RLG00000026539

Cleavage and polyadenylation specificity factor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0015102
Physical Location & Seq
Reverse (-)
3688446 .. 3690591
2146 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026539

Sequence Viewer

Length: 603 bp
ATGGTGACGTCGGCGGTGGTCAACACCTATCCACTATCCAGCTACACCTTCGGGACCAAAGAGCCCAAGATGGAGAAGGACACCTCCGTCGCCGATCGCCTCGCTCGCATGAAAGTCAACTATATGAAAGAGGGGATGAGGACAAGCGTGGAAGCTATTTTACTGGTACAGGAACATAATCATCCCCACATACTGCTTCTGCAGATTGGAAACACGTTCTGCAAACTTCCTGGTGGACGGCTGAAGCCAGGAGAGAATGAGATTGAGGGGCTGAAAAGAAAGCTCACCAGCAAACTTGGTGCTAATTCAGCAAACCTTGTCCCTGATTGGCAGATAGGAGAATGCGTCGCTATCTGGTGGAGGCCAAACTTTGAAACCATAATGTATCCATATTGCCCTCCTCACATAACAAAACCAAAGGAGTGCAAGAAGCTTTTCCTTGTTCACTTATCTGAGAGGGAGTACTTTGCTGTGCCAAAGAACCTAAAACTCCTTGCTGTTCCTTTGTTTGAACTCTATGACAATGTTCAGAGATACGGGCCTGTTATATCTACAATTCCACAGCAGCTTTCCAGATTCCAATTCAACATGATCAGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010608 GO:0010628 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0017091 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031325 GO:0031437 GO:0031439 GO:0031440 GO:0031442 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042382 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050684 GO:0050685 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051259 GO:0051262 GO:0051290 GO:0051291 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0110104 GO:1900363 GO:1900365 GO:1901360 GO:1901363 GO:1901532 GO:1901534 GO:1903311 GO:1903313 GO:1903706 GO:1903708 GO:1905456 GO:1905458 GO:1990120 GO:2000026 GO:2000736 GO:2000738 GO:2000973 GO:2000975
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
NUDIX_2

Protein Analysis

201

Amino Acids

22.9

Weight (kDa)

9.23

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX_2 PF13869 6 - 193 7.1e-86 Nucleotide hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25550
fragaria_vesca FvH4_7g29390
malus_domestica MD01G1199900.v1.1 MD07G1267800.v1.1
prunus_persica Prupe.2G293500_v2.0.a1
pyrus_communis pycom07g24540
rosa_chinensis RchiOBHm_Chr1g0377171
rosa_laevigata RLG00000026539
rosa_multiflora Rmu_ssc0000155.1_g000015
rosa_roxburghii Rroxscaffold_4G00281410
rosa_rugosa Rorug01G0401800
rosa_samantha Rh1AG419200 Rh1BG378300 Rh1CG392300 Rh1DG409000
rosa_wichuraiana Rw1G036770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
AatII GACGTC 1 cut(s) 11
AciI CCGC 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 2 cut(s) 168, 464
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 3 cut(s) 374, 512, 586
AjnI CCWGG 2 cut(s) 229, 247
AluBI AGCT 5 cut(s) 42, 155, 283, 433, 568
AluI AGCT 5 cut(s) 42, 155, 283, 433, 568
AoxI GGCC 2 cut(s) 362, 539
ApeKI GCWGC 1 cut(s) 565
Asp700I GAANNNNTTC 1 cut(s) 434
AspS9I GGNCC 2 cut(s) 54, 539
AsuHPI GGTGA 2 cut(s) 16, 277
AvaII GGWCC 1 cut(s) 54
BanII GRGCYC 1 cut(s) 66
BarI GAAGNNNNNNTAC 2 cut(s) 144, 176
BbvI GCAGC 1 cut(s) 577
BccI CCATC 1 cut(s) 64
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 2 cut(s) 231, 249
BciVI GTATCC 1 cut(s) 396
BclI TGATCA 1 cut(s) 591
BfmI CTRYAG 1 cut(s) 200
BfuI GTATCC 1 cut(s) 396
BisI GCNGC 1 cut(s) 566
BlsI GCNGC 1 cut(s) 567
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 2 cut(s) 231, 249
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 2 cut(s) 54, 539
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 2 cut(s) 231, 249
BsaHI GRCGYC 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bse1I ACTGG 1 cut(s) 168
BseBI CCWGG 2 cut(s) 231, 249
BseGI GGATG 2 cut(s) 141, 181
BseMII CTCAG 1 cut(s) 444
BseNI ACTGG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 390
BseXI GCAGC 1 cut(s) 577
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 2 cut(s) 364, 541
BsiEI CGRYCG 1 cut(s) 97
BslFI GGGAC 2 cut(s) 67, 305
BsmFI GGGAC 2 cut(s) 67, 305
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 2 cut(s) 364, 541
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 2 cut(s) 94, 591
BspACI CCGC 1 cut(s) 14
BspANI GGCC 2 cut(s) 364, 541
BspCNI CTCAG 1 cut(s) 445
BspHI TCATGA 1 cut(s) 599
BspLI GGNNCC 1 cut(s) 55
BspMAI CTGCAG 1 cut(s) 204
BsrI ACTGG 1 cut(s) 168
BssMI GATC 2 cut(s) 94, 591
BssNI GRCGYC 1 cut(s) 8
Bst2UI CCWGG 2 cut(s) 231, 249
BstACI GRCGYC 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 453
BstF5I GGATG 2 cut(s) 141, 181
BstKTI GATC 2 cut(s) 97, 594
BstMBI GATC 2 cut(s) 94, 591
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 2 cut(s) 105, 308
BstNI CCWGG 2 cut(s) 231, 249
BstSCI CCNGG 2 cut(s) 229, 247
BstSFI CTRYAG 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 577
BsuI GTATCC 1 cut(s) 396
BsuRI GGCC 2 cut(s) 364, 541
BtsCI GGATG 2 cut(s) 141, 181
Cac8I GCNNGC 1 cut(s) 106
CciI TCATGA 1 cut(s) 599
Cfr13I GGNCC 2 cut(s) 54, 539
CseI GACGC 1 cut(s) 334
Csp6I GTAC 2 cut(s) 167, 463
CviAII CATG 3 cut(s) 109, 589, 600
CviQI GTAC 2 cut(s) 167, 463
DdeI CTNAG 1 cut(s) 453
DpnI GATC 2 cut(s) 96, 593
DpnII GATC 2 cut(s) 94, 591
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 263
EcoRII CCWGG 2 cut(s) 229, 247
EcoT38I GRGCYC 1 cut(s) 66
FaeI CATG 3 cut(s) 112, 592, 603
FaqI GGGAC 2 cut(s) 67, 305
FatI CATG 3 cut(s) 108, 588, 599
FbaI TGATCA 1 cut(s) 591
Fnu4HI GCNGC 1 cut(s) 566
FokI GGATG 2 cut(s) 148, 168
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 566
GluI GCNGC 1 cut(s) 566
HaeIII GGCC 2 cut(s) 364, 541
HgaI GACGC 1 cut(s) 334
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 3 cut(s) 112, 592, 603
HincII GTYRAC 2 cut(s) 22, 118
HindII GTYRAC 2 cut(s) 22, 118
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 1 cut(s) 576
HphI GGTGA 2 cut(s) 16, 277
Hpy166II GTNNAC 4 cut(s) 22, 118, 236, 445
Hpy188I TCNGA 2 cut(s) 454, 531
Hpy188III TCNNGA 3 cut(s) 52, 573, 600
Hpy8I GTNNAC 4 cut(s) 22, 118, 236, 445
Hpy99I CGWCG 3 cut(s) 13, 92, 350
HpyAV CCTTC 2 cut(s) 58, 70
HpyCH4IV ACGT 2 cut(s) 8, 215
HpyCH4V TGCA 3 cut(s) 202, 222, 426
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 308
HpyF3I CTNAG 1 cut(s) 453
HpySE526I ACGT 2 cut(s) 8, 215
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 3 cut(s) 112, 592, 603
Ksp22I TGATCA 1 cut(s) 591
Kzo9I GATC 2 cut(s) 94, 591
Lsp1109I GCAGC 1 cut(s) 577
MaeII ACGT 2 cut(s) 8, 215
MaeIII GTNAC 1 cut(s) 4
MalI GATC 2 cut(s) 96, 593
MboI GATC 2 cut(s) 94, 591
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 3 cut(s) 304, 555, 581
MnlI CCTC 9 cut(s) 94, 110, 124, 132, 259, 354, 408, 411, 450
MroXI GAANNNNTTC 1 cut(s) 434
MspR9I CCNGG 2 cut(s) 231, 249
Mva1269I GAATGC 1 cut(s) 347
MvaI CCWGG 2 cut(s) 231, 249
MwoI GCNNNNNNNGC 2 cut(s) 105, 308
NdeII GATC 2 cut(s) 94, 591
NlaIII CATG 3 cut(s) 112, 592, 603
NlaIV GGNNCC 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 4
PagI TCATGA 1 cut(s) 599
PctI GAATGC 1 cut(s) 347
PdmI GAANNNNTTC 1 cut(s) 434
PfeI GAWTC 1 cut(s) 576
PkrI GCNGC 1 cut(s) 567
Ple19I CGATCG 1 cut(s) 97
Psp6I CCWGG 2 cut(s) 229, 247
PspGI CCWGG 2 cut(s) 229, 247
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 2 cut(s) 54, 539
PstI CTGCAG 1 cut(s) 204
PvuI CGATCG 1 cut(s) 97
RsaI GTAC 2 cut(s) 168, 464
RsaNI GTAC 2 cut(s) 167, 463
SatI GCNGC 1 cut(s) 566
Sau3AI GATC 2 cut(s) 94, 591
Sau96I GGNCC 2 cut(s) 54, 539
ScaI AGTACT 1 cut(s) 464
ScrFI CCNGG 2 cut(s) 231, 249
SduI GDGCHC 1 cut(s) 66
SfcI CTRYAG 1 cut(s) 200
SinI GGWCC 1 cut(s) 54
Sse9I AATT 3 cut(s) 304, 555, 581
SsiI CCGC 1 cut(s) 14
StyD4I CCNGG 2 cut(s) 229, 247
TaiI ACGT 2 cut(s) 11, 218
TasI AATT 3 cut(s) 304, 555, 581
TatI WGTACW 1 cut(s) 462
TfiI GAWTC 1 cut(s) 576
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 1 cut(s) 565
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 3 cut(s) 125, 140, 588
TspGWI ACGGA 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 54
XmnI GAANNNNTTC 1 cut(s) 434
ZraI GACGTC 1 cut(s) 9
ZrmI AGTACT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.