Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0019136

Physical Location & Seq

Genomic Coordinates Forward (+)

34227720 .. 34230708

Gene Structure 2989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1276800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCTCCTCCTCGAGGTCGTGGTGGTAGTGGTGGATTCAGGGGCGGTAGGGGTGACAGAGGTGGAAGAAGTGGGGGTAGGTCTGGTGGTGGTAGAGGGTTTGACAGAGGTGGTAGTGGCTTTAAATCCCGTGGGCGTAGTGATCGCGGACGTGGTGATCGCGGAAGAGGCCGTGGGAGAGGAGGAATGAAGGGTGGTAACAAAGTGGTGGTTGAGCCTCACAGACATGAAGGTGTTTTCATTGGTAAGGGTAAAGAAGATGCTCTTGTTACCAAGAATCTTGTTCCCGGTGAAGCTGTCTACAATGAGAAGAGGATTTCTGTTCAGAATGAGGATGGAACAAAAGTTGAGTATAGGATTTGGAACCCTTTCCGTTCCAAGTTGGCTGCAGCCATTCTTGGTGGTGTTGATAATATATGGATTAAACCTGGTGCTAAAGTTCTCTACCTCGGGGCTGCTTCTGGAACTACAGTCTCTCATGTGTCTGACATTGTTGGCCCTACTGGAGTTGTCTATGCAGTTGAGTTCTCTCATAGAAGTGGCAGAGACTTGGTAAATATGGCTAAGAAGCGCACAAATGTCATACCCATTATTGAAGATGCTAGACATCCAGCTAAATATCGGATGCTTGTTGGCATGGTTGATGTGATATTCTCTGATGTTGCACAACCTGATCAGGCTAGGATTGTTGCATTGAATGCATCATATTTTCTGAAAGCTGGAGGCCACTTCGTTATCTCAATCAAGGCCAATTGCATTGATTCAACATCACCCGCGGAAGCAGTGTTCCAATCAGAGGTCAAGAAGCTTCAGGAAGAGCAGTTCAAGCCTGCGGAACAAGTCACTCTTGAACCTTTTGAGCGCGACCATGCTTGCGTGGTTGGTGGCTATCGTATGCCAAAGAAGTCGAAAGCTGGCAACGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000494 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0006139 GO:0006325 GO:0006364 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008213 GO:0008276 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0015030 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0016569 GO:0016570 GO:0016571 GO:0016592 GO:0016604 GO:0016740 GO:0016741 GO:0016787 GO:0016788 GO:0018364 GO:0019538 GO:0022613 GO:0030515 GO:0030684 GO:0031123 GO:0031126 GO:0031167 GO:0031428 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0033967 GO:0034470 GO:0034641 GO:0034660 GO:0034963 GO:0036009 GO:0036211 GO:0042054 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1901564 GO:1990258 GO:1990259 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fibrillarin

Protein Analysis

309

Amino Acids

33.0

Weight (kDa)

10.14

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fibrillarin	PF01269	71 - 298	1.4e-110	Fibrillarin
GCD14	PF08704	138 - 276	7e-06	tRNA methyltransferase complex GCD14 subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25630 AT5G52470
malus_domestica	MD01G1206000.v1.1 MD07G1276800.v1.1
prunus_persica	Prupe.8G059700_v2.0.a1 Prupe.8G117100_v2.0.a1
pyrus_communis	pycom01g21570 pycom07g25170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	12
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	4 cut(s)	147, 162, 776, 864
AciI	CCGC	6 cut(s)	45, 147, 162, 774, 776, 833
AcuI	CTGAAG	1 cut(s)	794
AfiI	CCNNNNNNNGG	2 cut(s)	14, 796
AgsI	TTSAA	5 cut(s)	596, 697, 765, 826, 851
AjiI	CACGTC	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	427
AloI	GAACNNNNNNTCC	4 cut(s)	770, 802, 806, 838
AluBI	AGCT	5 cut(s)	296, 614, 719, 808, 914
AluI	AGCT	5 cut(s)	296, 614, 719, 808, 914
Alw26I	GTCTC	2 cut(s)	478, 540
Ama87I	CYCGRG	2 cut(s)	12, 449
AoxI	GGCC	4 cut(s)	169, 496, 724, 747
ApeKI	GCWGC	3 cut(s)	386, 389, 455
Asp700I	GAANNNNTTC	1 cut(s)	368
AspLEI	GCGC	2 cut(s)	573, 864
AspS9I	GGNCC	1 cut(s)	497
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	4 cut(s)	65, 167, 302, 762
AvaI	CYCGRG	2 cut(s)	12, 449
BbvI	GCAGC	3 cut(s)	373, 401, 442
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	1 cut(s)	156
BciT130I	CCWGG	1 cut(s)	429
BclI	TGATCA	1 cut(s)	673
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	2 cut(s)	478, 540
BfaI	CTAG	3 cut(s)	603, 681, 925
BfmI	CTRYAG	2 cut(s)	387, 468
BisI	GCNGC	3 cut(s)	387, 390, 456
BlsI	GCNGC	3 cut(s)	388, 391, 457
Bme1390I	CCNGG	2 cut(s)	288, 429
BmeT110I	CYCGRG	2 cut(s)	12, 449
BmgBI	CACGTC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	2 cut(s)	6, 365
BmrFI	CCNGG	2 cut(s)	288, 429
BmsI	GCATC	4 cut(s)	250, 589, 615, 710
BpmI	CTGGAG	2 cut(s)	525, 741
BpuMI	CCSGG	1 cut(s)	288
BsaJI	CCNNGG	4 cut(s)	130, 172, 448, 774
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 796
Bse1I	ACTGG	1 cut(s)	508
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	4 cut(s)	130, 172, 448, 774
BseGI	GGATG	3 cut(s)	340, 607, 630
BseLI	CCNNNNNNNGG	2 cut(s)	14, 796
BseNI	ACTGG	1 cut(s)	508
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	3 cut(s)	373, 401, 442
Bsh1236I	CGCG	4 cut(s)	147, 162, 776, 864
BshFI	GGCC	4 cut(s)	171, 498, 726, 749
BsiHKCI	CYCGRG	2 cut(s)	12, 449
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	14, 796
BsmAI	GTCTC	2 cut(s)	478, 540
BsmI	GAATGC	1 cut(s)	703
BsnI	GGCC	4 cut(s)	171, 498, 726, 749
BsoBI	CYCGRG	2 cut(s)	12, 449
Bsp143I	GATC	3 cut(s)	142, 157, 673
BspACI	CCGC	6 cut(s)	45, 147, 162, 774, 776, 833
BspANI	GGCC	4 cut(s)	171, 498, 726, 749
BspFNI	CGCG	4 cut(s)	147, 162, 776, 864
BspLI	GGNNCC	2 cut(s)	6, 365
BspMAI	CTGCAG	1 cut(s)	391
BspQI	GCTCTTC	1 cut(s)	810
BsrI	ACTGG	1 cut(s)	508
BssECI	CCNNGG	4 cut(s)	130, 172, 448, 774
BssMI	GATC	3 cut(s)	142, 157, 673
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	472
Bst6I	CTCTTC	3 cut(s)	160, 305, 810
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstC8I	GCNNGC	3 cut(s)	831, 874, 916
BstDEI	CTNAG	1 cut(s)	564
BstDSI	CCRYGG	3 cut(s)	130, 172, 774
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	3 cut(s)	340, 607, 630
BstFNI	CGCG	4 cut(s)	147, 162, 776, 864
BstHHI	GCGC	2 cut(s)	573, 864
BstKTI	GATC	3 cut(s)	145, 160, 676
BstMAI	GTCTC	2 cut(s)	478, 540
BstMBI	GATC	3 cut(s)	142, 157, 673
BstMWI	GCNNNNNNNGC	4 cut(s)	168, 698, 826, 920
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	2 cut(s)	286, 427
BstSFI	CTRYAG	2 cut(s)	387, 468
BstUI	CGCG	4 cut(s)	147, 162, 776, 864
BstV1I	GCAGC	3 cut(s)	373, 401, 442
BsuRI	GGCC	4 cut(s)	171, 498, 726, 749
BtgI	CCRYGG	3 cut(s)	130, 172, 774
BtrI	CACGTC	1 cut(s)	152
BtsCI	GGATG	3 cut(s)	340, 607, 630
BtsI	GCAGTG	1 cut(s)	789
BtsIMutI	CAGTG	1 cut(s)	789
Cac8I	GCNNGC	3 cut(s)	831, 874, 916
CfoI	GCGC	2 cut(s)	573, 864
Cfr13I	GGNCC	1 cut(s)	497
Cfr42I	CCGCGG	1 cut(s)	777
CsiI	ACCWGGT	1 cut(s)	427
CviAII	CATG	4 cut(s)	227, 479, 637, 869
DdeI	CTNAG	1 cut(s)	564
DpnI	GATC	3 cut(s)	144, 159, 675
DpnII	GATC	3 cut(s)	142, 157, 673
DraI	TTTAAA	1 cut(s)	124
Eam1104I	CTCTTC	3 cut(s)	160, 305, 810
EarI	CTCTTC	3 cut(s)	160, 305, 810
Eco57I	CTGAAG	1 cut(s)	794
Eco88I	CYCGRG	2 cut(s)	12, 449
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	427
EcoT22I	ATGCAT	1 cut(s)	703
FaeI	CATG	4 cut(s)	230, 482, 640, 872
FalI	AAGNNNNNCTT	4 cut(s)	249, 281, 831, 863
FatI	CATG	4 cut(s)	226, 478, 636, 868
FauI	CCCGC	1 cut(s)	781
FbaI	TGATCA	1 cut(s)	673
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	3 cut(s)	387, 390, 456
FokI	GGATG	3 cut(s)	347, 594, 637
Fsp4HI	GCNGC	3 cut(s)	387, 390, 456
FspBI	CTAG	3 cut(s)	603, 681, 925
GlaI	GCGC	2 cut(s)	572, 863
GluI	GCNGC	3 cut(s)	387, 390, 456
GsuI	CTGGAG	2 cut(s)	525, 741
HaeIII	GGCC	4 cut(s)	171, 498, 726, 749
HapII	CCGG	1 cut(s)	288
HhaI	GCGC	2 cut(s)	573, 864
Hin1II	CATG	4 cut(s)	230, 482, 640, 872
Hin6I	GCGC	2 cut(s)	571, 862
HinP1I	GCGC	2 cut(s)	571, 862
HindIII	AAGCTT	1 cut(s)	806
HinfI	GANTC	3 cut(s)	36, 277, 761
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	4 cut(s)	65, 167, 302, 762
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	6 cut(s)	327, 487, 624, 658, 714, 796
Hpy188III	TCNNGA	4 cut(s)	462, 802, 812, 848
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	2 cut(s)	184, 224
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	6 cut(s)	389, 518, 665, 692, 701, 756
HpyF10VI	GCNNNNNNNGC	4 cut(s)	168, 698, 826, 920
HpyF3I	CTNAG	1 cut(s)	564
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	4 cut(s)	230, 482, 640, 872
HspAI	GCGC	2 cut(s)	571, 862
Ksp22I	TGATCA	1 cut(s)	673
KspI	CCGCGG	1 cut(s)	777
Kzo9I	GATC	3 cut(s)	142, 157, 673
LguI	GCTCTTC	1 cut(s)	810
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	3 cut(s)	373, 401, 442
LweI	GCATC	4 cut(s)	250, 589, 615, 710
MabI	ACCWGGT	1 cut(s)	427
MaeI	CTAG	3 cut(s)	603, 681, 925
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	4 cut(s)	53, 197, 268, 841
MalI	GATC	3 cut(s)	144, 159, 675
MboI	GATC	3 cut(s)	142, 157, 673
MboII	GAAGA	6 cut(s)	78, 177, 269, 322, 608, 827
MfeI	CAATTG	1 cut(s)	751
MluCI	AATT	1 cut(s)	751
Mph1103I	ATGCAT	1 cut(s)	703
MroXI	GAANNNNTTC	1 cut(s)	368
MseI	TTAA	2 cut(s)	123, 423
MslI	CAYNNNNRTG	3 cut(s)	225, 231, 537
MspA1I	CMGCKG	1 cut(s)	776
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	2 cut(s)	288, 429
MunI	CAATTG	1 cut(s)	751
Mva1269I	GAATGC	1 cut(s)	703
MvaI	CCWGG	1 cut(s)	429
MvnI	CGCG	4 cut(s)	147, 162, 776, 864
MwoI	GCNNNNNNNGC	4 cut(s)	168, 698, 826, 920
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	3 cut(s)	142, 157, 673
NlaIII	CATG	4 cut(s)	230, 482, 640, 872
NlaIV	GGNNCC	2 cut(s)	6, 365
NmuCI	GTSAC	2 cut(s)	53, 841
NsiI	ATGCAT	1 cut(s)	703
PaeR7I	CTCGAG	1 cut(s)	12
PciSI	GCTCTTC	1 cut(s)	810
PctI	GAATGC	1 cut(s)	703
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	3 cut(s)	36, 277, 761
PkrI	GCNGC	3 cut(s)	388, 391, 457
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	2 cut(s)	6, 365
PspPI	GGNCC	1 cut(s)	497
PspXI	VCTCGAGB	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	391
RseI	CAYNNNNRTG	3 cut(s)	225, 231, 537
SacII	CCGCGG	1 cut(s)	777
SapI	GCTCTTC	1 cut(s)	810
SaqAI	TTAA	2 cut(s)	123, 423
SatI	GCNGC	3 cut(s)	387, 390, 456
Sau3AI	GATC	3 cut(s)	142, 157, 673
Sau96I	GGNCC	1 cut(s)	497
ScrFI	CCNGG	2 cut(s)	288, 429
SexAI	ACCWGGT	1 cut(s)	427
SfaNI	GCATC	4 cut(s)	250, 589, 615, 710
SfcI	CTRYAG	2 cut(s)	387, 468
Sfr274I	CTCGAG	1 cut(s)	12
Sfr303I	CCGCGG	1 cut(s)	777
SgrBI	CCGCGG	1 cut(s)	777
SlaI	CTCGAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	3 cut(s)	225, 231, 537
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	1 cut(s)	751
SsiI	CCGC	6 cut(s)	45, 147, 162, 774, 776, 833
SspMI	CTAG	3 cut(s)	603, 681, 925
StyD4I	CCNGG	2 cut(s)	286, 427
TaaI	ACNGT	1 cut(s)	472
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	2 cut(s)	13, 908
TasI	AATT	1 cut(s)	751
TfiI	GAWTC	3 cut(s)	36, 277, 761
Tru1I	TTAA	2 cut(s)	123, 423
Tru9I	TTAA	2 cut(s)	123, 423
TscAI	CASTG	1 cut(s)	789
TseFI	GTSAC	2 cut(s)	53, 841
TseI	GCWGC	3 cut(s)	386, 389, 455
Tsp45I	GTSAC	2 cut(s)	53, 841
TspDTI	ATGAA	3 cut(s)	203, 229, 243
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	1 cut(s)	789
XagI	CCTNNNNNAGG	1 cut(s)	12
XhoI	CTCGAG	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	3 cut(s)	603, 681, 925
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.