Cleavage and polyadenylation specificity factor subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G25550 |
| fragaria_vesca | FvH4_7g29390 |
| malus_domestica | MD01G1199900.v1.1 MD07G1267800.v1.1 |
| prunus_persica | Prupe.2G293500_v2.0.a1 |
| pyrus_communis | pycom07g24540 |
| rosa_chinensis | RchiOBHm_Chr1g0377171 |
| rosa_laevigata | RLG00000026539 |
| rosa_multiflora | Rmu_ssc0000155.1_g000015 |
| rosa_roxburghii | Rroxscaffold_4G00281410 |
| rosa_rugosa | Rorug01G0401800 |
| rosa_samantha | Rh1AG419200 Rh1BG378300 Rh1CG392300 Rh1DG409000 |
| rosa_wichuraiana | Rw1G036770 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 319 |
| AatII | GACGTC | 1 cut(s) | 11 |
| Acc36I | ACCTGC | 1 cut(s) | 319 |
| AciI | CCGC | 1 cut(s) | 14 |
| AcyI | GRCGYC | 1 cut(s) | 8 |
| AfaI | GTAC | 3 cut(s) | 29, 168, 464 |
| AflIII | ACRYGT | 3 cut(s) | 24, 45, 213 |
| AgsI | TTSAA | 3 cut(s) | 374, 512, 586 |
| AjnI | CCWGG | 2 cut(s) | 229, 247 |
| AluBI | AGCT | 5 cut(s) | 42, 283, 295, 433, 568 |
| AluI | AGCT | 5 cut(s) | 42, 283, 295, 433, 568 |
| AoxI | GGCC | 1 cut(s) | 362 |
| ApeKI | GCWGC | 1 cut(s) | 565 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 215 |
| AspLEI | GCGC | 1 cut(s) | 302 |
| AspS9I | GGNCC | 3 cut(s) | 54, 141, 539 |
| AsuHPI | GGTGA | 3 cut(s) | 16, 31, 300 |
| AvaII | GGWCC | 3 cut(s) | 54, 141, 539 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 72, 105 |
| BanII | GRGCYC | 1 cut(s) | 66 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 144, 176 |
| BbvI | GCAGC | 1 cut(s) | 577 |
| BccI | CCATC | 1 cut(s) | 64 |
| BciT130I | CCWGG | 2 cut(s) | 231, 249 |
| BciVI | GTATCC | 2 cut(s) | 73, 396 |
| BclI | TGATCA | 1 cut(s) | 591 |
| BfaI | CTAG | 1 cut(s) | 288 |
| BfmI | CTRYAG | 1 cut(s) | 200 |
| BfoI | RGCGCY | 1 cut(s) | 303 |
| BfuAI | ACCTGC | 1 cut(s) | 319 |
| BfuI | GTATCC | 2 cut(s) | 73, 396 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 328 |
| BisI | GCNGC | 1 cut(s) | 566 |
| BlsI | GCNGC | 1 cut(s) | 567 |
| BmcAI | AGTACT | 1 cut(s) | 464 |
| Bme1390I | CCNGG | 2 cut(s) | 231, 249 |
| Bme18I | GGWCC | 3 cut(s) | 54, 141, 539 |
| BmgT120I | GGNCC | 3 cut(s) | 54, 141, 539 |
| BmiI | GGNNCC | 1 cut(s) | 55 |
| BmrFI | CCNGG | 2 cut(s) | 231, 249 |
| BoxI | GACNNNNGTC | 1 cut(s) | 146 |
| BpuEI | CTTGAG | 1 cut(s) | 227 |
| BsaAI | YACGTR | 1 cut(s) | 27 |
| BsaHI | GRCGYC | 1 cut(s) | 8 |
| BsaJI | CCNNGG | 1 cut(s) | 417 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 330, 360 |
| Bse1I | ACTGG | 2 cut(s) | 168, 332 |
| BseBI | CCWGG | 2 cut(s) | 231, 249 |
| BseDI | CCNNGG | 1 cut(s) | 417 |
| BseGI | GGATG | 1 cut(s) | 181 |
| BseMII | CTCAG | 1 cut(s) | 444 |
| BseNI | ACTGG | 2 cut(s) | 168, 332 |
| BseRI | GAGGAG | 1 cut(s) | 390 |
| BseXI | GCAGC | 1 cut(s) | 577 |
| BseYI | CCCAGC | 1 cut(s) | 561 |
| BshFI | GGCC | 1 cut(s) | 364 |
| BslFI | GGGAC | 2 cut(s) | 67, 458 |
| BsmFI | GGGAC | 2 cut(s) | 67, 458 |
| BsnI | GGCC | 1 cut(s) | 364 |
| Bsp1286I | GDGCHC | 1 cut(s) | 66 |
| Bsp143I | GATC | 2 cut(s) | 94, 591 |
| BspACI | CCGC | 1 cut(s) | 14 |
| BspANI | GGCC | 1 cut(s) | 364 |
| BspCNI | CTCAG | 1 cut(s) | 445 |
| BspHI | TCATGA | 1 cut(s) | 599 |
| BspLI | GGNNCC | 1 cut(s) | 55 |
| BspMAI | CTGCAG | 1 cut(s) | 204 |
| BspMI | ACCTGC | 1 cut(s) | 319 |
| BsrI | ACTGG | 2 cut(s) | 168, 332 |
| BssECI | CCNNGG | 1 cut(s) | 417 |
| BssMI | GATC | 2 cut(s) | 94, 591 |
| BssNI | GRCGYC | 1 cut(s) | 8 |
| BssT1I | CCWWGG | 1 cut(s) | 417 |
| Bst2UI | CCWGG | 2 cut(s) | 231, 249 |
| Bst4CI | ACNGT | 1 cut(s) | 36 |
| BstACI | GRCGYC | 1 cut(s) | 8 |
| BstBAI | YACGTR | 1 cut(s) | 27 |
| BstC8I | GCNNGC | 1 cut(s) | 293 |
| BstDEI | CTNAG | 1 cut(s) | 453 |
| BstF5I | GGATG | 1 cut(s) | 181 |
| BstH2I | RGCGCY | 1 cut(s) | 303 |
| BstHHI | GCGC | 1 cut(s) | 302 |
| BstKTI | GATC | 2 cut(s) | 97, 594 |
| BstMBI | GATC | 2 cut(s) | 94, 591 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 297, 328 |
| BstNI | CCWGG | 2 cut(s) | 231, 249 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 146 |
| BstSCI | CCNGG | 2 cut(s) | 229, 247 |
| BstSFI | CTRYAG | 1 cut(s) | 200 |
| BstV1I | GCAGC | 1 cut(s) | 577 |
| BsuI | GTATCC | 2 cut(s) | 73, 396 |
| BsuRI | GGCC | 1 cut(s) | 364 |
| BtsCI | GGATG | 1 cut(s) | 181 |
| BtsIMutI | CAGTG | 1 cut(s) | 32 |
| BveI | ACCTGC | 1 cut(s) | 319 |
| Cac8I | GCNNGC | 1 cut(s) | 293 |
| CciI | TCATGA | 1 cut(s) | 599 |
| CfoI | GCGC | 1 cut(s) | 302 |
| Cfr13I | GGNCC | 3 cut(s) | 54, 141, 539 |
| CseI | GACGC | 1 cut(s) | 136 |
| Csp6I | GTAC | 3 cut(s) | 28, 167, 463 |
| CviAII | CATG | 2 cut(s) | 589, 600 |
| CviQI | GTAC | 3 cut(s) | 28, 167, 463 |
| DdeI | CTNAG | 1 cut(s) | 453 |
| DpnI | GATC | 2 cut(s) | 96, 593 |
| DpnII | GATC | 2 cut(s) | 94, 591 |
| Eco130I | CCWWGG | 1 cut(s) | 417 |
| Eco24I | GRGCYC | 1 cut(s) | 66 |
| Eco47I | GGWCC | 3 cut(s) | 54, 141, 539 |
| EcoRII | CCWGG | 2 cut(s) | 229, 247 |
| EcoT14I | CCWWGG | 1 cut(s) | 417 |
| EcoT38I | GRGCYC | 1 cut(s) | 66 |
| ErhI | CCWWGG | 1 cut(s) | 417 |
| FaeI | CATG | 2 cut(s) | 592, 603 |
| FaqI | GGGAC | 2 cut(s) | 67, 458 |
| FatI | CATG | 2 cut(s) | 588, 599 |
| FbaI | TGATCA | 1 cut(s) | 591 |
| Fnu4HI | GCNGC | 1 cut(s) | 566 |
| FokI | GGATG | 1 cut(s) | 168 |
| FriOI | GRGCYC | 1 cut(s) | 66 |
| Fsp4HI | GCNGC | 1 cut(s) | 566 |
| FspBI | CTAG | 1 cut(s) | 288 |
| GlaI | GCGC | 1 cut(s) | 301 |
| GluI | GCNGC | 1 cut(s) | 566 |
| GsaI | CCCAGC | 1 cut(s) | 565 |
| HaeII | RGCGCY | 1 cut(s) | 303 |
| HaeIII | GGCC | 1 cut(s) | 364 |
| HgaI | GACGC | 1 cut(s) | 136 |
| HhaI | GCGC | 1 cut(s) | 302 |
| Hin1I | GRCGYC | 1 cut(s) | 8 |
| Hin1II | CATG | 2 cut(s) | 592, 603 |
| Hin6I | GCGC | 1 cut(s) | 300 |
| HinP1I | GCGC | 1 cut(s) | 300 |
| HindIII | AAGCTT | 2 cut(s) | 293, 431 |
| HinfI | GANTC | 2 cut(s) | 240, 576 |
| HphI | GGTGA | 3 cut(s) | 16, 31, 300 |
| Hpy166II | GTNNAC | 3 cut(s) | 22, 236, 445 |
| Hpy188I | TCNGA | 2 cut(s) | 454, 531 |
| Hpy188III | TCNNGA | 3 cut(s) | 52, 573, 600 |
| Hpy8I | GTNNAC | 3 cut(s) | 22, 236, 445 |
| Hpy99I | CGWCG | 3 cut(s) | 13, 92, 152 |
| HpyAV | CCTTC | 1 cut(s) | 70 |
| HpyCH4III | ACNGT | 1 cut(s) | 36 |
| HpyCH4IV | ACGT | 4 cut(s) | 8, 26, 47, 215 |
| HpyCH4V | TGCA | 4 cut(s) | 202, 222, 470, 497 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 297, 328 |
| HpyF3I | CTNAG | 1 cut(s) | 453 |
| HpySE526I | ACGT | 4 cut(s) | 8, 26, 47, 215 |
| Hsp92I | GRCGYC | 1 cut(s) | 8 |
| Hsp92II | CATG | 2 cut(s) | 592, 603 |
| HspAI | GCGC | 1 cut(s) | 300 |
| Ksp22I | TGATCA | 1 cut(s) | 591 |
| Kzo9I | GATC | 2 cut(s) | 94, 591 |
| Lsp1109I | GCAGC | 1 cut(s) | 577 |
| MaeI | CTAG | 1 cut(s) | 288 |
| MaeII | ACGT | 4 cut(s) | 8, 26, 47, 215 |
| MaeIII | GTNAC | 1 cut(s) | 4 |
| MalI | GATC | 2 cut(s) | 96, 593 |
| MboI | GATC | 2 cut(s) | 94, 591 |
| MhlI | GDGCHC | 1 cut(s) | 66 |
| MluCI | AATT | 4 cut(s) | 261, 304, 555, 581 |
| MlyI | GAGTC | 1 cut(s) | 234 |
| MnlI | CCTC | 8 cut(s) | 94, 110, 124, 132, 259, 354, 408, 411 |
| MroXI | GAANNNNTTC | 1 cut(s) | 215 |
| MspR9I | CCNGG | 2 cut(s) | 231, 249 |
| MvaI | CCWGG | 2 cut(s) | 231, 249 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 297, 328 |
| NdeII | GATC | 2 cut(s) | 94, 591 |
| NlaIII | CATG | 2 cut(s) | 592, 603 |
| NlaIV | GGNNCC | 1 cut(s) | 55 |
| NmuCI | GTSAC | 1 cut(s) | 4 |
| PagI | TCATGA | 1 cut(s) | 599 |
| PaqCI | CACCTGC | 1 cut(s) | 319 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 44, 103 |
| PdmI | GAANNNNTTC | 1 cut(s) | 215 |
| PfeI | GAWTC | 1 cut(s) | 576 |
| PkrI | GCNGC | 1 cut(s) | 567 |
| PleI | GAGTC | 1 cut(s) | 234 |
| PpsI | GAGTC | 1 cut(s) | 234 |
| Ppu21I | YACGTR | 1 cut(s) | 27 |
| PshAI | GACNNNNGTC | 1 cut(s) | 146 |
| Psp6I | CCWGG | 2 cut(s) | 229, 247 |
| PspFI | CCCAGC | 1 cut(s) | 561 |
| PspGI | CCWGG | 2 cut(s) | 229, 247 |
| PspN4I | GGNNCC | 1 cut(s) | 55 |
| PspPI | GGNCC | 3 cut(s) | 54, 141, 539 |
| PstI | CTGCAG | 1 cut(s) | 204 |
| RsaI | GTAC | 3 cut(s) | 29, 168, 464 |
| RsaNI | GTAC | 3 cut(s) | 28, 167, 463 |
| SatI | GCNGC | 1 cut(s) | 566 |
| Sau3AI | GATC | 2 cut(s) | 94, 591 |
| Sau96I | GGNCC | 3 cut(s) | 54, 141, 539 |
| ScaI | AGTACT | 1 cut(s) | 464 |
| SchI | GAGTC | 1 cut(s) | 234 |
| ScrFI | CCNGG | 2 cut(s) | 231, 249 |
| SduI | GDGCHC | 1 cut(s) | 66 |
| SfcI | CTRYAG | 1 cut(s) | 200 |
| SinI | GGWCC | 3 cut(s) | 54, 141, 539 |
| SmlI | CTYRAG | 1 cut(s) | 242 |
| SmoI | CTYRAG | 1 cut(s) | 242 |
| Sse9I | AATT | 4 cut(s) | 261, 304, 555, 581 |
| SsiI | CCGC | 1 cut(s) | 14 |
| SspMI | CTAG | 1 cut(s) | 288 |
| StyD4I | CCNGG | 2 cut(s) | 229, 247 |
| StyI | CCWWGG | 1 cut(s) | 417 |
| TaaI | ACNGT | 1 cut(s) | 36 |
| TaiI | ACGT | 4 cut(s) | 11, 29, 50, 218 |
| TaqI | TCGA | 4 cut(s) | 38, 106, 150, 572 |
| TasI | AATT | 4 cut(s) | 261, 304, 555, 581 |
| TatI | WGTACW | 1 cut(s) | 462 |
| TfiI | GAWTC | 1 cut(s) | 576 |
| TscAI | CASTG | 1 cut(s) | 39 |
| TseFI | GTSAC | 1 cut(s) | 4 |
| TseI | GCWGC | 1 cut(s) | 565 |
| Tsp45I | GTSAC | 1 cut(s) | 4 |
| TspDTI | ATGAA | 4 cut(s) | 125, 140, 273, 588 |
| TspGWI | ACGGA | 1 cut(s) | 76 |
| TspRI | CASTG | 1 cut(s) | 39 |
| VpaK11BI | GGWCC | 3 cut(s) | 54, 141, 539 |
| XmnI | GAANNNNTTC | 1 cut(s) | 215 |
| XspI | CTAG | 1 cut(s) | 288 |
| ZraI | GACGTC | 1 cut(s) | 9 |
| ZrmI | AGTACT | 1 cut(s) | 464 |