Rh1BG378300

Cleavage and polyadenylation specificity factor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0015102
Physical Location & Seq
Forward (+)
50763956 .. 50769123
5168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG378300.1

Sequence Viewer

Length: 480 bp
ATGAAAGAGGGGATGAGGACAAGCGTCGAAGCTATTTTACTGGTACAGGAACATAATCATCCCCACATACTGCTTCTGCAGATTGGAAACACGTTCTGCAAACTTCCTGGTGGACGACTGAAGCCTGGGGAGAATGAGATTGAGGGGCTGAAAAGAAAGCTCACCAGCAAACTTGGTGCTAATTCAGCAAACCTTGTCCCTGATTGGCAGATAGGAGAATGCGTCGCTATCTGGTGGAGGCCAAACTTTGAAACCATAATGTATCCATATTGCCCTCCTCACATAACAAAACCAAAGGAGTGCAAGAAGCTTTTCCTTGTTCACTTATCTGAGAGGGAGTACTTTGCTGTGCCAAAGAACCTAAAACTCCTTGCTGTTCCGTTGTTTGAACTCTATGACAATGTTCAGAGATATGGGCCTGTTATATCTACAATTCCTCAGCAGCTTTCCAGATTCCAATTCAACATGATCAGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010608 GO:0010628 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0017091 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031325 GO:0031437 GO:0031439 GO:0031440 GO:0031442 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042382 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050684 GO:0050685 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051259 GO:0051262 GO:0051290 GO:0051291 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0110104 GO:1900363 GO:1900365 GO:1901360 GO:1901363 GO:1901532 GO:1901534 GO:1903311 GO:1903313 GO:1903706 GO:1903708 GO:1905456 GO:1905458 GO:1990120 GO:2000026 GO:2000736 GO:2000738 GO:2000973 GO:2000975
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
NUDIX_2

Protein Analysis

159

Amino Acids

18.29

Weight (kDa)

9.08

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX_2 PF13869 2 - 152 1.1e-71 Nucleotide hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25550
fragaria_vesca FvH4_7g29390
malus_domestica MD01G1199900.v1.1 MD07G1267800.v1.1
prunus_persica Prupe.2G293500_v2.0.a1
pyrus_communis pycom07g24540
rosa_chinensis RchiOBHm_Chr1g0377171
rosa_laevigata RLG00000026539
rosa_multiflora Rmu_ssc0000155.1_g000015
rosa_roxburghii Rroxscaffold_4G00281410
rosa_rugosa Rorug01G0401800
rosa_samantha Rh1AG419200 Rh1BG378300 Rh1CG392300 Rh1DG409000
rosa_wichuraiana Rw1G036770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 2 cut(s) 45, 341
AflIII ACRYGT 1 cut(s) 90
AgsI TTSAA 3 cut(s) 251, 389, 463
AjnI CCWGG 2 cut(s) 106, 124
AluBI AGCT 4 cut(s) 32, 160, 310, 445
AluI AGCT 4 cut(s) 32, 160, 310, 445
AoxI GGCC 2 cut(s) 239, 416
ApeKI GCWGC 1 cut(s) 442
Asp700I GAANNNNTTC 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 416
AsuHPI GGTGA 1 cut(s) 154
BarI GAAGNNNNNNTAC 2 cut(s) 21, 53
BbvCI CCTCAGC 1 cut(s) 438
BbvI GCAGC 1 cut(s) 454
BciT130I CCWGG 2 cut(s) 108, 126
BciVI GTATCC 1 cut(s) 273
BclI TGATCA 1 cut(s) 468
BfmI CTRYAG 1 cut(s) 77
BfuI GTATCC 1 cut(s) 273
BisI GCNGC 1 cut(s) 443
BlsI GCNGC 1 cut(s) 444
BmcAI AGTACT 1 cut(s) 341
Bme1390I CCNGG 2 cut(s) 108, 126
BmgT120I GGNCC 1 cut(s) 416
BmrFI CCNGG 2 cut(s) 108, 126
BoxI GACNNNNGTC 1 cut(s) 23
Bpu10I CCTNAGC 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 125
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bse1I ACTGG 1 cut(s) 45
BseBI CCWGG 2 cut(s) 108, 126
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 2 cut(s) 18, 58
BseMII CTCAG 2 cut(s) 321, 452
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 454
BshFI GGCC 2 cut(s) 241, 418
BslFI GGGAC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 182
BsmI GAATGC 1 cut(s) 224
BsnI GGCC 2 cut(s) 241, 418
Bsp143I GATC 1 cut(s) 468
BspANI GGCC 2 cut(s) 241, 418
BspCNI CTCAG 2 cut(s) 322, 451
BspHI TCATGA 1 cut(s) 476
BspMAI CTGCAG 1 cut(s) 81
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 1 cut(s) 468
Bst2UI CCWGG 2 cut(s) 108, 126
BstDEI CTNAG 2 cut(s) 330, 438
BstF5I GGATG 2 cut(s) 18, 58
BstKTI GATC 1 cut(s) 471
BstMBI GATC 1 cut(s) 468
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 2 cut(s) 108, 126
BstPAI GACNNNNGTC 1 cut(s) 23
BstSCI CCNGG 2 cut(s) 106, 124
BstSFI CTRYAG 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 454
BsuI GTATCC 1 cut(s) 273
BsuRI GGCC 2 cut(s) 241, 418
BtsCI GGATG 2 cut(s) 18, 58
CciI TCATGA 1 cut(s) 476
Cfr13I GGNCC 1 cut(s) 416
CseI GACGC 2 cut(s) 13, 211
Csp6I GTAC 2 cut(s) 44, 340
CviAII CATG 2 cut(s) 466, 477
CviJI RGCY 8 cut(s) 32, 124, 148, 160, 241, 310, 418, 445
CviKI_1 RGCY 8 cut(s) 32, 124, 148, 160, 241, 310, 418, 445
CviQI GTAC 2 cut(s) 44, 340
DdeI CTNAG 2 cut(s) 330, 438
DpnI GATC 1 cut(s) 470
DpnII GATC 1 cut(s) 468
Eco57I CTGAAG 1 cut(s) 140
EcoRII CCWGG 2 cut(s) 106, 124
FaeI CATG 2 cut(s) 469, 480
FaqI GGGAC 1 cut(s) 182
FatI CATG 2 cut(s) 465, 476
FbaI TGATCA 1 cut(s) 468
Fnu4HI GCNGC 1 cut(s) 443
FokI GGATG 2 cut(s) 25, 45
Fsp4HI GCNGC 1 cut(s) 443
GluI GCNGC 1 cut(s) 443
HaeIII GGCC 2 cut(s) 241, 418
HgaI GACGC 2 cut(s) 13, 211
Hin1II CATG 2 cut(s) 469, 480
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 1 cut(s) 453
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 2 cut(s) 113, 322
Hpy188I TCNGA 2 cut(s) 331, 408
Hpy188III TCNNGA 2 cut(s) 450, 477
Hpy8I GTNNAC 2 cut(s) 113, 322
Hpy99I CGWCG 2 cut(s) 29, 227
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 3 cut(s) 79, 99, 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 2 cut(s) 330, 438
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 2 cut(s) 469, 480
Ksp22I TGATCA 1 cut(s) 468
Kzo9I GATC 1 cut(s) 468
Lsp1109I GCAGC 1 cut(s) 454
MaeII ACGT 1 cut(s) 92
MalI GATC 1 cut(s) 470
MboI GATC 1 cut(s) 468
MluCI AATT 3 cut(s) 181, 432, 458
MnlI CCTC 7 cut(s) 9, 136, 231, 285, 288, 327, 447
MroXI GAANNNNTTC 1 cut(s) 311
MspR9I CCNGG 2 cut(s) 108, 126
Mva1269I GAATGC 1 cut(s) 224
MvaI CCWGG 2 cut(s) 108, 126
MwoI GCNNNNNNNGC 1 cut(s) 185
NdeII GATC 1 cut(s) 468
NlaIII CATG 2 cut(s) 469, 480
PagI TCATGA 1 cut(s) 476
PctI GAATGC 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 453
PkrI GCNGC 1 cut(s) 444
PshAI GACNNNNGTC 1 cut(s) 23
Psp6I CCWGG 2 cut(s) 106, 124
PspGI CCWGG 2 cut(s) 106, 124
PspPI GGNCC 1 cut(s) 416
PstI CTGCAG 1 cut(s) 81
RsaI GTAC 2 cut(s) 45, 341
RsaNI GTAC 2 cut(s) 44, 340
SatI GCNGC 1 cut(s) 443
Sau3AI GATC 1 cut(s) 468
Sau96I GGNCC 1 cut(s) 416
ScaI AGTACT 1 cut(s) 341
ScrFI CCNGG 2 cut(s) 108, 126
SetI ASST 7 cut(s) 34, 95, 162, 195, 312, 363, 447
SfcI CTRYAG 1 cut(s) 77
Sse9I AATT 3 cut(s) 181, 432, 458
StyD4I CCNGG 2 cut(s) 106, 124
TaiI ACGT 1 cut(s) 95
TaqI TCGA 1 cut(s) 27
TasI AATT 3 cut(s) 181, 432, 458
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 1 cut(s) 453
TseI GCWGC 1 cut(s) 442
TspDTI ATGAA 2 cut(s) 17, 465
TspGWI ACGGA 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 311
ZrmI AGTACT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.