Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0019136

Physical Location & Seq

Genomic Coordinates Reverse (-)

14393410 .. 14397239

Gene Structure 3830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G117100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCACCTCCTCGAGGTCGTGGTGGTAGCGGTGGCGGATTCAGGGGCAGGGGTGATGGAGGGAGAGGTGGAAGAGGAGGAGGCAGGTTTGGTGGTGGTGGAAGAGGCGGTGACAGAGGTGGTAGTGCCTTTAAAAGCCGTGGCGGAGGACGTGGTGGTGATCGTGGAGGCCGTGGAGGAAGAGGCCGTGGTGGTGGAAGGGGAGGAATGAAGGGTGGAAACAAAGTAGTTGTCGAGCCTCACAGGCATGAAGGGGTGTTCATTGCCAAGGGTAAAGAAGATGCTCTTGTAACCAAGAATATGGTGCCCGGGGAAGCTGTCTACAACGAGAAGAGGATATCTGTTCAGAATGAGGATGGAACAAAAGTTGAATATAGAATTTGGAACCCTTTCCGTTCTAAGTTGGCTGCAGCTATTCTCGGTGGTGTTGATGACATATGGATTAAACCTGGTGCTCGTGTTCTCTACCTTGGTGCTGCTTCTGGCACCACAGTGTCTCATGTGTCTGACATTGTTGGCCCTACTGGAGTTGTTTATGCAGTGGAGTTTTCTCACAGAAGTGGCAGAGACTTGGTAAACATGGCAAAGAAGCGCACAAATGTTATACCCATTATTGAGGATGCCAGACATCCAGCTAAATATCGTATGCTTGTTGGCATGGTTGATGTGATATTTTCTGATGTTGCACAACCCGATCAGGCTAGGATTGTAGCATTGAATGCGTCGTATTTTCTCAAGGCTGGAGGTCACTTCGTTATCTCAATTAAGGCCAATTGCATTGATTCAACCTCGCCTGCGGAAGCAGTGTTCCAACAGGAGGTGAAGAGGCTGCAGGCAGATCAGTTTAAGCCTATGGAACAAGTCACTCTTGAACCTTTTGAGCGCGACCATGCTTGTGTTGTTGGTGGCTATCGTGTACCGAAGAAGTCAAAAACTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000494 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0006139 GO:0006325 GO:0006364 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008213 GO:0008276 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0015030 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0016569 GO:0016570 GO:0016571 GO:0016592 GO:0016604 GO:0016740 GO:0016741 GO:0016787 GO:0016788 GO:0018364 GO:0019538 GO:0022613 GO:0030515 GO:0030684 GO:0031123 GO:0031126 GO:0031167 GO:0031428 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0033967 GO:0034470 GO:0034641 GO:0034660 GO:0034963 GO:0036009 GO:0036211 GO:0042054 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1901564 GO:1990258 GO:1990259 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fibrillarin

Protein Analysis

315

Amino Acids

33.18

Weight (kDa)

10.21

Isoelectric Point (pI)

28.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25630 AT5G52470
malus_domestica	MD01G1206000.v1.1 MD07G1276800.v1.1
prunus_persica	Prupe.8G059700_v2.0.a1 Prupe.8G117100_v2.0.a1
pyrus_communis	pycom01g21570 pycom07g25170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	12
Acc36I	ACCTGC	1 cut(s)	75
AccB1I	GGYRCC	3 cut(s)	4, 304, 485
AccI	GTMKAC	1 cut(s)	321
AccII	CGCG	1 cut(s)	885
AciI	CCGC	5 cut(s)	30, 36, 108, 144, 797
AcsI	RAATTY	1 cut(s)	378
AfaI	GTAC	1 cut(s)	918
AfiI	CCNNNNNNNGG	2 cut(s)	14, 817
AgsI	TTSAA	4 cut(s)	371, 718, 786, 872
AjiI	CACGTC	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	448
AleI	CACNNNNGTG	2 cut(s)	491, 558
AloI	GAACNNNNNNTCC	2 cut(s)	791, 823
AluBI	AGCT	3 cut(s)	317, 413, 635
AluI	AGCT	3 cut(s)	317, 413, 635
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	2 cut(s)	501, 561
Ama87I	CYCGRG	2 cut(s)	12, 308
AoxI	GGCC	4 cut(s)	169, 184, 517, 768
ApeKI	GCWGC	5 cut(s)	407, 410, 476, 829, 938
ApoI	RAATTY	1 cut(s)	378
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	2 cut(s)	594, 885
AspS9I	GGNCC	1 cut(s)	518
AsuC2I	CCSGG	2 cut(s)	309, 310
AsuHPI	GGTGA	4 cut(s)	65, 122, 170, 832
AvaI	CYCGRG	2 cut(s)	12, 308
BaeGI	GKGCMC	1 cut(s)	309
BanI	GGYRCC	3 cut(s)	4, 304, 485
BauI	CACGAG	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	5 cut(s)	394, 422, 463, 816, 925
BccI	CCATC	2 cut(s)	50, 350
BceAI	ACGGC	3 cut(s)	123, 156, 171
BciT130I	CCWGG	1 cut(s)	450
BcnI	CCSGG	2 cut(s)	309, 310
BcoDI	GTCTC	2 cut(s)	501, 561
BfaI	CTAG	1 cut(s)	702
BfmI	CTRYAG	2 cut(s)	408, 830
BfuAI	ACCTGC	1 cut(s)	75
BglI	GCCNNNNNGGC	1 cut(s)	244
BisI	GCNGC	5 cut(s)	408, 411, 477, 830, 939
BlsI	GCNGC	5 cut(s)	409, 412, 478, 831, 940
Bme1390I	CCNGG	3 cut(s)	309, 310, 450
BmeT110I	CYCGRG	2 cut(s)	12, 308
BmgBI	CACGTC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	518
BmiI	GGNNCC	4 cut(s)	6, 306, 386, 487
BmrFI	CCNGG	3 cut(s)	309, 310, 450
BmsI	GCATC	2 cut(s)	271, 610
BpmI	CTGGAG	2 cut(s)	546, 762
BpuEI	CTTGAG	1 cut(s)	719
BpuMI	CCSGG	2 cut(s)	309, 310
BsaJI	CCNNGG	7 cut(s)	139, 172, 187, 267, 308, 309, 469
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 817
Bse1I	ACTGG	1 cut(s)	529
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	7 cut(s)	139, 172, 187, 267, 308, 309, 469
BseGI	GGATG	3 cut(s)	361, 625, 628
BseLI	CCNNNNNNNGG	2 cut(s)	14, 817
BseMI	GCAATG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	2 cut(s)	90, 93
BseSI	GKGCMC	1 cut(s)	309
BseXI	GCAGC	5 cut(s)	394, 422, 463, 816, 925
Bsh1236I	CGCG	1 cut(s)	885
BshFI	GGCC	4 cut(s)	171, 186, 519, 770
BshNI	GGYRCC	3 cut(s)	4, 304, 485
BsiHKAI	GWGCWC	1 cut(s)	457
BsiHKCI	CYCGRG	2 cut(s)	12, 308
BsiSI	CCGG	1 cut(s)	309
BslI	CCNNNNNNNGG	2 cut(s)	14, 817
BsmAI	GTCTC	2 cut(s)	501, 561
BsmI	GAATGC	1 cut(s)	724
BsnI	GGCC	4 cut(s)	171, 186, 519, 770
BsoBI	CYCGRG	2 cut(s)	12, 308
Bsp1286I	GDGCHC	2 cut(s)	309, 457
Bsp143I	GATC	3 cut(s)	160, 694, 838
BspACI	CCGC	5 cut(s)	30, 36, 108, 144, 797
BspANI	GGCC	4 cut(s)	171, 186, 519, 770
BspFNI	CGCG	1 cut(s)	885
BspLI	GGNNCC	4 cut(s)	6, 306, 386, 487
BspMAI	CTGCAG	2 cut(s)	412, 834
BspMI	ACCTGC	1 cut(s)	75
BspT107I	GGYRCC	3 cut(s)	4, 304, 485
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	529
BssECI	CCNNGG	7 cut(s)	139, 172, 187, 267, 308, 309, 469
BssMI	GATC	3 cut(s)	160, 694, 838
BssSI	CACGAG	1 cut(s)	456
BssT1I	CCWWGG	2 cut(s)	267, 469
Bst2BI	CACGAG	1 cut(s)	456
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	493
Bst6I	CTCTTC	5 cut(s)	67, 97, 175, 326, 818
BstAPI	GCANNNNNTGC	1 cut(s)	719
BstC8I	GCNNGC	2 cut(s)	795, 834
BstDEI	CTNAG	2 cut(s)	399, 942
BstDSI	CCRYGG	3 cut(s)	139, 172, 187
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	3 cut(s)	361, 625, 628
BstFNI	CGCG	1 cut(s)	885
BstHHI	GCGC	2 cut(s)	594, 885
BstKTI	GATC	3 cut(s)	163, 697, 841
BstMAI	GTCTC	2 cut(s)	501, 561
BstMBI	GATC	3 cut(s)	160, 694, 838
BstMWI	GCNNNNNNNGC	2 cut(s)	244, 719
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	3 cut(s)	307, 308, 448
BstSFI	CTRYAG	2 cut(s)	408, 830
BstSLI	GKGCMC	1 cut(s)	309
BstUI	CGCG	1 cut(s)	885
BstV1I	GCAGC	5 cut(s)	394, 422, 463, 816, 925
BstXI	CCANNNNNNTGG	1 cut(s)	301
BsuRI	GGCC	4 cut(s)	171, 186, 519, 770
BtgI	CCRYGG	3 cut(s)	139, 172, 187
BtrI	CACGTC	1 cut(s)	152
BtsCI	GGATG	3 cut(s)	361, 625, 628
BtsI	GCAGTG	2 cut(s)	546, 810
BtsIMutI	CAGTG	3 cut(s)	498, 546, 810
BveI	ACCTGC	1 cut(s)	75
Cac8I	GCNNGC	2 cut(s)	795, 834
CfoI	GCGC	2 cut(s)	594, 885
Cfr13I	GGNCC	1 cut(s)	518
Cfr9I	CCCGGG	1 cut(s)	308
CseI	GACGC	1 cut(s)	711
CsiI	ACCWGGT	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	917
CviAII	CATG	5 cut(s)	248, 500, 580, 658, 890
CviQI	GTAC	1 cut(s)	917
DdeI	CTNAG	2 cut(s)	399, 942
DpnI	GATC	3 cut(s)	162, 696, 840
DpnII	GATC	3 cut(s)	160, 694, 838
DraI	TTTAAA	1 cut(s)	133
Eam1104I	CTCTTC	5 cut(s)	67, 97, 175, 326, 818
EarI	CTCTTC	5 cut(s)	67, 97, 175, 326, 818
EciI	GGCGGA	2 cut(s)	51, 159
Eco130I	CCWWGG	2 cut(s)	267, 469
Eco32I	GATATC	1 cut(s)	339
Eco88I	CYCGRG	2 cut(s)	12, 308
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	448
EcoRV	GATATC	1 cut(s)	339
EcoT14I	CCWWGG	2 cut(s)	267, 469
ErhI	CCWWGG	2 cut(s)	267, 469
FaeI	CATG	5 cut(s)	251, 503, 583, 661, 893
FalI	AAGNNNNNCTT	4 cut(s)	270, 302, 852, 884
FatI	CATG	5 cut(s)	247, 499, 579, 657, 889
FauNDI	CATATG	1 cut(s)	437
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	5 cut(s)	408, 411, 477, 830, 939
FokI	GGATG	3 cut(s)	368, 615, 632
Fsp4HI	GCNGC	5 cut(s)	408, 411, 477, 830, 939
FspBI	CTAG	1 cut(s)	702
GlaI	GCGC	2 cut(s)	593, 884
GluI	GCNGC	5 cut(s)	408, 411, 477, 830, 939
GsuI	CTGGAG	2 cut(s)	546, 762
HaeIII	GGCC	4 cut(s)	171, 186, 519, 770
HapII	CCGG	1 cut(s)	309
HgaI	GACGC	1 cut(s)	711
HhaI	GCGC	2 cut(s)	594, 885
Hin1II	CATG	5 cut(s)	251, 503, 583, 661, 893
Hin6I	GCGC	2 cut(s)	592, 883
HinP1I	GCGC	2 cut(s)	592, 883
HinfI	GANTC	2 cut(s)	39, 782
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	4 cut(s)	65, 122, 170, 832
Hpy166II	GTNNAC	3 cut(s)	322, 577, 917
Hpy188I	TCNGA	3 cut(s)	348, 508, 679
Hpy188III	TCNNGA	1 cut(s)	869
Hpy8I	GTNNAC	3 cut(s)	322, 577, 917
Hpy99I	CGWCG	1 cut(s)	727
HpyAV	CCTTC	3 cut(s)	192, 205, 245
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	5 cut(s)	410, 539, 686, 777, 832
HpyF10VI	GCNNNNNNNGC	2 cut(s)	244, 719
HpyF3I	CTNAG	2 cut(s)	399, 942
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	5 cut(s)	251, 503, 583, 661, 893
HspAI	GCGC	2 cut(s)	592, 883
Kzo9I	GATC	3 cut(s)	160, 694, 838
Lsp1109I	GCAGC	5 cut(s)	394, 422, 463, 816, 925
LweI	GCATC	2 cut(s)	271, 610
MabI	ACCWGGT	1 cut(s)	448
MaeI	CTAG	1 cut(s)	702
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	4 cut(s)	110, 289, 746, 862
MalI	GATC	3 cut(s)	162, 696, 840
MboI	GATC	3 cut(s)	160, 694, 838
MboII	GAAGA	7 cut(s)	84, 114, 192, 290, 343, 835, 934
MfeI	CAATTG	1 cut(s)	772
MhlI	GDGCHC	2 cut(s)	309, 457
MluCI	AATT	3 cut(s)	378, 762, 772
MmeI	TCCRAC	1 cut(s)	835
MroXI	GAANNNNTTC	1 cut(s)	389
MseI	TTAA	4 cut(s)	132, 444, 765, 846
MslI	CAYNNNNRTG	4 cut(s)	246, 491, 558, 894
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	3 cut(s)	309, 310, 450
MunI	CAATTG	1 cut(s)	772
Mva1269I	GAATGC	1 cut(s)	724
MvaI	CCWGG	1 cut(s)	450
MvnI	CGCG	1 cut(s)	885
MwoI	GCNNNNNNNGC	2 cut(s)	244, 719
NciI	CCSGG	2 cut(s)	309, 310
NdeI	CATATG	1 cut(s)	437
NdeII	GATC	3 cut(s)	160, 694, 838
NlaIII	CATG	5 cut(s)	251, 503, 583, 661, 893
NlaIV	GGNNCC	4 cut(s)	6, 306, 386, 487
NmuCI	GTSAC	3 cut(s)	110, 746, 862
OliI	CACNNNNGTG	2 cut(s)	491, 558
PaeR7I	CTCGAG	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	1 cut(s)	169
PctI	GAATGC	1 cut(s)	724
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	2 cut(s)	39, 782
PkrI	GCNGC	5 cut(s)	409, 412, 478, 831, 940
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	4 cut(s)	6, 306, 386, 487
PspPI	GGNCC	1 cut(s)	518
PspXI	VCTCGAGB	1 cut(s)	12
PstI	CTGCAG	2 cut(s)	412, 834
RsaI	GTAC	1 cut(s)	918
RsaNI	GTAC	1 cut(s)	917
RseI	CAYNNNNRTG	4 cut(s)	246, 491, 558, 894
SaqAI	TTAA	4 cut(s)	132, 444, 765, 846
SatI	GCNGC	5 cut(s)	408, 411, 477, 830, 939
Sau3AI	GATC	3 cut(s)	160, 694, 838
Sau96I	GGNCC	1 cut(s)	518
ScrFI	CCNGG	3 cut(s)	309, 310, 450
SduI	GDGCHC	2 cut(s)	309, 457
SexAI	ACCWGGT	1 cut(s)	448
SfaNI	GCATC	2 cut(s)	271, 610
SfcI	CTRYAG	2 cut(s)	408, 830
Sfr274I	CTCGAG	1 cut(s)	12
SlaI	CTCGAG	1 cut(s)	12
SmaI	CCCGGG	1 cut(s)	310
SmiMI	CAYNNNNRTG	4 cut(s)	246, 491, 558, 894
SmlI	CTYRAG	2 cut(s)	12, 734
SmoI	CTYRAG	2 cut(s)	12, 734
Sse9I	AATT	3 cut(s)	378, 762, 772
SsiI	CCGC	5 cut(s)	30, 36, 108, 144, 797
SspMI	CTAG	1 cut(s)	702
StyD4I	CCNGG	3 cut(s)	307, 308, 448
StyI	CCWWGG	2 cut(s)	267, 469
TaaI	ACNGT	1 cut(s)	493
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	2 cut(s)	13, 234
TasI	AATT	3 cut(s)	378, 762, 772
TfiI	GAWTC	2 cut(s)	39, 782
Tru1I	TTAA	4 cut(s)	132, 444, 765, 846
Tru9I	TTAA	4 cut(s)	132, 444, 765, 846
TscAI	CASTG	3 cut(s)	498, 546, 810
TseFI	GTSAC	3 cut(s)	110, 746, 862
TseI	GCWGC	5 cut(s)	407, 410, 476, 829, 938
Tsp45I	GTSAC	3 cut(s)	110, 746, 862
TspDTI	ATGAA	3 cut(s)	224, 250, 264
TspGWI	ACGGA	1 cut(s)	383
TspMI	CCCGGG	1 cut(s)	308
TspRI	CASTG	3 cut(s)	498, 546, 810
XagI	CCTNNNNNAGG	1 cut(s)	12
XapI	RAATTY	1 cut(s)	378
XhoI	CTCGAG	1 cut(s)	12
XmaI	CCCGGG	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.