pycom07g24540

Cleavage and polyadenylation specificity factor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0015102
Physical Location & Seq
Forward (+)
25212374 .. 25214525
2152 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g24540.3

Sequence Viewer

Length: 603 bp
ATGGTGATGTCGGCGGTGGTGAACACGTACCCGCTGTCGAGCTACACGTTCGGGACCAAAGAGCCGAAGATGGAGAAGGACACTTCCGTCGCCGATCGCCTCGCCCGCATGAAAGTCAATTACATGAAAGAGGGAATGCGGACCAGCGTCGAAGCGATTTTACTGGTACAGGAACATAATCATCCCCACATACTTCTCCTGCAGATTGGAAACACATTCTGCAAACTTCCTGGTGGACGACTGAAGCCAGGGGAGAATGAAATTGAGGGGTTGAAAAGAAAGCTGACCAGCAAGCTTGGTGCTAATTCACCTGCCCTTGTGCCAGATTGGCAGATAGGAGAGTGCGTGGCTATCTGGTGGAGGCCAAACTTTGAAACCATAATGTATCCATATTGCCCTCCTCACATAACAAAACCCAAGGAGTGTAAGAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAGTACTTTGCTGTCCCCAAAAACCTAAAACTTCTTGCTGTTCCATTGTTTGAGCTCTATGATAACGTTCAGAGATATGGGCCTGTTATATCTACAATCCCACAGCAGCTTTCCAGATTCCAGTTTAACATGATCAGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010608 GO:0010628 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0017091 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031325 GO:0031437 GO:0031439 GO:0031440 GO:0031442 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042382 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050684 GO:0050685 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051259 GO:0051262 GO:0051290 GO:0051291 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0110104 GO:1900363 GO:1900365 GO:1901360 GO:1901363 GO:1901532 GO:1901534 GO:1903311 GO:1903313 GO:1903706 GO:1903708 GO:1905456 GO:1905458 GO:1990120 GO:2000026 GO:2000736 GO:2000738 GO:2000973 GO:2000975
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
NUDIX_2

Protein Analysis

201

Amino Acids

22.91

Weight (kDa)

9.23

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25550
fragaria_vesca FvH4_7g29390
malus_domestica MD01G1199900.v1.1 MD07G1267800.v1.1
prunus_persica Prupe.2G293500_v2.0.a1
pyrus_communis pycom07g24540
rosa_chinensis RchiOBHm_Chr1g0377171
rosa_laevigata RLG00000026539
rosa_multiflora Rmu_ssc0000155.1_g000015
rosa_roxburghii Rroxscaffold_4G00281410
rosa_rugosa Rorug01G0401800
rosa_samantha Rh1AG419200 Rh1BG378300 Rh1CG392300 Rh1DG409000
rosa_wichuraiana Rw1G036770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 319
AasI GACNNNNNNGTC 1 cut(s) 86
Acc36I ACCTGC 1 cut(s) 319
AciI CCGC 4 cut(s) 14, 32, 106, 139
AclI AACGTT 1 cut(s) 525
AcuI CTGAAG 1 cut(s) 263
AfaI GTAC 3 cut(s) 29, 168, 464
AflIII ACRYGT 2 cut(s) 24, 45
AgsI TTSAA 2 cut(s) 274, 374
AjnI CCWGG 2 cut(s) 229, 247
AluBI AGCT 6 cut(s) 42, 283, 295, 433, 514, 568
AluI AGCT 6 cut(s) 42, 283, 295, 433, 514, 568
Alw21I GWGCWC 1 cut(s) 516
AoxI GGCC 2 cut(s) 362, 539
ApeKI GCWGC 1 cut(s) 565
Asp700I GAANNNNTTC 1 cut(s) 434
AspS9I GGNCC 3 cut(s) 54, 141, 539
AsuHPI GGTGA 3 cut(s) 16, 31, 300
AvaII GGWCC 2 cut(s) 54, 141
BanII GRGCYC 1 cut(s) 516
BarI GAAGNNNNNNTAC 2 cut(s) 144, 176
Bbv12I GWGCWC 1 cut(s) 516
BbvI GCAGC 1 cut(s) 577
BccI CCATC 1 cut(s) 64
BciT130I CCWGG 2 cut(s) 231, 249
BciVI GTATCC 1 cut(s) 396
BclI TGATCA 1 cut(s) 591
BfmI CTRYAG 1 cut(s) 200
BfuAI ACCTGC 1 cut(s) 319
BfuI GTATCC 1 cut(s) 396
BglI GCCNNNNNGGC 1 cut(s) 328
BisI GCNGC 1 cut(s) 566
BlsI GCNGC 1 cut(s) 567
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 2 cut(s) 231, 249
Bme18I GGWCC 2 cut(s) 54, 141
BmgT120I GGNCC 3 cut(s) 54, 141, 539
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 2 cut(s) 231, 249
BoxI GACNNNNGTC 1 cut(s) 146
BsaAI YACGTR 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 248, 417
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bse1I ACTGG 2 cut(s) 168, 580
BseBI CCWGG 2 cut(s) 231, 249
BseDI CCNNGG 2 cut(s) 248, 417
BseGI GGATG 1 cut(s) 181
BseMII CTCAG 1 cut(s) 444
BseNI ACTGG 2 cut(s) 168, 580
BseRI GAGGAG 1 cut(s) 390
BseXI GCAGC 1 cut(s) 577
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 2 cut(s) 364, 541
BsiEI CGRYCG 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 516
BslFI GGGAC 2 cut(s) 67, 458
BsmFI GGGAC 2 cut(s) 67, 458
BsmI GAATGC 1 cut(s) 141
BsnI GGCC 2 cut(s) 364, 541
Bsp1286I GDGCHC 1 cut(s) 516
Bsp143I GATC 2 cut(s) 94, 591
BspACI CCGC 4 cut(s) 14, 32, 106, 139
BspANI GGCC 2 cut(s) 364, 541
BspCNI CTCAG 1 cut(s) 445
BspHI TCATGA 1 cut(s) 599
BspLI GGNNCC 1 cut(s) 55
BspMAI CTGCAG 1 cut(s) 204
BspMI ACCTGC 1 cut(s) 319
BsrI ACTGG 2 cut(s) 168, 580
BssECI CCNNGG 2 cut(s) 248, 417
BssMI GATC 2 cut(s) 94, 591
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 2 cut(s) 231, 249
BstBAI YACGTR 1 cut(s) 27
BstC8I GCNNGC 2 cut(s) 106, 293
BstDEI CTNAG 1 cut(s) 453
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 2 cut(s) 97, 594
BstMBI GATC 2 cut(s) 94, 591
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 2 cut(s) 105, 328
BstNI CCWGG 2 cut(s) 231, 249
BstPAI GACNNNNGTC 1 cut(s) 146
BstSCI CCNGG 2 cut(s) 229, 247
BstSFI CTRYAG 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 577
BsuI GTATCC 1 cut(s) 396
BsuRI GGCC 2 cut(s) 364, 541
BtsCI GGATG 1 cut(s) 181
BveI ACCTGC 1 cut(s) 319
Cac8I GCNNGC 2 cut(s) 106, 293
CciI TCATGA 1 cut(s) 599
Cfr13I GGNCC 3 cut(s) 54, 141, 539
CseI GACGC 1 cut(s) 136
Csp6I GTAC 3 cut(s) 28, 167, 463
CviAII CATG 4 cut(s) 109, 124, 589, 600
CviQI GTAC 3 cut(s) 28, 167, 463
DdeI CTNAG 1 cut(s) 453
DpnI GATC 2 cut(s) 96, 593
DpnII GATC 2 cut(s) 94, 591
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
Ecl136II GAGCTC 1 cut(s) 514
Eco130I CCWWGG 1 cut(s) 417
Eco24I GRGCYC 1 cut(s) 516
Eco47I GGWCC 2 cut(s) 54, 141
Eco53kI GAGCTC 1 cut(s) 514
Eco57I CTGAAG 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 514
EcoRII CCWGG 2 cut(s) 229, 247
EcoT14I CCWWGG 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 516
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 4 cut(s) 112, 127, 592, 603
FaqI GGGAC 2 cut(s) 67, 458
FatI CATG 4 cut(s) 108, 123, 588, 599
FauI CCCGC 2 cut(s) 39, 113
FbaI TGATCA 1 cut(s) 591
Fnu4HI GCNGC 1 cut(s) 566
FokI GGATG 1 cut(s) 168
FriOI GRGCYC 1 cut(s) 516
Fsp4HI GCNGC 1 cut(s) 566
GluI GCNGC 1 cut(s) 566
HaeIII GGCC 2 cut(s) 364, 541
HgaI GACGC 1 cut(s) 136
Hin1II CATG 4 cut(s) 112, 127, 592, 603
HindIII AAGCTT 2 cut(s) 293, 431
HinfI GANTC 1 cut(s) 576
HphI GGTGA 3 cut(s) 16, 31, 300
Hpy166II GTNNAC 2 cut(s) 22, 236
Hpy188I TCNGA 2 cut(s) 454, 531
Hpy188III TCNNGA 3 cut(s) 52, 573, 600
Hpy8I GTNNAC 2 cut(s) 22, 236
Hpy99I CGWCG 2 cut(s) 92, 152
HpyAV CCTTC 1 cut(s) 70
HpyCH4IV ACGT 3 cut(s) 26, 47, 525
HpyCH4V TGCA 2 cut(s) 202, 222
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 328
HpyF3I CTNAG 1 cut(s) 453
HpySE526I ACGT 3 cut(s) 26, 47, 525
Hsp92II CATG 4 cut(s) 112, 127, 592, 603
Ksp22I TGATCA 1 cut(s) 591
Kzo9I GATC 2 cut(s) 94, 591
Lsp1109I GCAGC 1 cut(s) 577
MaeII ACGT 3 cut(s) 26, 47, 525
MalI GATC 2 cut(s) 96, 593
MboI GATC 2 cut(s) 94, 591
MboII GAAGA 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 516
MluCI AATT 3 cut(s) 118, 261, 304
MnlI CCTC 7 cut(s) 110, 124, 259, 354, 408, 411, 450
MroXI GAANNNNTTC 1 cut(s) 434
MseI TTAA 1 cut(s) 585
MspA1I CMGCKG 1 cut(s) 34
MspR9I CCNGG 2 cut(s) 231, 249
Mva1269I GAATGC 1 cut(s) 141
MvaI CCWGG 2 cut(s) 231, 249
MwoI GCNNNNNNNGC 2 cut(s) 105, 328
NdeII GATC 2 cut(s) 94, 591
NlaIII CATG 4 cut(s) 112, 127, 592, 603
NlaIV GGNNCC 1 cut(s) 55
PagI TCATGA 1 cut(s) 599
PaqCI CACCTGC 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PctI GAATGC 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 434
PfeI GAWTC 1 cut(s) 576
PkrI GCNGC 1 cut(s) 567
Ple19I CGATCG 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 27
PshAI GACNNNNGTC 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 516
Psp1406I AACGTT 1 cut(s) 525
Psp6I CCWGG 2 cut(s) 229, 247
PspGI CCWGG 2 cut(s) 229, 247
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 3 cut(s) 54, 141, 539
PstI CTGCAG 1 cut(s) 204
PvuI CGATCG 1 cut(s) 97
RsaI GTAC 3 cut(s) 29, 168, 464
RsaNI GTAC 3 cut(s) 28, 167, 463
SacI GAGCTC 1 cut(s) 516
SaqAI TTAA 1 cut(s) 585
SatI GCNGC 1 cut(s) 566
Sau3AI GATC 2 cut(s) 94, 591
Sau96I GGNCC 3 cut(s) 54, 141, 539
ScaI AGTACT 1 cut(s) 464
ScrFI CCNGG 2 cut(s) 231, 249
SduI GDGCHC 1 cut(s) 516
SfcI CTRYAG 1 cut(s) 200
SinI GGWCC 2 cut(s) 54, 141
Sse9I AATT 3 cut(s) 118, 261, 304
SsiI CCGC 4 cut(s) 14, 32, 106, 139
SstI GAGCTC 1 cut(s) 516
StyD4I CCNGG 2 cut(s) 229, 247
StyI CCWWGG 1 cut(s) 417
TaiI ACGT 3 cut(s) 29, 50, 528
TaqI TCGA 2 cut(s) 38, 150
TasI AATT 3 cut(s) 118, 261, 304
TatI WGTACW 1 cut(s) 462
TfiI GAWTC 1 cut(s) 576
Tru1I TTAA 1 cut(s) 585
Tru9I TTAA 1 cut(s) 585
TseI GCWGC 1 cut(s) 565
TspDTI ATGAA 5 cut(s) 125, 140, 273, 434, 588
TspGWI ACGGA 1 cut(s) 76
VpaK11BI GGWCC 2 cut(s) 54, 141
XmnI GAANNNNTTC 1 cut(s) 434
ZrmI AGTACT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.