Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019136

Physical Location & Seq

Genomic Coordinates Forward (+)

13074090 .. 13076432

Gene Structure 2343 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAGACCTCCTCTAACTGGAAGTGGTGGTGGGTTCAGTGGTGGAAGAGGGCGTGGTGGATACAGTGGTGGTAGAGGTGACGGTGGATTCAGTGGTGGTCGAGGTGGCGGTGGTAGAGGAGGAGGAAGAGGTTTCAGCGACCGTGGTGGTCGCGGCAGAGGAAGAGGACCACCACGTGGTGGTGCTCGCGGCGGCAGAGGACCAGCTGGCCGTGGAGGCATGAAAGGAGGAAGCAAAGTGATTGTGGAACCTCACAGACACGCAGGAGTGTTCATTGCAAAGGGTAAAGAAGATGCCCTTGTTACCAAGAATTTGGTTCCTGGTGAAGCTGTCTACAACGAGAAGAGAATCTCTGTTCAGAACGAAGATGGAACCAAGACTGAATACAGAGTTTGGAATCCTTTCCGTTCGAAGTTGGCTGCTGCTATTCTTGGTGGTGTTGATAACATCTGGATTAAACCTGGTGCTAAAGTTCTATACCTTGGTGCTGCTTCTGGAACCACAGTCTCTCATGTGTCTGATCTTGTTGGCCCTGAGGGGTGTGTGTACGCGGTTGAGTTTTCTCATAGAAGTGGTAGAGATTTGGTGAACATGGCAAAGAAGAGAACCAATGTTATTCCAATCATCGAGGATGCTAGACACCCAGCTAAATACAGAATGCTTGTAGGCATGGTTGATGTTATCTTCTCTGATGTTGCTCAGCCAGATCAGGCTAGGATCTTGGCTTTGAATGCATCATACTTCCTCAAGTCAGGAGGACACTTTGTGATCTCAATAAAGGCAAACTGTATCGACTCCACCGTTCCAGCAGAAGCTGTGTTCCAGACTGAAGTGAAGAAGCTTCAACAGGAGCAATTCAAACCAGCTGAGCAAGTGACGCTTGAGCCATTTGAGCGTGACCATGCATGTGTCGTTGGTGGCTACCGTATGCCTAAGAAGCCAAAGGCTGCTACTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000494 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0006139 GO:0006325 GO:0006364 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008213 GO:0008276 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0015030 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0016569 GO:0016570 GO:0016571 GO:0016592 GO:0016604 GO:0016740 GO:0016741 GO:0016787 GO:0016788 GO:0018364 GO:0019538 GO:0022613 GO:0030515 GO:0030684 GO:0031123 GO:0031126 GO:0031167 GO:0031428 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0033967 GO:0034470 GO:0034641 GO:0034660 GO:0034963 GO:0036009 GO:0036211 GO:0042054 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1901564 GO:1990258 GO:1990259 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fibrillarin

Protein Analysis

320

Amino Acids

33.65

Weight (kDa)

10.08

Isoelectric Point (pI)

30.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fibrillarin	PF01269	82 - 309	2e-110	Fibrillarin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25630 AT5G52470
malus_domestica	MD01G1206000.v1.1 MD07G1276800.v1.1
prunus_persica	Prupe.8G059700_v2.0.a1 Prupe.8G117100_v2.0.a1
pyrus_communis	pycom01g21570 pycom07g25170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	176, 179
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	3 cut(s)	153, 189, 551
AciI	CCGC	5 cut(s)	108, 153, 189, 192, 551
AclWI	GGATC	1 cut(s)	725
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	849
AcvI	CACGTG	1 cut(s)	176
AdeI	CACNNNGTG	3 cut(s)	176, 179, 766
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	3 cut(s)	17, 176, 179
AgsI	TTSAA	3 cut(s)	730, 845, 859
AjnI	CCWGG	2 cut(s)	319, 460
AluBI	AGCT	6 cut(s)	206, 329, 647, 815, 841, 866
AluI	AGCT	6 cut(s)	206, 329, 647, 815, 841, 866
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	1 cut(s)	511
AlwI	GGATC	1 cut(s)	725
AlwNI	CAGNNNCTG	1 cut(s)	815
AoxI	GGCC	2 cut(s)	208, 529
ApeKI	GCWGC	5 cut(s)	419, 422, 488, 947, 956
ApoI	RAATTY	1 cut(s)	310
Asp700I	GAANNNNTTC	1 cut(s)	401
AspS9I	GGNCC	3 cut(s)	167, 200, 530
AsuHPI	GGTGA	3 cut(s)	89, 335, 598
AsuII	TTCGAA	1 cut(s)	410
AvaII	GGWCC	2 cut(s)	167, 200
AxyI	CCTNAGG	1 cut(s)	534
BaeI	ACNNNNGTAYC	2 cut(s)	52, 85
BbrPI	CACGTG	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	187
BbvI	GCAGC	5 cut(s)	406, 409, 475, 934, 943
BccI	CCATC	1 cut(s)	362
BceAI	ACGGC	1 cut(s)	195
BciT130I	CCWGG	2 cut(s)	321, 462
BciVI	GTATCC	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	511
BfaI	CTAG	2 cut(s)	636, 714
BfuI	GTATCC	1 cut(s)	53
BglI	GCCNNNNNGGC	1 cut(s)	216
BisI	GCNGC	8 cut(s)	154, 190, 193, 420, 423, 489, 948, 957
BlpI	GCTNAGC	2 cut(s)	699, 867
BlsI	GCNGC	8 cut(s)	155, 191, 194, 421, 424, 490, 949, 958
Bme1390I	CCNGG	2 cut(s)	321, 462
Bme18I	GGWCC	2 cut(s)	167, 200
BmgT120I	GGNCC	3 cut(s)	167, 200, 530
BmiI	GGNNCC	4 cut(s)	249, 318, 373, 499
BmrFI	CCNGG	2 cut(s)	321, 462
BmsI	GCATC	3 cut(s)	283, 622, 743
BplI	GAGNNNNNCTC	1 cut(s)	27
Bpu1102I	GCTNAGC	2 cut(s)	699, 867
Bpu14I	TTCGAA	1 cut(s)	410
BpuEI	CTTGAG	2 cut(s)	731, 902
BsaAI	YACGTR	1 cut(s)	176
BsaJI	CCNNGG	3 cut(s)	142, 211, 481
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 176, 179
Bse1I	ACTGG	1 cut(s)	22
Bse21I	CCTNAGG	1 cut(s)	534
Bse3DI	GCAATG	1 cut(s)	273
BseBI	CCWGG	2 cut(s)	321, 462
BseDI	CCNNGG	3 cut(s)	142, 211, 481
BseGI	GGATG	1 cut(s)	637
BseLI	CCNNNNNNNGG	3 cut(s)	17, 176, 179
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	3 cut(s)	525, 713, 858
BseNI	ACTGG	1 cut(s)	22
BseRI	GAGGAG	2 cut(s)	132, 135
BseXI	GCAGC	5 cut(s)	406, 409, 475, 934, 943
BseYI	CCCAGC	1 cut(s)	643
Bsh1236I	CGCG	3 cut(s)	153, 189, 551
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	2 cut(s)	210, 531
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	187
BslI	CCNNNNNNNGG	3 cut(s)	17, 176, 179
BsmAI	GTCTC	1 cut(s)	511
BsmI	GAATGC	2 cut(s)	663, 736
BsnI	GGCC	2 cut(s)	210, 531
Bsp119I	TTCGAA	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	4 cut(s)	520, 706, 717, 768
Bsp1720I	GCTNAGC	2 cut(s)	699, 867
BspACI	CCGC	5 cut(s)	108, 153, 189, 192, 551
BspANI	GGCC	2 cut(s)	210, 531
BspCNI	CTCAG	3 cut(s)	526, 712, 859
BspFNI	CGCG	3 cut(s)	153, 189, 551
BspLI	GGNNCC	4 cut(s)	249, 318, 373, 499
BspPI	GGATC	1 cut(s)	725
BspT104I	TTCGAA	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	3 cut(s)	142, 211, 481
BssMI	GATC	4 cut(s)	520, 706, 717, 768
BssT1I	CCWWGG	1 cut(s)	481
Bst2UI	CCWGG	2 cut(s)	321, 462
Bst4CI	ACNGT	7 cut(s)	65, 83, 143, 505, 788, 802, 926
Bst6I	CTCTTC	5 cut(s)	40, 121, 157, 338, 596
BstBAI	YACGTR	1 cut(s)	176
BstBI	TTCGAA	1 cut(s)	410
BstC8I	GCNNGC	2 cut(s)	187, 208
BstDEI	CTNAG	5 cut(s)	534, 699, 867, 933, 960
BstDSI	CCRYGG	2 cut(s)	142, 211
BstF5I	GGATG	1 cut(s)	637
BstFNI	CGCG	3 cut(s)	153, 189, 551
BstKTI	GATC	4 cut(s)	523, 709, 720, 771
BstMAI	GTCTC	1 cut(s)	511
BstMBI	GATC	4 cut(s)	520, 706, 717, 768
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	7 cut(s)	216, 731, 877, 892, 937, 953, 956
BstNI	CCWGG	2 cut(s)	321, 462
BstNSI	RCATGY	1 cut(s)	909
BstSCI	CCNGG	2 cut(s)	319, 460
BstUI	CGCG	3 cut(s)	153, 189, 551
BstV1I	GCAGC	5 cut(s)	406, 409, 475, 934, 943
BstX2I	RGATCY	1 cut(s)	717
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	717
Bsu36I	CCTNAGG	1 cut(s)	534
BsuI	GTATCC	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	210, 531
BtgI	CCRYGG	2 cut(s)	142, 211
BtsCI	GGATG	1 cut(s)	637
BtsIMutI	CAGTG	3 cut(s)	43, 70, 97
Cac8I	GCNNGC	2 cut(s)	187, 208
CaiI	CAGNNNCTG	1 cut(s)	815
Cfr13I	GGNCC	3 cut(s)	167, 200, 530
CseI	GACGC	1 cut(s)	886
CsiI	ACCWGGT	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	6 cut(s)	220, 512, 592, 670, 902, 906
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	5 cut(s)	534, 699, 867, 933, 960
DpnI	GATC	4 cut(s)	522, 708, 719, 770
DpnII	GATC	4 cut(s)	520, 706, 717, 768
DraIII	CACNNNGTG	3 cut(s)	176, 179, 766
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	5 cut(s)	40, 121, 157, 338, 596
EarI	CTCTTC	5 cut(s)	40, 121, 157, 338, 596
Eco130I	CCWWGG	1 cut(s)	481
Eco47I	GGWCC	2 cut(s)	167, 200
Eco57I	CTGAAG	1 cut(s)	849
Eco72I	CACGTG	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	534
EcoRII	CCWGG	2 cut(s)	319, 460
EcoT14I	CCWWGG	1 cut(s)	481
EcoT22I	ATGCAT	2 cut(s)	736, 907
ErhI	CCWWGG	1 cut(s)	481
FaeI	CATG	6 cut(s)	223, 515, 595, 673, 905, 909
FalI	AAGNNNNNCTT	4 cut(s)	282, 314, 864, 896
FatI	CATG	6 cut(s)	219, 511, 591, 669, 901, 905
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	8 cut(s)	154, 190, 193, 420, 423, 489, 948, 957
FokI	GGATG	1 cut(s)	644
Fsp4HI	GCNGC	8 cut(s)	154, 190, 193, 420, 423, 489, 948, 957
FspBI	CTAG	2 cut(s)	636, 714
GluI	GCNGC	8 cut(s)	154, 190, 193, 420, 423, 489, 948, 957
GsaI	CCCAGC	1 cut(s)	647
HaeIII	GGCC	2 cut(s)	210, 531
HgaI	GACGC	1 cut(s)	886
Hin1II	CATG	6 cut(s)	223, 515, 595, 673, 905, 909
HindIII	AAGCTT	1 cut(s)	839
HinfI	GANTC	4 cut(s)	87, 348, 397, 794
HphI	GGTGA	3 cut(s)	89, 335, 598
Hpy166II	GTNNAC	3 cut(s)	334, 547, 589
Hpy188I	TCNGA	3 cut(s)	360, 520, 691
Hpy188III	TCNNGA	4 cut(s)	451, 495, 753, 823
Hpy8I	GTNNAC	3 cut(s)	334, 547, 589
HpyCH4III	ACNGT	7 cut(s)	65, 83, 143, 505, 788, 802, 926
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	3 cut(s)	278, 734, 905
HpyF10VI	GCNNNNNNNGC	7 cut(s)	216, 731, 877, 892, 937, 953, 956
HpyF3I	CTNAG	5 cut(s)	534, 699, 867, 933, 960
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	6 cut(s)	223, 515, 595, 673, 905, 909
Kzo9I	GATC	4 cut(s)	520, 706, 717, 768
LmnI	GCTCC	1 cut(s)	850
Lsp1109I	GCAGC	5 cut(s)	406, 409, 475, 934, 943
LweI	GCATC	3 cut(s)	283, 622, 743
MabI	ACCWGGT	1 cut(s)	460
MaeI	CTAG	2 cut(s)	636, 714
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	4 cut(s)	77, 301, 874, 896
MalI	GATC	4 cut(s)	522, 708, 719, 770
MboI	GATC	4 cut(s)	520, 706, 717, 768
MboII	GAAGA	9 cut(s)	57, 138, 174, 302, 355, 377, 613, 676, 847
MflI	RGATCY	1 cut(s)	717
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	2 cut(s)	310, 854
MlyI	GAGTC	1 cut(s)	788
Mph1103I	ATGCAT	2 cut(s)	736, 907
MroXI	GAANNNNTTC	1 cut(s)	401
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	2 cut(s)	570, 906
MspA1I	CMGCKG	2 cut(s)	206, 866
MspR9I	CCNGG	2 cut(s)	321, 462
Mva1269I	GAATGC	2 cut(s)	663, 736
MvaI	CCWGG	2 cut(s)	321, 462
MvnI	CGCG	3 cut(s)	153, 189, 551
MwoI	GCNNNNNNNGC	7 cut(s)	216, 731, 877, 892, 937, 953, 956
NdeII	GATC	4 cut(s)	520, 706, 717, 768
NlaIII	CATG	6 cut(s)	223, 515, 595, 673, 905, 909
NlaIV	GGNNCC	4 cut(s)	249, 318, 373, 499
NmuCI	GTSAC	3 cut(s)	77, 874, 896
NsiI	ATGCAT	2 cut(s)	736, 907
NspI	RCATGY	1 cut(s)	909
NspV	TTCGAA	1 cut(s)	410
PcsI	WCGNNNNNNNCGW	1 cut(s)	798
PctI	GAATGC	2 cut(s)	663, 736
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	3 cut(s)	87, 348, 397
PflMI	CCANNNNNTGG	2 cut(s)	176, 179
PkrI	GCNGC	8 cut(s)	155, 191, 194, 421, 424, 490, 949, 958
PleI	GAGTC	1 cut(s)	788
PmaCI	CACGTG	1 cut(s)	176
PmlI	CACGTG	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	788
Ppu21I	YACGTR	1 cut(s)	176
Psp6I	CCWGG	2 cut(s)	319, 460
PspCI	CACGTG	1 cut(s)	176
PspFI	CCCAGC	1 cut(s)	643
PspGI	CCWGG	2 cut(s)	319, 460
PspN4I	GGNNCC	4 cut(s)	249, 318, 373, 499
PspPI	GGNCC	3 cut(s)	167, 200, 530
PstNI	CAGNNNCTG	1 cut(s)	815
PsuI	RGATCY	1 cut(s)	717
PvuII	CAGCTG	2 cut(s)	206, 866
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
RseI	CAYNNNNRTG	2 cut(s)	570, 906
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	8 cut(s)	154, 190, 193, 420, 423, 489, 948, 957
Sau3AI	GATC	4 cut(s)	520, 706, 717, 768
Sau96I	GGNCC	3 cut(s)	167, 200, 530
SchI	GAGTC	1 cut(s)	788
ScrFI	CCNGG	2 cut(s)	321, 462
SduI	GDGCHC	1 cut(s)	187
SexAI	ACCWGGT	1 cut(s)	460
SfaNI	GCATC	3 cut(s)	283, 622, 743
SfuI	TTCGAA	1 cut(s)	410
SinI	GGWCC	2 cut(s)	167, 200
SmiMI	CAYNNNNRTG	2 cut(s)	570, 906
SmlI	CTYRAG	2 cut(s)	746, 881
SmoI	CTYRAG	2 cut(s)	746, 881
Sse9I	AATT	2 cut(s)	310, 854
SsiI	CCGC	5 cut(s)	108, 153, 189, 192, 551
SspMI	CTAG	2 cut(s)	636, 714
StyD4I	CCNGG	2 cut(s)	319, 460
StyI	CCWWGG	1 cut(s)	481
TaaI	ACNGT	7 cut(s)	65, 83, 143, 505, 788, 802, 926
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	4 cut(s)	100, 410, 627, 792
TasI	AATT	2 cut(s)	310, 854
TauI	GCSGC	3 cut(s)	156, 192, 195
TfiI	GAWTC	3 cut(s)	87, 348, 397
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	3 cut(s)	43, 70, 97
TseFI	GTSAC	3 cut(s)	77, 874, 896
TseI	GCWGC	5 cut(s)	419, 422, 488, 947, 956
Tsp45I	GTSAC	3 cut(s)	77, 874, 896
TspDTI	ATGAA	2 cut(s)	236, 262
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	3 cut(s)	43, 70, 97
Van91I	CCANNNNNTGG	2 cut(s)	176, 179
VpaK11BI	GGWCC	2 cut(s)	167, 200
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	1 cut(s)	909
XmiI	GTMKAC	1 cut(s)	333
XmnI	GAANNNNTTC	1 cut(s)	401
XspI	CTAG	2 cut(s)	636, 714
Zsp2I	ATGCAT	2 cut(s)	736, 907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.