AT4G25550

Cleavage and polyadenylation specificity factor subunit 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015102
Physical Location & Seq
Forward (+)
13048367 .. 13051273
2907 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G25550.1

Sequence Viewer

Length: 603 bp
ATGGCTATGTCTCAGGTGGTGAACACGTACCCGCTTTCGAACTACAGCTTCGGAACTAAGGAACCCAAGCTGGAAAAGGACACCTCCGTCGCCGACCGGCTCGCTCGTATGAAAATCAACTATATGAAAGAGGGCATGAGGACTAGCGTTGAAGGGATTCTACTGGTGCAAGAACACAACCATCCTCATATACTTCTGCTACAAATTGGTAACACATTCTGCAAACTTCCAGGTGGACGCCTGAAGCCTGGTGAAAATGAAGCTGATGGTCTGAAAAGAAAGCTGACCAGTAAACTTGGAGGCAATTCGGCTGCTCTTGTACCTGACTGGACGGTAGGAGAATGTGTTGCGACATGGTGGCGTCCAAACTTTGAAACCATGATGTACCCGTATTGCCCTCCTCACATCACGAAACCAAAGGAATGCAAGAGACTCTACATTGTTCACTTGTCTGAGAAAGAGTACTTTGCTGTGCCCAAAAATTTGAAGCTCTTGGCCGTCCCTTTGTTCGAACTCTATGACAATGTTCAGAGATATGGACCGGTTATATCAACCATTCCGCAGCAGCTATCCAGATTCCATTTCAACATGATTAGTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010608 GO:0010628 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0017091 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031325 GO:0031437 GO:0031439 GO:0031440 GO:0031442 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042382 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050684 GO:0050685 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051259 GO:0051262 GO:0051290 GO:0051291 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0110104 GO:1900363 GO:1900365 GO:1901360 GO:1901363 GO:1901532 GO:1901534 GO:1903311 GO:1903313 GO:1903706 GO:1903708 GO:1905456 GO:1905458 GO:1990120 GO:2000026 GO:2000736 GO:2000738 GO:2000973 GO:2000975
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
NUDIX_2

Protein Analysis

200

Amino Acids

22.83

Weight (kDa)

9.21

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX_2 PF13869 6 - 193 1.4e-86 Nucleotide hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25550
fragaria_vesca FvH4_7g29390
malus_domestica MD01G1199900.v1.1 MD07G1267800.v1.1
prunus_persica Prupe.2G293500_v2.0.a1
pyrus_communis pycom07g24540
rosa_chinensis RchiOBHm_Chr1g0377171
rosa_laevigata RLG00000026539
rosa_multiflora Rmu_ssc0000155.1_g000015
rosa_roxburghii Rroxscaffold_4G00281410
rosa_rugosa Rorug01G0401800
rosa_samantha Rh1AG419200 Rh1BG378300 Rh1CG392300 Rh1DG409000
rosa_wichuraiana Rw1G036770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
AciI CCGC 2 cut(s) 32, 560
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 1 cut(s) 481
AcuI CTGAAG 1 cut(s) 263
AcyI GRCGYC 2 cut(s) 238, 361
AfaI GTAC 4 cut(s) 29, 321, 386, 464
AflIII ACRYGT 1 cut(s) 24
AgeI ACCGGT 1 cut(s) 541
AgsI TTSAA 4 cut(s) 152, 374, 487, 586
AjnI CCWGG 2 cut(s) 229, 247
AluBI AGCT 6 cut(s) 48, 70, 263, 283, 490, 568
AluI AGCT 6 cut(s) 48, 70, 263, 283, 490, 568
Alw26I GTCTC 2 cut(s) 15, 424
AoxI GGCC 1 cut(s) 495
ApeKI GCWGC 3 cut(s) 311, 562, 565
ApoI RAATTY 1 cut(s) 481
AsiGI ACCGGT 1 cut(s) 541
Asp700I GAANNNNTTC 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 539
AsuHPI GGTGA 2 cut(s) 31, 263
AsuII TTCGAA 2 cut(s) 38, 510
AvaII GGWCC 1 cut(s) 539
BaeGI GKGCMC 1 cut(s) 477
BarI GAAGNNNNNNTAC 2 cut(s) 144, 176
BbvI GCAGC 3 cut(s) 298, 574, 577
BccI CCATC 2 cut(s) 189, 260
BceAI ACGGC 1 cut(s) 482
BciT130I CCWGG 2 cut(s) 231, 249
BcoDI GTCTC 2 cut(s) 15, 424
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 43
BisI GCNGC 3 cut(s) 312, 563, 566
BlsI GCNGC 3 cut(s) 313, 564, 567
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 2 cut(s) 231, 249
Bme18I GGWCC 1 cut(s) 539
BmgT120I GGNCC 1 cut(s) 539
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 2 cut(s) 231, 249
Bpu14I TTCGAA 2 cut(s) 38, 510
BsaAI YACGTR 1 cut(s) 27
BsaHI GRCGYC 2 cut(s) 238, 361
BsaWI WCCGGW 1 cut(s) 541
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bse118I RCCGGY 2 cut(s) 96, 541
Bse1I ACTGG 3 cut(s) 168, 288, 332
BseBI CCWGG 2 cut(s) 231, 249
BseGI GGATG 1 cut(s) 181
BseMII CTCAG 2 cut(s) 26, 444
BseNI ACTGG 3 cut(s) 168, 288, 332
BseRI GAGGAG 1 cut(s) 390
BseSI GKGCMC 1 cut(s) 477
BseXI GCAGC 3 cut(s) 298, 574, 577
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 1 cut(s) 497
BshTI ACCGGT 1 cut(s) 541
BsiEI CGRYCG 1 cut(s) 97
BsiSI CCGG 2 cut(s) 97, 542
BslFI GGGAC 1 cut(s) 485
BsmAI GTCTC 2 cut(s) 15, 424
BsmFI GGGAC 1 cut(s) 485
BsmI GAATGC 1 cut(s) 428
BsnI GGCC 1 cut(s) 497
Bsp119I TTCGAA 2 cut(s) 38, 510
Bsp1286I GDGCHC 1 cut(s) 477
BspACI CCGC 2 cut(s) 32, 560
BspANI GGCC 1 cut(s) 497
BspCNI CTCAG 2 cut(s) 25, 445
BspLI GGNNCC 1 cut(s) 63
BspT104I TTCGAA 2 cut(s) 38, 510
BsrFI RCCGGY 2 cut(s) 96, 541
BsrI ACTGG 3 cut(s) 168, 288, 332
BssAI RCCGGY 2 cut(s) 96, 541
BssNI GRCGYC 2 cut(s) 238, 361
Bst2UI CCWGG 2 cut(s) 231, 249
Bst4CI ACNGT 1 cut(s) 334
BstACI GRCGYC 2 cut(s) 238, 361
BstBAI YACGTR 1 cut(s) 27
BstBI TTCGAA 2 cut(s) 38, 510
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 3 cut(s) 12, 57, 453
BstF5I GGATG 1 cut(s) 181
BstMAI GTCTC 2 cut(s) 15, 424
BstMCI CGRYCG 1 cut(s) 97
BstNI CCWGG 2 cut(s) 231, 249
BstSCI CCNGG 2 cut(s) 229, 247
BstSFI CTRYAG 1 cut(s) 43
BstSLI GKGCMC 1 cut(s) 477
BstV1I GCAGC 3 cut(s) 298, 574, 577
BsuRI GGCC 1 cut(s) 497
BtsCI GGATG 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 102
Cfr10I RCCGGY 2 cut(s) 96, 541
Cfr13I GGNCC 1 cut(s) 539
CseI GACGC 2 cut(s) 246, 350
Csp6I GTAC 4 cut(s) 28, 320, 385, 463
CspAI ACCGGT 1 cut(s) 541
CviAII CATG 4 cut(s) 136, 354, 379, 589
CviQI GTAC 4 cut(s) 28, 320, 385, 463
DdeI CTNAG 3 cut(s) 12, 57, 453
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
EaeI YGGCCR 1 cut(s) 495
Eco47I GGWCC 1 cut(s) 539
Eco57I CTGAAG 1 cut(s) 263
EcoRII CCWGG 2 cut(s) 229, 247
FaeI CATG 4 cut(s) 139, 357, 382, 592
FaqI GGGAC 1 cut(s) 485
FatI CATG 4 cut(s) 135, 353, 378, 588
FauI CCCGC 1 cut(s) 39
Fnu4HI GCNGC 3 cut(s) 312, 563, 566
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 3 cut(s) 312, 563, 566
FspBI CTAG 1 cut(s) 144
GluI GCNGC 3 cut(s) 312, 563, 566
HaeIII GGCC 1 cut(s) 497
HapII CCGG 2 cut(s) 97, 542
HgaI GACGC 2 cut(s) 246, 350
Hin1I GRCGYC 2 cut(s) 238, 361
Hin1II CATG 4 cut(s) 139, 357, 382, 592
HinfI GANTC 3 cut(s) 157, 432, 576
HpaII CCGG 2 cut(s) 97, 542
HphI GGTGA 2 cut(s) 31, 263
Hpy166II GTNNAC 4 cut(s) 22, 236, 293, 445
Hpy188I TCNGA 4 cut(s) 53, 273, 454, 531
Hpy188III TCNNGA 3 cut(s) 409, 573, 600
Hpy8I GTNNAC 4 cut(s) 22, 236, 293, 445
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 169, 222, 426
HpyF3I CTNAG 3 cut(s) 12, 57, 453
HpySE526I ACGT 1 cut(s) 26
Hsp92I GRCGYC 2 cut(s) 238, 361
Hsp92II CATG 4 cut(s) 139, 357, 382, 592
Lsp1109I GCAGC 3 cut(s) 298, 574, 577
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 3 cut(s) 204, 304, 481
MlyI GAGTC 1 cut(s) 426
MnlI CCTC 7 cut(s) 94, 124, 132, 195, 293, 408, 411
MroXI GAANNNNTTC 1 cut(s) 156
MspI CCGG 2 cut(s) 97, 542
MspR9I CCNGG 2 cut(s) 231, 249
Mva1269I GAATGC 1 cut(s) 428
MvaI CCWGG 2 cut(s) 231, 249
NlaIII CATG 4 cut(s) 139, 357, 382, 592
NlaIV GGNNCC 1 cut(s) 63
NspV TTCGAA 2 cut(s) 38, 510
PctI GAATGC 1 cut(s) 428
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 2 cut(s) 157, 576
PinAI ACCGGT 1 cut(s) 541
PkrI GCNGC 3 cut(s) 313, 564, 567
PleI GAGTC 1 cut(s) 426
PpsI GAGTC 1 cut(s) 426
Ppu21I YACGTR 1 cut(s) 27
Psp6I CCWGG 2 cut(s) 229, 247
PspGI CCWGG 2 cut(s) 229, 247
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 539
RsaI GTAC 4 cut(s) 29, 321, 386, 464
RsaNI GTAC 4 cut(s) 28, 320, 385, 463
SatI GCNGC 3 cut(s) 312, 563, 566
Sau96I GGNCC 1 cut(s) 539
ScaI AGTACT 1 cut(s) 464
SchI GAGTC 1 cut(s) 426
ScrFI CCNGG 2 cut(s) 231, 249
SduI GDGCHC 1 cut(s) 477
SfcI CTRYAG 1 cut(s) 43
SfuI TTCGAA 2 cut(s) 38, 510
SinI GGWCC 1 cut(s) 539
Sse9I AATT 3 cut(s) 204, 304, 481
SsiI CCGC 2 cut(s) 32, 560
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 2 cut(s) 229, 247
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 1 cut(s) 29
TaqI TCGA 2 cut(s) 38, 510
TasI AATT 3 cut(s) 204, 304, 481
TatI WGTACW 1 cut(s) 462
TfiI GAWTC 2 cut(s) 157, 576
TseI GCWGC 3 cut(s) 311, 562, 565
TspDTI ATGAA 3 cut(s) 125, 140, 273
TspGWI ACGGA 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 539
XapI RAATTY 1 cut(s) 481
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 1 cut(s) 144
ZrmI AGTACT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.