cfr10I RCCGGY 4 cut(s) 47, 205, 224, 425
Cfr9I CCCGGG 1 cut(s) 117
CseI GACGC 5 cut(s) 19, 524, 594, 606, 925
Csp6I GTAC 1 cut(s) 796
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 3 cut(s) 469, 766, 847
CviQI GTAC 1 cut(s) 796
DdeI CTNAG 1 cut(s) 551
DpnI GATC 5 cut(s) 72, 512, 596, 737, 929
DpnII GATC 5 cut(s) 70, 510, 594, 735, 927
EaeI YGGCCR 3 cut(s) 207, 465, 490
EagI CGGCCG 2 cut(s) 207, 490
EciI GGCGGA 4 cut(s) 140, 192, 283, 296
EclXI CGGCCG 2 cut(s) 207, 490
Eco130I CCWWGG 2 cut(s) 468, 846
Eco24I GRGCYC 2 cut(s) 808, 846
Eco47I GGWCC 5 cut(s) 82, 227, 472, 567, 787
Eco52I CGGCCG 2 cut(s) 207, 490
Eco72I CACGTG 1 cut(s) 685
Eco88I CYCGRG 2 cut(s) 117, 674
EcoNI CCTNNNNNAGG 1 cut(s) 857
EcoO109I RGGNCCY 4 cut(s) 787, 804, 805, 842
EcoRII CCWGG 3 cut(s) 96, 186, 807
EcoT14I CCWWGG 2 cut(s) 468, 846
EcoT38I GRGCYC 2 cut(s) 808, 846
ErhI CCWWGG 2 cut(s) 468, 846
FaeI CATG 3 cut(s) 472, 769, 850
FaiI YATR 5 cut(s) 89, 470, 761, 767, 848
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FaqI GGGAC 2 cut(s) 691, 800
FatI CATG 3 cut(s) 468, 765, 846
FauI CCCGC 8 cut(s) 72, 121, 204, 463, 557, 697, 777, 798
FokI GGATG 3 cut(s) 125, 490, 854
FriOI GRGCYC 2 cut(s) 808, 846
GlaI GCGC 3 cut(s) 223, 563, 589
GsaI CCCAGC 1 cut(s) 136
GsuI CTGGAG 2 cut(s) 80, 306
HapII CCGG 8 cut(s) 48, 118, 206, 225, 381, 426, 475, 780
HgaI GACGC 5 cut(s) 19, 524, 594, 606, 925
HhaI GCGC 3 cut(s) 224, 564, 590
Hin1I GRCGYC 3 cut(s) 30, 605, 617
Hin1II CATG 3 cut(s) 472, 769, 850
Hin6I GCGC 3 cut(s) 222, 562, 588
HinP1I GCGC 3 cut(s) 222, 562, 588
HinfI GANTC 7 cut(s) 243, 288, 313, 371, 417, 643, 679
HpaII CCGG 8 cut(s) 48, 118, 206, 225, 381, 426, 475, 780
Hpy166II GTNNAC 2 cut(s) 583, 798
Hpy188I TCNGA 4 cut(s) 242, 258, 362, 449
Hpy188III TCNNGA 6 cut(s) 285, 381, 475, 647, 676, 931
Hpy8I GTNNAC 2 cut(s) 583, 798
Hpy99I CGWCG 7 cut(s) 35, 425, 449, 464, 518, 610, 743
HpyAV CCTTC 5 cut(s) 257, 536, 658, 763, 928
HpyCH4III ACNGT 5 cut(s) 301, 580, 815, 829, 901
HpyCH4IV ACGT 4 cut(s) 462, 507, 684, 741
HpyCH4V TGCA 2 cut(s) 91, 481
HpyF10VI GCNNNNNNNGC 9 cut(s) 122, 215, 221, 464, 561, 570, 698, 722, 790
HpyF3I CTNAG 1 cut(s) 551
HpySE526I ACGT 4 cut(s) 462, 507, 684, 741
Hsp92I GRCGYC 3 cut(s) 30, 605, 617
Hsp92II CATG 3 cut(s) 472, 769, 850
HspAI GCGC 3 cut(s) 222, 562, 588
KflI GGGWCCC 1 cut(s) 787
Kpn2I TCCGGA 2 cut(s) 380, 474
KroI GCCGGC 2 cut(s) 47, 205
KroNI GCCGGC 2 cut(s) 49, 207
Kzo9I GATC 5 cut(s) 70, 510, 594, 735, 927
LmnI GCTCC 3 cut(s) 59, 99, 537
Lsp1109I GCAGC 4 cut(s) 38, 103, 109, 622
LweI GCATC 1 cut(s) 468
MaeII ACGT 4 cut(s) 462, 507, 684, 741
MaeIII GTNAC 4 cut(s) 494, 598, 685, 913
MalI GATC 5 cut(s) 72, 512, 596, 737, 929
MbiI CCGCTC 1 cut(s) 836
MboI GATC 5 cut(s) 70, 510, 594, 735, 927
MboII GAAGA 1 cut(s) 538
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 3 cut(s) 808, 820, 846
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 3 cut(s) 249, 348, 405
MluNI TGGCCA 1 cut(s) 467
MlyI GAGTC 6 cut(s) 252, 297, 307, 365, 411, 673
MmeI TCCRAC 2 cut(s) 220, 427
Mox20I TGGCCA 1 cut(s) 467
MroI TCCGGA 2 cut(s) 380, 474
MroNI GCCGGC 2 cut(s) 47, 205
MroXI GAANNNNTTC 1 cut(s) 546
MscI TGGCCA 1 cut(s) 467
MseI TTAA 3 cut(s) 270, 747, 942
MslI CAYNNNNRTG 3 cut(s) 332, 770, 902
Msp20I TGGCCA 1 cut(s) 467
MspA1I CMGCKG 2 cut(s) 67, 613
MspCI CTTAAG 1 cut(s) 941
MspI CCGG 8 cut(s) 48, 118, 206, 225, 381, 426, 475, 780
MspR9I CCNGG 6 cut(s) 98, 118, 119, 188, 781, 809
MvaI CCWGG 3 cut(s) 98, 188, 809
MvnI CGCG 7 cut(s) 222, 518, 564, 588, 590, 692, 701
MwoI GCNNNNNNNGC 9 cut(s) 122, 215, 221, 464, 561, 570, 698, 722, 790
NaeI GCCGGC 2 cut(s) 49, 207
NciI CCSGG 3 cut(s) 118, 119, 781
NcoI CCATGG 2 cut(s) 468, 846
NdeII GATC 5 cut(s) 70, 510, 594, 735, 927
NgoMIV GCCGGC 2 cut(s) 47, 205
NlaIII CATG 3 cut(s) 472, 769, 850
NlaIV GGNNCC 9 cut(s) 439, 568, 788, 789, 805, 806, 843, 844, 891
NmuCI GTSAC 3 cut(s) 494, 685, 913
OliI CACNNNNGTG 1 cut(s) 902
PcsI WCGNNNNNNNCGW 5 cut(s) 27, 417, 530, 614, 681
PdiI GCCGGC 2 cut(s) 49, 207
PdmI GAANNNNTTC 1 cut(s) 546
PfeI GAWTC 1 cut(s) 643
PflMI CCANNNNNTGG 1 cut(s) 67
Ple19I CGATCG 1 cut(s) 738
PleI GAGTC 6 cut(s) 251, 296, 307, 365, 411, 673
PmaCI CACGTG 1 cut(s) 685
PmlI CACGTG 1 cut(s) 685
PpsI GAGTC 6 cut(s) 251, 296, 307, 365, 411, 673
Ppu21I YACGTR 1 cut(s) 685
PpuMI RGGWCCY 1 cut(s) 787
Psp5II RGGWCCY 1 cut(s) 787
Psp6I CCWGG 3 cut(s) 96, 186, 807
PspCI CACGTG 1 cut(s) 685
PspFI CCCAGC 1 cut(s) 132
PspGI CCWGG 3 cut(s) 96, 186, 807
PspN4I GGNNCC 9 cut(s) 439, 568, 788, 789, 805, 806, 843, 844, 891
PspOMI GGGCCC 2 cut(s) 804, 842
PspPPI RGGWCCY 1 cut(s) 787
PsuI RGATCY 1 cut(s) 70
PvuI CGATCG 1 cut(s) 738
PvuII CAGCTG 1 cut(s) 613
RsaI GTAC 1 cut(s) 797
RsaNI GTAC 1 cut(s) 796
RseI CAYNNNNRTG 3 cut(s) 332, 770, 902
SaqAI TTAA 3 cut(s) 270, 747, 942
Sau3AI GATC 5 cut(s) 70, 510, 594, 735, 927
SchI GAGTC 6 cut(s) 252, 297, 307, 365, 411, 673
ScrFI CCNGG 6 cut(s) 98, 118, 119, 188, 781, 809
SduI GDGCHC 3 cut(s) 808, 820, 846
SfaNI GCATC 1 cut(s) 468
SfiI GGCCNNNNNGGCC 1 cut(s) 722
SgrAI CRCCGGYG 1 cut(s) 425
SinI GGWCC 5 cut(s) 82, 227, 472, 567, 787
SmaI CCCGGG 1 cut(s) 119
SmiMI CAYNNNNRTG 3 cut(s) 332, 770, 902
SmlI CTYRAG 2 cut(s) 920, 941
SmoI CTYRAG 2 cut(s) 920, 941
SrfI GCCCGGGC 1 cut(s) 119
Sse9I AATT 3 cut(s) 249, 348, 405
StyD4I CCNGG 6 cut(s) 96, 116, 117, 186, 779, 807
StyI CCWWGG 2 cut(s) 468, 846
TaaI ACNGT 5 cut(s) 301, 580, 815, 829, 901
TaiI ACGT 4 cut(s) 465, 510, 687, 744
TaqI TCGA 7 cut(s) 21, 374, 513, 648, 728, 738, 881
TaqII GACCGA 2 cut(s) 226, 275
TasI AATT 3 cut(s) 249, 348, 405
TauI GCSGC 7 cut(s) 128, 212, 215, 218, 443, 492, 704
TfiI GAWTC 1 cut(s) 643
Tru1I TTAA 3 cut(s) 270, 747, 942
Tru9I TTAA 3 cut(s) 270, 747, 942
TscAI CASTG 2 cut(s) 805, 904
TseFI GTSAC 3 cut(s) 494, 685, 913
TseI GCWGC 4 cut(s) 51, 91, 122, 610
Tsp45I GTSAC 3 cut(s) 494, 685, 913
TspDTI ATGAA 5 cut(s) 158, 677, 776, 782, 856
TspGWI ACGGA 2 cut(s) 74, 709
TspMI CCCGGG 1 cut(s) 117
TspRI CASTG 2 cut(s) 805, 904
Van91I CCANNNNNTGG 1 cut(s) 67
Vha464I CTTAAG 1 cut(s) 941
VpaK11BI GGWCC 5 cut(s) 82, 227, 472, 567, 787
XagI CCTNNNNNAGG 1 cut(s) 857
XapI RAATTY 2 cut(s) 348, 405
XcmI CCANNNNNNNNNTGG 2 cut(s) 64, 331
XmaI CCCGGG 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.