Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0019136

Physical Location & Seq

Genomic Coordinates Forward (+)

25597272 .. 25599719

Gene Structure 2448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25170.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCTGCAAAGTCGTGGTGGTAGTGGTGGATTCAGGGGCGGTAGGGGTGACAGAGGTGGAAGAAGTGGAGGTAGGTCTGGTGGTGGTAGAGGTTTTGACAGAGGTGGTAGTGGCTTTAAATCCCGTGGGCGTAGTGATCGCGGACGTGGTGATCGCGGAAGAGGCCGTGGGAGAGGAGGAATGAAGGGTGGTAACAAAGTGGTGGTTGAGCCTCACAGACATGAAGGTGTTTTCATTGGTAAGGGTAAAGAAGATGCTCTTGTTACCAAGAATCTTGTTCCTGGTGAAGCTGTCTACAATGAGAAGAGGATTTCTGTTCAGAATGAGGATGGAACAAAAGTTGAGTATAGGATTTGGAACCCTTTCCGTTCCAAGTTGGCTGCAGCCATTCTTGGTGGTGTTGATAATATATGGATTAAACCTGGTGCTAAAGTTCTCTACCTCGGGGCTGCTTCTGGAACTACAGTCTCTCATGTGTCTGACATTGTTGGCCCTACTGGAGTTGTCTATGCAGTTGAGTTCTCTCATAGAAGTGGCAGAGACTTAGTAAATATGGCTAAGAAGCGCACAAATGTCATACCCATTATTGAAGATGCCAGACATCCAGCTAAATATCGGATGCTTGTTGGCATGGTTGATGTGATATTCTCTGATGTTGCACAACCTGATCAGGCTAGGATTGTTGCATTGAATGCATCATATTTTCTGAAAGCAGGAGGCCACTTTGTTATCTCAATCAAGGCCAATTGCATTGATTCAACATCACCCGCGGAAGCAGTGTTCCAATCAGAGGTCAAGAAGCTTCAGGAAGAGCAATTCAAGCCTGCAGAACAAGTCACTCTTGAACCTTTTGAGCGCGACCATGCTTGCGTGGTTGGTGGCTATCGTATGCCGAAGAAGTCGAAAGCTGGCAACGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000494 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0006139 GO:0006325 GO:0006364 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008213 GO:0008276 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0015030 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0016569 GO:0016570 GO:0016571 GO:0016592 GO:0016604 GO:0016740 GO:0016741 GO:0016787 GO:0016788 GO:0018364 GO:0019538 GO:0022613 GO:0030515 GO:0030684 GO:0031123 GO:0031126 GO:0031167 GO:0031428 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0033967 GO:0034470 GO:0034641 GO:0034660 GO:0034963 GO:0036009 GO:0036211 GO:0042054 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1901564 GO:1990258 GO:1990259 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fibrillarin

Protein Analysis

307

Amino Acids

32.85

Weight (kDa)

10.08

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25630 AT5G52470
malus_domestica	MD01G1206000.v1.1 MD07G1276800.v1.1
prunus_persica	Prupe.8G059700_v2.0.a1 Prupe.8G117100_v2.0.a1
pyrus_communis	pycom01g21570 pycom07g25170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	4 cut(s)	141, 156, 770, 858
AciI	CCGC	5 cut(s)	39, 141, 156, 768, 770
AcuI	CTGAAG	1 cut(s)	788
AfiI	CCNNNNNNNGG	1 cut(s)	790
AgsI	TTSAA	5 cut(s)	590, 691, 759, 820, 845
AjiI	CACGTC	1 cut(s)	146
AjnI	CCWGG	2 cut(s)	280, 421
AloI	GAACNNNNNNTCC	2 cut(s)	764, 796
AluBI	AGCT	4 cut(s)	290, 608, 802, 908
AluI	AGCT	4 cut(s)	290, 608, 802, 908
Alw26I	GTCTC	2 cut(s)	472, 534
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	4 cut(s)	163, 490, 718, 741
ApeKI	GCWGC	4 cut(s)	4, 380, 383, 449
Asp700I	GAANNNNTTC	1 cut(s)	362
AspLEI	GCGC	2 cut(s)	567, 858
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	4 cut(s)	59, 161, 296, 756
AvaI	CYCGRG	1 cut(s)	443
BbvI	GCAGC	3 cut(s)	367, 395, 436
BccI	CCATC	1 cut(s)	323
BceAI	ACGGC	1 cut(s)	150
BciT130I	CCWGG	2 cut(s)	282, 423
BclI	TGATCA	1 cut(s)	667
BcoDI	GTCTC	2 cut(s)	472, 534
BfaI	CTAG	2 cut(s)	675, 919
BfmI	CTRYAG	3 cut(s)	381, 462, 825
BisI	GCNGC	4 cut(s)	5, 381, 384, 450
BlsI	GCNGC	4 cut(s)	6, 382, 385, 451
Bme1390I	CCNGG	2 cut(s)	282, 423
BmeT110I	CYCGRG	1 cut(s)	443
BmgBI	CACGTC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	2 cut(s)	282, 423
BmsI	GCATC	4 cut(s)	244, 583, 609, 704
BpmI	CTGGAG	1 cut(s)	519
BsaJI	CCNNGG	4 cut(s)	124, 166, 442, 768
Bsc4I	CCNNNNNNNGG	1 cut(s)	790
Bse1I	ACTGG	1 cut(s)	502
BseBI	CCWGG	2 cut(s)	282, 423
BseDI	CCNNGG	4 cut(s)	124, 166, 442, 768
BseGI	GGATG	3 cut(s)	334, 601, 624
BseLI	CCNNNNNNNGG	1 cut(s)	790
BseNI	ACTGG	1 cut(s)	502
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	3 cut(s)	367, 395, 436
Bsh1236I	CGCG	4 cut(s)	141, 156, 770, 858
BshFI	GGCC	4 cut(s)	165, 492, 720, 743
BsiHKCI	CYCGRG	1 cut(s)	443
BslI	CCNNNNNNNGG	1 cut(s)	790
BsmAI	GTCTC	2 cut(s)	472, 534
BsmI	GAATGC	1 cut(s)	697
BsnI	GGCC	4 cut(s)	165, 492, 720, 743
BsoBI	CYCGRG	1 cut(s)	443
Bsp143I	GATC	3 cut(s)	136, 151, 667
BspACI	CCGC	5 cut(s)	39, 141, 156, 768, 770
BspANI	GGCC	4 cut(s)	165, 492, 720, 743
BspFNI	CGCG	4 cut(s)	141, 156, 770, 858
BspLI	GGNNCC	1 cut(s)	359
BspMAI	CTGCAG	2 cut(s)	385, 829
BspQI	GCTCTTC	1 cut(s)	804
BsrI	ACTGG	1 cut(s)	502
BssECI	CCNNGG	4 cut(s)	124, 166, 442, 768
BssMI	GATC	3 cut(s)	136, 151, 667
Bst2UI	CCWGG	2 cut(s)	282, 423
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	3 cut(s)	154, 299, 804
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstC8I	GCNNGC	3 cut(s)	825, 868, 910
BstDEI	CTNAG	2 cut(s)	544, 558
BstDSI	CCRYGG	3 cut(s)	124, 166, 768
BstF5I	GGATG	3 cut(s)	334, 601, 624
BstFNI	CGCG	4 cut(s)	141, 156, 770, 858
BstHHI	GCGC	2 cut(s)	567, 858
BstKTI	GATC	3 cut(s)	139, 154, 670
BstMAI	GTCTC	2 cut(s)	472, 534
BstMBI	GATC	3 cut(s)	136, 151, 667
BstMWI	GCNNNNNNNGC	4 cut(s)	162, 692, 820, 914
BstNI	CCWGG	2 cut(s)	282, 423
BstSCI	CCNGG	2 cut(s)	280, 421
BstSFI	CTRYAG	3 cut(s)	381, 462, 825
BstUI	CGCG	4 cut(s)	141, 156, 770, 858
BstV1I	GCAGC	3 cut(s)	367, 395, 436
BsuRI	GGCC	4 cut(s)	165, 492, 720, 743
BtgI	CCRYGG	3 cut(s)	124, 166, 768
BtrI	CACGTC	1 cut(s)	146
BtsCI	GGATG	3 cut(s)	334, 601, 624
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	1 cut(s)	783
Cac8I	GCNNGC	3 cut(s)	825, 868, 910
CfoI	GCGC	2 cut(s)	567, 858
Cfr13I	GGNCC	1 cut(s)	491
Cfr42I	CCGCGG	1 cut(s)	771
CsiI	ACCWGGT	1 cut(s)	421
CviAII	CATG	4 cut(s)	221, 473, 631, 863
DdeI	CTNAG	2 cut(s)	544, 558
DpnI	GATC	3 cut(s)	138, 153, 669
DpnII	GATC	3 cut(s)	136, 151, 667
DraI	TTTAAA	1 cut(s)	118
Eam1104I	CTCTTC	3 cut(s)	154, 299, 804
EarI	CTCTTC	3 cut(s)	154, 299, 804
Eco57I	CTGAAG	1 cut(s)	788
Eco88I	CYCGRG	1 cut(s)	443
EcoRII	CCWGG	2 cut(s)	280, 421
EcoT22I	ATGCAT	1 cut(s)	697
FaeI	CATG	4 cut(s)	224, 476, 634, 866
FalI	AAGNNNNNCTT	4 cut(s)	243, 275, 825, 857
FatI	CATG	4 cut(s)	220, 472, 630, 862
FauI	CCCGC	1 cut(s)	775
FbaI	TGATCA	1 cut(s)	667
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	4 cut(s)	5, 381, 384, 450
FokI	GGATG	3 cut(s)	341, 588, 631
Fsp4HI	GCNGC	4 cut(s)	5, 381, 384, 450
FspBI	CTAG	2 cut(s)	675, 919
GlaI	GCGC	2 cut(s)	566, 857
GluI	GCNGC	4 cut(s)	5, 381, 384, 450
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	4 cut(s)	165, 492, 720, 743
HhaI	GCGC	2 cut(s)	567, 858
Hin1II	CATG	4 cut(s)	224, 476, 634, 866
Hin6I	GCGC	2 cut(s)	565, 856
HinP1I	GCGC	2 cut(s)	565, 856
HindIII	AAGCTT	1 cut(s)	800
HinfI	GANTC	3 cut(s)	30, 271, 755
HphI	GGTGA	4 cut(s)	59, 161, 296, 756
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	6 cut(s)	321, 481, 618, 652, 708, 790
Hpy188III	TCNNGA	4 cut(s)	456, 796, 806, 842
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	2 cut(s)	178, 218
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	8 cut(s)	7, 383, 512, 659, 686, 695, 750, 827
HpyF10VI	GCNNNNNNNGC	4 cut(s)	162, 692, 820, 914
HpyF3I	CTNAG	2 cut(s)	544, 558
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	4 cut(s)	224, 476, 634, 866
HspAI	GCGC	2 cut(s)	565, 856
Ksp22I	TGATCA	1 cut(s)	667
KspI	CCGCGG	1 cut(s)	771
Kzo9I	GATC	3 cut(s)	136, 151, 667
LguI	GCTCTTC	1 cut(s)	804
Lsp1109I	GCAGC	3 cut(s)	367, 395, 436
LweI	GCATC	4 cut(s)	244, 583, 609, 704
MabI	ACCWGGT	1 cut(s)	421
MaeI	CTAG	2 cut(s)	675, 919
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	4 cut(s)	47, 191, 262, 835
MalI	GATC	3 cut(s)	138, 153, 669
MboI	GATC	3 cut(s)	136, 151, 667
MboII	GAAGA	7 cut(s)	72, 171, 263, 316, 602, 821, 907
MfeI	CAATTG	1 cut(s)	745
MluCI	AATT	2 cut(s)	745, 815
Mph1103I	ATGCAT	1 cut(s)	697
MroXI	GAANNNNTTC	1 cut(s)	362
MseI	TTAA	2 cut(s)	117, 417
MslI	CAYNNNNRTG	3 cut(s)	219, 225, 531
MspA1I	CMGCKG	1 cut(s)	770
MspR9I	CCNGG	2 cut(s)	282, 423
MunI	CAATTG	1 cut(s)	745
Mva1269I	GAATGC	1 cut(s)	697
MvaI	CCWGG	2 cut(s)	282, 423
MvnI	CGCG	4 cut(s)	141, 156, 770, 858
MwoI	GCNNNNNNNGC	4 cut(s)	162, 692, 820, 914
NdeII	GATC	3 cut(s)	136, 151, 667
NlaIII	CATG	4 cut(s)	224, 476, 634, 866
NlaIV	GGNNCC	1 cut(s)	359
NmuCI	GTSAC	2 cut(s)	47, 835
NsiI	ATGCAT	1 cut(s)	697
PciSI	GCTCTTC	1 cut(s)	804
PctI	GAATGC	1 cut(s)	697
PdmI	GAANNNNTTC	1 cut(s)	362
PfeI	GAWTC	3 cut(s)	30, 271, 755
PkrI	GCNGC	4 cut(s)	6, 382, 385, 451
Psp6I	CCWGG	2 cut(s)	280, 421
PspGI	CCWGG	2 cut(s)	280, 421
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	491
PstI	CTGCAG	2 cut(s)	385, 829
RseI	CAYNNNNRTG	3 cut(s)	219, 225, 531
SacII	CCGCGG	1 cut(s)	771
SapI	GCTCTTC	1 cut(s)	804
SaqAI	TTAA	2 cut(s)	117, 417
SatI	GCNGC	4 cut(s)	5, 381, 384, 450
Sau3AI	GATC	3 cut(s)	136, 151, 667
Sau96I	GGNCC	1 cut(s)	491
ScrFI	CCNGG	2 cut(s)	282, 423
SexAI	ACCWGGT	1 cut(s)	421
SfaNI	GCATC	4 cut(s)	244, 583, 609, 704
SfcI	CTRYAG	3 cut(s)	381, 462, 825
Sfr303I	CCGCGG	1 cut(s)	771
SgrBI	CCGCGG	1 cut(s)	771
SmiMI	CAYNNNNRTG	3 cut(s)	219, 225, 531
Sse9I	AATT	2 cut(s)	745, 815
SsiI	CCGC	5 cut(s)	39, 141, 156, 768, 770
SspMI	CTAG	2 cut(s)	675, 919
StyD4I	CCNGG	2 cut(s)	280, 421
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	1 cut(s)	902
TasI	AATT	2 cut(s)	745, 815
TfiI	GAWTC	3 cut(s)	30, 271, 755
Tru1I	TTAA	2 cut(s)	117, 417
Tru9I	TTAA	2 cut(s)	117, 417
TscAI	CASTG	1 cut(s)	783
TseFI	GTSAC	2 cut(s)	47, 835
TseI	GCWGC	4 cut(s)	4, 380, 383, 449
Tsp45I	GTSAC	2 cut(s)	47, 835
TspDTI	ATGAA	3 cut(s)	197, 223, 237
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	1 cut(s)	783
XmiI	GTMKAC	1 cut(s)	294
XmnI	GAANNNNTTC	1 cut(s)	362
XspI	CTAG	2 cut(s)	675, 919
Zsp2I	ATGCAT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.