Rorug01G0401800

Cleavage and polyadenylation specificity factor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015102
Physical Location & Seq
Reverse (-)
50965700 .. 50967915
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0401800.1

Sequence Viewer

Length: 468 bp
ATGGGAAAGTCACTTCCTTCCTCGACCCGGCTCCAAAACTTGACCCGAATCATCTCCTCCGACAAGTTCTCGCGCCCCCCGAAACGCCCGACCCAAGTCCGGGTTTCGCCGCCGCAAACCGCGAAAACGGGTAGTATTCTCCGGGTCGACCCGGAGAAAGCCGGGCTGAAGATGGAGAGCTCCGAAGAGCAGAGACGGGTCCCGCTGGCCCGGATCGTATCGGACTGCGCCAAGCGGTGGTTTCAGGACACGCTCAAGGAGGCCAAGGGCGGCAACTCCGCAATGCAGGTCTTGGTGGGCCAGATGTATCATAGTGGCTATGGTGTTCAGAAAAACCCAGAAAAGGGACATGCTTGGATCAGTAGAGCTTCAAGAAGTCGAAGATCGGTTTGGAAAGTAAGCGAGAAGCAACCAGGTTACCACGCAAGTGATTCCGACTCGGATGAATTGGAAGAGGATGCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010608 GO:0010628 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0017091 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031325 GO:0031437 GO:0031439 GO:0031440 GO:0031442 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042382 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050684 GO:0050685 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051259 GO:0051262 GO:0051290 GO:0051291 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0110104 GO:1900363 GO:1900365 GO:1901360 GO:1901363 GO:1901532 GO:1901534 GO:1903311 GO:1903313 GO:1903706 GO:1903708 GO:1905456 GO:1905458 GO:1990120 GO:2000026 GO:2000736 GO:2000738 GO:2000973 GO:2000975
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
NUDIX_2

Protein Analysis

155

Amino Acids

17.35

Weight (kDa)

9.95

Isoelectric Point (pI)

70.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25550
fragaria_vesca FvH4_7g29390
malus_domestica MD01G1199900.v1.1 MD07G1267800.v1.1
prunus_persica Prupe.2G293500_v2.0.a1
pyrus_communis pycom07g24540
rosa_chinensis RchiOBHm_Chr1g0377171
rosa_laevigata RLG00000026539
rosa_multiflora Rmu_ssc0000155.1_g000015
rosa_roxburghii Rroxscaffold_4G00281410
rosa_rugosa Rorug01G0401800
rosa_samantha Rh1AG419200 Rh1BG378300 Rh1CG392300 Rh1DG409000
rosa_wichuraiana Rw1G036770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 277
AccB7I CCANNNNNTGG 1 cut(s) 237
AccI GTMKAC 1 cut(s) 147
AccII CGCG 2 cut(s) 73, 122
AciI CCGC 7 cut(s) 110, 113, 120, 203, 235, 270, 279
AclWI GGATC 2 cut(s) 221, 365
AcuI CTGAAG 1 cut(s) 188
AfiI CCNNNNNNNGG 6 cut(s) 27, 99, 100, 237, 343, 344
AgsI TTSAA 1 cut(s) 372
AjnI CCWGG 1 cut(s) 412
AjuI GAANNNNNNNTTGG 2 cut(s) 373, 405
AleI CACNNNNGTG 1 cut(s) 426
AluBI AGCT 2 cut(s) 180, 368
AluI AGCT 2 cut(s) 180, 368
Alw21I GWGCWC 1 cut(s) 182
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 2 cut(s) 221, 365
AoxI GGCC 3 cut(s) 207, 261, 298
AspLEI GCGC 2 cut(s) 75, 230
AspS9I GGNCC 3 cut(s) 199, 208, 298
AsuC2I CCSGG 6 cut(s) 28, 101, 143, 152, 163, 211
AvaII GGWCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 182
BccI CCATC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 414
BcnI CCSGG 6 cut(s) 28, 101, 143, 152, 163, 211
BcoDI GTCTC 1 cut(s) 187
BfuAI ACCTGC 1 cut(s) 277
BisI GCNGC 3 cut(s) 110, 113, 271
BlsI GCNGC 3 cut(s) 111, 114, 272
Bme1390I CCNGG 7 cut(s) 28, 101, 143, 152, 163, 211, 414
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 3 cut(s) 199, 208, 298
BmiI GGNNCC 3 cut(s) 32, 200, 201
BmrFI CCNGG 7 cut(s) 28, 101, 143, 152, 163, 211, 414
BmsI GCATC 1 cut(s) 448
BoxI GACNNNNGTC 1 cut(s) 95
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 6 cut(s) 28, 101, 143, 152, 163, 211
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 6 cut(s) 27, 99, 100, 237, 343, 344
Bse3DI GCAATG 1 cut(s) 288
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 2 cut(s) 448, 463
BseLI CCNNNNNNNGG 6 cut(s) 27, 99, 100, 237, 343, 344
BseMI GCAATG 1 cut(s) 288
BseRI GAGGAG 1 cut(s) 46
Bsh1236I CGCG 2 cut(s) 73, 122
BshFI GGCC 3 cut(s) 209, 263, 300
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 6 cut(s) 28, 100, 142, 152, 162, 211
BslFI GGGAC 2 cut(s) 185, 360
BslI CCNNNNNNNGG 6 cut(s) 27, 99, 100, 237, 343, 344
BsmAI GTCTC 1 cut(s) 187
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 2 cut(s) 185, 360
BsnI GGCC 3 cut(s) 209, 263, 300
Bsp1286I GDGCHC 1 cut(s) 182
Bsp143I GATC 3 cut(s) 213, 357, 383
BspACI CCGC 7 cut(s) 110, 113, 120, 203, 235, 270, 279
BspANI GGCC 3 cut(s) 209, 263, 300
BspFNI CGCG 2 cut(s) 73, 122
BspLI GGNNCC 3 cut(s) 32, 200, 201
BspMI ACCTGC 1 cut(s) 277
BspPI GGATC 2 cut(s) 221, 365
BspQI GCTCTTC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 288
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 3 cut(s) 213, 357, 383
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 414
Bst6I CTCTTC 2 cut(s) 180, 447
BstC8I GCNNGC 1 cut(s) 207
BstEII GGTNACC 1 cut(s) 416
BstF5I GGATG 2 cut(s) 448, 463
BstFNI CGCG 2 cut(s) 73, 122
BstHHI GCGC 2 cut(s) 75, 230
BstKTI GATC 3 cut(s) 216, 360, 386
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 3 cut(s) 213, 357, 383
BstNI CCWGG 1 cut(s) 414
BstNSI RCATGY 1 cut(s) 353
BstPAI GACNNNNGTC 1 cut(s) 95
BstPI GGTNACC 1 cut(s) 416
BstSCI CCNGG 7 cut(s) 26, 99, 141, 150, 161, 209, 412
BstUI CGCG 2 cut(s) 73, 122
BsuRI GGCC 3 cut(s) 209, 263, 300
BtsCI GGATG 2 cut(s) 448, 463
BveI ACCTGC 1 cut(s) 277
Cac8I GCNNGC 1 cut(s) 207
CfoI GCGC 2 cut(s) 75, 230
Cfr13I GGNCC 3 cut(s) 199, 208, 298
CsiI ACCWGGT 1 cut(s) 412
CviAII CATG 1 cut(s) 350
CviJI RGCY 9 cut(s) 31, 161, 166, 180, 209, 263, 300, 318, 368
CviKI_1 RGCY 9 cut(s) 31, 161, 166, 180, 209, 263, 300, 318, 368
DpnI GATC 3 cut(s) 215, 359, 385
DpnII GATC 3 cut(s) 213, 357, 383
Eam1104I CTCTTC 2 cut(s) 180, 447
EarI CTCTTC 2 cut(s) 180, 447
Ecl136II GAGCTC 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 199
Eco53kI GAGCTC 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 188
Eco91I GGTNACC 1 cut(s) 416
EcoICRI GAGCTC 1 cut(s) 180
EcoO109I RGGNCCY 1 cut(s) 199
EcoO65I GGTNACC 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 264
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 1 cut(s) 353
FaiI YATR 3 cut(s) 312, 321, 351
FaqI GGGAC 2 cut(s) 185, 360
FatI CATG 1 cut(s) 349
FauI CCCGC 1 cut(s) 210
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 3 cut(s) 110, 113, 271
FokI GGATG 1 cut(s) 455
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 3 cut(s) 110, 113, 271
GlaI GCGC 2 cut(s) 74, 229
GluI GCNGC 3 cut(s) 110, 113, 271
HaeIII GGCC 3 cut(s) 209, 263, 300
HapII CCGG 6 cut(s) 28, 100, 142, 152, 162, 211
HhaI GCGC 2 cut(s) 75, 230
Hin1II CATG 1 cut(s) 353
Hin6I GCGC 2 cut(s) 73, 228
HinP1I GCGC 2 cut(s) 73, 228
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 3 cut(s) 48, 431, 437
HpaII CCGG 6 cut(s) 28, 100, 142, 152, 162, 211
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 6 cut(s) 61, 184, 223, 330, 436, 442
Hpy188III TCNNGA 2 cut(s) 245, 372
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 286, 461
Hsp92II CATG 1 cut(s) 353
HspAI GCGC 2 cut(s) 73, 228
KflI GGGWCCC 1 cut(s) 199
Kzo9I GATC 3 cut(s) 213, 357, 383
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 2 cut(s) 36, 185
LweI GCATC 1 cut(s) 448
MabI ACCWGGT 1 cut(s) 412
MaeIII GTNAC 2 cut(s) 9, 416
MalI GATC 3 cut(s) 215, 359, 385
MboI GATC 3 cut(s) 213, 357, 383
MboII GAAGA 4 cut(s) 181, 197, 393, 464
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 1 cut(s) 446
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 2 cut(s) 84, 459
MnlI CCTC 4 cut(s) 31, 67, 253, 448
MslI CAYNNNNRTG 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 205
MspI CCGG 6 cut(s) 28, 100, 142, 152, 162, 211
MspR9I CCNGG 7 cut(s) 28, 101, 143, 152, 163, 211, 414
MvaI CCWGG 1 cut(s) 414
MvnI CGCG 2 cut(s) 73, 122
NciI CCSGG 6 cut(s) 28, 101, 143, 152, 163, 211
NdeII GATC 3 cut(s) 213, 357, 383
NlaIII CATG 1 cut(s) 353
NlaIV GGNNCC 3 cut(s) 32, 200, 201
NmuCI GTSAC 1 cut(s) 9
NspI RCATGY 1 cut(s) 353
OliI CACNNNNGTG 1 cut(s) 426
PciSI GCTCTTC 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PfeI GAWTC 2 cut(s) 48, 431
PflMI CCANNNNNTGG 1 cut(s) 237
PkrI GCNGC 3 cut(s) 111, 114, 272
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
PpuMI RGGWCCY 1 cut(s) 199
PshAI GACNNNNGTC 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 182
Psp5II RGGWCCY 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 412
PspEI GGTNACC 1 cut(s) 416
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 3 cut(s) 32, 200, 201
PspPI GGNCC 3 cut(s) 199, 208, 298
PspPPI RGGWCCY 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 426
SacI GAGCTC 1 cut(s) 182
SalI GTCGAC 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 180
SatI GCNGC 3 cut(s) 110, 113, 271
Sau3AI GATC 3 cut(s) 213, 357, 383
Sau96I GGNCC 3 cut(s) 199, 208, 298
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 7 cut(s) 28, 101, 143, 152, 163, 211, 414
SduI GDGCHC 1 cut(s) 182
SetI ASST 4 cut(s) 182, 291, 370, 418
SexAI ACCWGGT 1 cut(s) 412
SfaNI GCATC 1 cut(s) 448
SinI GGWCC 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 1 cut(s) 446
SsiI CCGC 7 cut(s) 110, 113, 120, 203, 235, 270, 279
SstI GAGCTC 1 cut(s) 182
StyD4I CCNGG 7 cut(s) 26, 99, 141, 150, 161, 209, 412
StyI CCWWGG 1 cut(s) 264
TaqI TCGA 3 cut(s) 23, 147, 379
TasI AATT 1 cut(s) 446
TauI GCSGC 3 cut(s) 112, 115, 273
TfiI GAWTC 2 cut(s) 48, 431
TseFI GTSAC 1 cut(s) 9
Tsp45I GTSAC 1 cut(s) 9
TspDTI ATGAA 1 cut(s) 459
Van91I CCANNNNNTGG 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 199
XceI RCATGY 1 cut(s) 353
XmiI GTMKAC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.