Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000155.1

Orthogroup ID

OG0015102

Physical Location & Seq

Genomic Coordinates Reverse (-)

52069 .. 54173

Gene Structure 2105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000155.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggtgacgtcggcggtggtcaacacctatccactgtccagctacaccttcgggaccaaagagcccaagatggagaaggacacctccgtcgccgatcgcctcgctcgcatgaaagtcaactatatgaaagaggggatgaggacaagcgtcgaagctattttactggtacaggaacataatcatccccacatactgcttctgcagattggaaacacgttctgcaaacttcctggtggacgactgaagcctggggagaatgagattgaggggctgaaaagaaagctcaccagcaaacttggtgctaattcaccaaaccttgtccctgattggcagataggagaatgcgtcgctatctggtggaggccaaactttgaaaccataatgtatccatattgccctcctcacataacaaaaccaaaggagtgcaagaagcttttccttgttcacttatctgagagggagtactttgctgtgccaaagaacctaaaactccttgctgttccgttgtttgagctctatgacaatgttcagagatatgggcctgttatatctacaattcctcagcagctttccagattccaattcaacatgatcagttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010608 GO:0010628 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0017091 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031325 GO:0031437 GO:0031439 GO:0031440 GO:0031442 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042382 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050684 GO:0050685 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051259 GO:0051262 GO:0051290 GO:0051291 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0110104 GO:1900363 GO:1900365 GO:1901360 GO:1901363 GO:1901532 GO:1901534 GO:1903311 GO:1903313 GO:1903706 GO:1903708 GO:1905456 GO:1905458 GO:1990120 GO:2000026 GO:2000736 GO:2000738 GO:2000973 GO:2000975

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

NUDIX_2

Protein Analysis

200

Amino Acids

22.92

Weight (kDa)

9.23

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25550
fragaria_vesca	FvH4_7g29390
malus_domestica	MD01G1199900.v1.1 MD07G1267800.v1.1
prunus_persica	Prupe.2G293500_v2.0.a1
pyrus_communis	pycom07g24540
rosa_chinensis	RchiOBHm_Chr1g0377171
rosa_laevigata	RLG00000026539
rosa_multiflora	Rmu_ssc0000155.1_g000015
rosa_roxburghii	Rroxscaffold_4G00281410
rosa_rugosa	Rorug01G0401800
rosa_samantha	Rh1AG419200 Rh1BG378300 Rh1CG392300 Rh1DG409000
rosa_wichuraiana	Rw1G036770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AatII	GACGTC	1 cut(s)	11
AciI	CCGC	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	263
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	2 cut(s)	168, 464
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	2 cut(s)	374, 586
AjnI	CCWGG	2 cut(s)	229, 247
AluBI	AGCT	6 cut(s)	42, 155, 283, 433, 514, 568
AluI	AGCT	6 cut(s)	42, 155, 283, 433, 514, 568
Alw21I	GWGCWC	1 cut(s)	516
AoxI	GGCC	2 cut(s)	362, 539
ApeKI	GCWGC	1 cut(s)	565
Asp700I	GAANNNNTTC	1 cut(s)	434
AspS9I	GGNCC	2 cut(s)	54, 539
AsuHPI	GGTGA	3 cut(s)	16, 277, 300
AvaII	GGWCC	1 cut(s)	54
BanII	GRGCYC	2 cut(s)	66, 516
BarI	GAAGNNNNNNTAC	2 cut(s)	144, 176
Bbv12I	GWGCWC	1 cut(s)	516
BbvCI	CCTCAGC	1 cut(s)	561
BbvI	GCAGC	1 cut(s)	577
BccI	CCATC	1 cut(s)	64
BciT130I	CCWGG	2 cut(s)	231, 249
BciVI	GTATCC	1 cut(s)	396
BclI	TGATCA	1 cut(s)	591
BfmI	CTRYAG	1 cut(s)	200
BfuI	GTATCC	1 cut(s)	396
BisI	GCNGC	1 cut(s)	566
BlsI	GCNGC	1 cut(s)	567
BmcAI	AGTACT	1 cut(s)	464
Bme1390I	CCNGG	2 cut(s)	231, 249
Bme18I	GGWCC	1 cut(s)	54
BmgT120I	GGNCC	2 cut(s)	54, 539
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	231, 249
BoxI	GACNNNNGTC	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bse1I	ACTGG	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	231, 249
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	2 cut(s)	141, 181
BseMII	CTCAG	2 cut(s)	444, 575
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	390
BseXI	GCAGC	1 cut(s)	577
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	2 cut(s)	364, 541
BsiEI	CGRYCG	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	516
BslFI	GGGAC	2 cut(s)	67, 305
BsmFI	GGGAC	2 cut(s)	67, 305
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	364, 541
Bsp1286I	GDGCHC	2 cut(s)	66, 516
Bsp143I	GATC	2 cut(s)	94, 591
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	2 cut(s)	364, 541
BspCNI	CTCAG	2 cut(s)	445, 574
BspHI	TCATGA	1 cut(s)	599
BspLI	GGNNCC	1 cut(s)	55
BspMAI	CTGCAG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	2 cut(s)	94, 591
BssNI	GRCGYC	1 cut(s)	8
Bst2UI	CCWGG	2 cut(s)	231, 249
Bst4CI	ACNGT	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	2 cut(s)	453, 561
BstF5I	GGATG	2 cut(s)	141, 181
BstKTI	GATC	2 cut(s)	97, 594
BstMBI	GATC	2 cut(s)	94, 591
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNI	CCWGG	2 cut(s)	231, 249
BstPAI	GACNNNNGTC	1 cut(s)	146
BstSCI	CCNGG	2 cut(s)	229, 247
BstSFI	CTRYAG	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	577
BsuI	GTATCC	1 cut(s)	396
BsuRI	GGCC	2 cut(s)	364, 541
BtsCI	GGATG	2 cut(s)	141, 181
BtsIMutI	CAGTG	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	106
CciI	TCATGA	1 cut(s)	599
Cfr13I	GGNCC	2 cut(s)	54, 539
CseI	GACGC	2 cut(s)	136, 334
Csp6I	GTAC	2 cut(s)	167, 463
CviAII	CATG	3 cut(s)	109, 589, 600
CviQI	GTAC	2 cut(s)	167, 463
DdeI	CTNAG	2 cut(s)	453, 561
DpnI	GATC	2 cut(s)	96, 593
DpnII	GATC	2 cut(s)	94, 591
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
Ecl136II	GAGCTC	1 cut(s)	514
Eco24I	GRGCYC	2 cut(s)	66, 516
Eco47I	GGWCC	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	514
Eco57I	CTGAAG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	514
EcoRII	CCWGG	2 cut(s)	229, 247
EcoT38I	GRGCYC	2 cut(s)	66, 516
FaeI	CATG	3 cut(s)	112, 592, 603
FaqI	GGGAC	2 cut(s)	67, 305
FatI	CATG	3 cut(s)	108, 588, 599
FbaI	TGATCA	1 cut(s)	591
Fnu4HI	GCNGC	1 cut(s)	566
FokI	GGATG	2 cut(s)	148, 168
FriOI	GRGCYC	2 cut(s)	66, 516
Fsp4HI	GCNGC	1 cut(s)	566
GluI	GCNGC	1 cut(s)	566
HaeIII	GGCC	2 cut(s)	364, 541
HgaI	GACGC	2 cut(s)	136, 334
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	3 cut(s)	112, 592, 603
HincII	GTYRAC	2 cut(s)	22, 118
HindII	GTYRAC	2 cut(s)	22, 118
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	1 cut(s)	576
HphI	GGTGA	3 cut(s)	16, 277, 300
Hpy166II	GTNNAC	4 cut(s)	22, 118, 236, 445
Hpy188I	TCNGA	2 cut(s)	454, 531
Hpy188III	TCNNGA	3 cut(s)	52, 573, 600
Hpy8I	GTNNAC	4 cut(s)	22, 118, 236, 445
Hpy99I	CGWCG	4 cut(s)	13, 92, 152, 350
HpyAV	CCTTC	2 cut(s)	58, 70
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	2 cut(s)	8, 215
HpyCH4V	TGCA	3 cut(s)	202, 222, 426
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	2 cut(s)	453, 561
HpySE526I	ACGT	2 cut(s)	8, 215
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	3 cut(s)	112, 592, 603
Ksp22I	TGATCA	1 cut(s)	591
Kzo9I	GATC	2 cut(s)	94, 591
Lsp1109I	GCAGC	1 cut(s)	577
MaeII	ACGT	2 cut(s)	8, 215
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	2 cut(s)	96, 593
MboI	GATC	2 cut(s)	94, 591
MhlI	GDGCHC	2 cut(s)	66, 516
MluCI	AATT	3 cut(s)	304, 555, 581
MroXI	GAANNNNTTC	1 cut(s)	434
MspR9I	CCNGG	2 cut(s)	231, 249
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	2 cut(s)	231, 249
MwoI	GCNNNNNNNGC	1 cut(s)	105
NdeII	GATC	2 cut(s)	94, 591
NlaIII	CATG	3 cut(s)	112, 592, 603
NlaIV	GGNNCC	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	4
PagI	TCATGA	1 cut(s)	599
PctI	GAATGC	1 cut(s)	347
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	1 cut(s)	576
PkrI	GCNGC	1 cut(s)	567
Ple19I	CGATCG	1 cut(s)	97
PshAI	GACNNNNGTC	1 cut(s)	146
Psp124BI	GAGCTC	1 cut(s)	516
Psp6I	CCWGG	2 cut(s)	229, 247
PspGI	CCWGG	2 cut(s)	229, 247
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	2 cut(s)	54, 539
PstI	CTGCAG	1 cut(s)	204
PvuI	CGATCG	1 cut(s)	97
RsaI	GTAC	2 cut(s)	168, 464
RsaNI	GTAC	2 cut(s)	167, 463
SacI	GAGCTC	1 cut(s)	516
SatI	GCNGC	1 cut(s)	566
Sau3AI	GATC	2 cut(s)	94, 591
Sau96I	GGNCC	2 cut(s)	54, 539
ScaI	AGTACT	1 cut(s)	464
ScrFI	CCNGG	2 cut(s)	231, 249
SduI	GDGCHC	2 cut(s)	66, 516
SfcI	CTRYAG	1 cut(s)	200
SinI	GGWCC	1 cut(s)	54
Sse9I	AATT	3 cut(s)	304, 555, 581
SsiI	CCGC	1 cut(s)	14
SstI	GAGCTC	1 cut(s)	516
StyD4I	CCNGG	2 cut(s)	229, 247
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	2 cut(s)	11, 218
TaqI	TCGA	1 cut(s)	150
TasI	AATT	3 cut(s)	304, 555, 581
TatI	WGTACW	1 cut(s)	462
TfiI	GAWTC	1 cut(s)	576
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	565
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	3 cut(s)	125, 140, 588
TspGWI	ACGGA	2 cut(s)	76, 492
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	434
ZraI	GACGTC	1 cut(s)	9
ZrmI	AGTACT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.