Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0019136

Physical Location & Seq

Genomic Coordinates Forward (+)

30156989 .. 30160073

Gene Structure 3085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1206000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCTCCTCCTCGAGGTCGTGGCGGTAGTGGAGGATTCAGGGGTGGCAGAGGTGACAGAGGTGGAAGAAGTGGAGGTAGGTCTGGTGGTGGTGGGGGTAGAGGCTTTGACAGAGGTGGTAGTGGCTTTAAGCCCCGTGGTGGACGTAGTGATCGCGGAGGCGGTCGTGGAAGAGGACGTGGCGGGAGAGGTGGAATGAAGGGTGGTAACAAAGTTGTGGTTGAGCCTCACAGGCATGAAGGTGTTTTCATTGGTAAGGGTAAGGAAGATGCTCTTGTTACCAAGAATCTTGTTCCCGGTGAAGCTGTCTACAATGAGAAGAGGATTTCTGTTCAGAATGAGGATGGAACAAAGGTTGAATATAGAATTTGGAACCCTTTCCGTTCCAAGTTGGCTGCAGCCATTCTCGGTGGCGTTGATAATATATGGATTAAACCTGGTGCTAAAGTTCTCTACCTCGGGGCTGCTTCTGGTACAACAGTCTCTCATGTGTCTGACATTGTTGGCCCTACTGGAGTTGTCTATGCTGTTGAGTTCTCTCATAGAAGTGGCAGAGACTTGGTAAATATGGCGAAGAAGCGCACAAATGTCATACCCATTATTGAAGATGCCAGGCATCCAGCTAAATACCGTATGCTTGTTGGCATGGTTGATGTGATATTCTCTGATGTTGCACAACCTGATCAGGCTAGGATTGTAGCATTGAATGCATCATATTTTCTGAAAGCTGGAGGCCACTTCGTTATCTCAATCAAGGCCAACTGCATTGATTCAACATCACCCGCGGAAGCAGTGTTCCAATCAGAGGTCAAGAAGCTTCAGGCAGAGCAGTTTAAGCCAGCAGAACAAGTCACACTTGAACCTTTTGAGCGCGACCATGCTTGTGTGGTTGGAGGCTATCGTATGCCAAAGAAGTCGAAAGCTGGTGACGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000494 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0006139 GO:0006325 GO:0006364 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008213 GO:0008276 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0015030 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0016569 GO:0016570 GO:0016571 GO:0016592 GO:0016604 GO:0016740 GO:0016741 GO:0016787 GO:0016788 GO:0018364 GO:0019538 GO:0022613 GO:0030515 GO:0030684 GO:0031123 GO:0031126 GO:0031167 GO:0031428 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0033967 GO:0034470 GO:0034641 GO:0034660 GO:0034963 GO:0036009 GO:0036211 GO:0042054 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1901564 GO:1990258 GO:1990259 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fibrillarin

Protein Analysis

312

Amino Acids

32.97

Weight (kDa)

10.14

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fibrillarin	PF01269	74 - 301	3.9e-110	Fibrillarin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25630 AT5G52470
malus_domestica	MD01G1206000.v1.1 MD07G1276800.v1.1
prunus_persica	Prupe.8G059700_v2.0.a1 Prupe.8G117100_v2.0.a1
pyrus_communis	pycom01g21570 pycom07g25170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	12
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	3 cut(s)	156, 785, 873
AciI	CCGC	6 cut(s)	24, 156, 162, 183, 783, 785
AcsI	RAATTY	1 cut(s)	366
AcuI	CTGAAG	1 cut(s)	803
AcyI	GRCGYC	1 cut(s)	930
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	3 cut(s)	14, 140, 805
AgsI	TTSAA	5 cut(s)	359, 605, 706, 774, 860
AjiI	CACGTC	1 cut(s)	179
AjnI	CCWGG	2 cut(s)	436, 611
AloI	GAACNNNNNNTCC	2 cut(s)	779, 811
AluBI	AGCT	5 cut(s)	305, 623, 728, 817, 923
AluI	AGCT	5 cut(s)	305, 623, 728, 817, 923
Alw26I	GTCTC	2 cut(s)	487, 549
Ama87I	CYCGRG	2 cut(s)	12, 458
AoxI	GGCC	3 cut(s)	505, 733, 756
ApeKI	GCWGC	3 cut(s)	395, 398, 464
ApoI	RAATTY	1 cut(s)	366
Asp700I	GAANNNNTTC	1 cut(s)	377
AspLEI	GCGC	2 cut(s)	582, 873
AspS9I	GGNCC	1 cut(s)	506
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	3 cut(s)	65, 311, 771
AvaI	CYCGRG	2 cut(s)	12, 458
BaeI	ACNNNNGTAYC	2 cut(s)	465, 498
BbvI	GCAGC	3 cut(s)	382, 410, 451
BccI	CCATC	1 cut(s)	338
BciT130I	CCWGG	2 cut(s)	438, 613
BclI	TGATCA	1 cut(s)	682
BcnI	CCSGG	1 cut(s)	297
BcoDI	GTCTC	2 cut(s)	487, 549
BfaI	CTAG	2 cut(s)	690, 934
BfmI	CTRYAG	1 cut(s)	396
BglI	GCCNNNNNGGC	1 cut(s)	232
BisI	GCNGC	3 cut(s)	396, 399, 465
BlsI	GCNGC	3 cut(s)	397, 400, 466
Bme1390I	CCNGG	3 cut(s)	297, 438, 613
BmeT110I	CYCGRG	2 cut(s)	12, 458
BmgBI	CACGTC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	2 cut(s)	6, 374
BmrFI	CCNGG	3 cut(s)	297, 438, 613
BmsI	GCATC	4 cut(s)	259, 598, 625, 719
BpmI	CTGGAG	2 cut(s)	534, 750
BpuMI	CCSGG	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	930
BsaJI	CCNNGG	3 cut(s)	136, 457, 783
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 140, 805
Bse1I	ACTGG	1 cut(s)	517
BseBI	CCWGG	2 cut(s)	438, 613
BseDI	CCNNGG	3 cut(s)	136, 457, 783
BseGI	GGATG	2 cut(s)	349, 616
BseLI	CCNNNNNNNGG	3 cut(s)	14, 140, 805
BseNI	ACTGG	1 cut(s)	517
BseXI	GCAGC	3 cut(s)	382, 410, 451
Bsh1236I	CGCG	3 cut(s)	156, 785, 873
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	3 cut(s)	507, 735, 758
BsiEI	CGRYCG	1 cut(s)	166
BsiHKCI	CYCGRG	2 cut(s)	12, 458
BsiSI	CCGG	1 cut(s)	297
BslI	CCNNNNNNNGG	3 cut(s)	14, 140, 805
BsmAI	GTCTC	2 cut(s)	487, 549
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	3 cut(s)	507, 735, 758
BsoBI	CYCGRG	2 cut(s)	12, 458
Bsp143I	GATC	2 cut(s)	151, 682
BspACI	CCGC	6 cut(s)	24, 156, 162, 183, 783, 785
BspANI	GGCC	3 cut(s)	507, 735, 758
BspFNI	CGCG	3 cut(s)	156, 785, 873
BspLI	GGNNCC	2 cut(s)	6, 374
BspMAI	CTGCAG	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	517
BssECI	CCNNGG	3 cut(s)	136, 457, 783
BssMI	GATC	2 cut(s)	151, 682
BssNI	GRCGYC	1 cut(s)	930
Bst2UI	CCWGG	2 cut(s)	438, 613
Bst4CI	ACNGT	2 cut(s)	481, 632
Bst6I	CTCTTC	2 cut(s)	166, 314
BstACI	GRCGYC	1 cut(s)	930
BstAPI	GCANNNNNTGC	1 cut(s)	707
BstC8I	GCNNGC	1 cut(s)	840
BstDSI	CCRYGG	2 cut(s)	136, 783
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	349, 616
BstFNI	CGCG	3 cut(s)	156, 785, 873
BstHHI	GCGC	2 cut(s)	582, 873
BstKTI	GATC	2 cut(s)	154, 685
BstMAI	GTCTC	2 cut(s)	487, 549
BstMBI	GATC	2 cut(s)	151, 682
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	4 cut(s)	232, 707, 835, 929
BstNI	CCWGG	2 cut(s)	438, 613
BstSCI	CCNGG	3 cut(s)	295, 436, 611
BstSFI	CTRYAG	1 cut(s)	396
BstUI	CGCG	3 cut(s)	156, 785, 873
BstV1I	GCAGC	3 cut(s)	382, 410, 451
BsuRI	GGCC	3 cut(s)	507, 735, 758
BtgI	CCRYGG	2 cut(s)	136, 783
BtrI	CACGTC	1 cut(s)	179
BtsCI	GGATG	2 cut(s)	349, 616
BtsI	GCAGTG	1 cut(s)	798
BtsIMutI	CAGTG	1 cut(s)	798
Cac8I	GCNNGC	1 cut(s)	840
CfoI	GCGC	2 cut(s)	582, 873
Cfr13I	GGNCC	1 cut(s)	506
Cfr42I	CCGCGG	1 cut(s)	786
CsiI	ACCWGGT	1 cut(s)	436
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	4 cut(s)	236, 488, 646, 878
CviQI	GTAC	1 cut(s)	474
DpnI	GATC	2 cut(s)	153, 684
DpnII	GATC	2 cut(s)	151, 682
Eam1104I	CTCTTC	2 cut(s)	166, 314
EarI	CTCTTC	2 cut(s)	166, 314
Eco57I	CTGAAG	1 cut(s)	803
Eco88I	CYCGRG	2 cut(s)	12, 458
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoRII	CCWGG	2 cut(s)	436, 611
EcoT22I	ATGCAT	1 cut(s)	712
FaeI	CATG	4 cut(s)	239, 491, 649, 881
FalI	AAGNNNNNCTT	4 cut(s)	258, 290, 840, 872
FatI	CATG	4 cut(s)	235, 487, 645, 877
FauI	CCCGC	2 cut(s)	176, 790
FbaI	TGATCA	1 cut(s)	682
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	3 cut(s)	396, 399, 465
FokI	GGATG	2 cut(s)	356, 603
Fsp4HI	GCNGC	3 cut(s)	396, 399, 465
FspBI	CTAG	2 cut(s)	690, 934
GlaI	GCGC	2 cut(s)	581, 872
GluI	GCNGC	3 cut(s)	396, 399, 465
GsuI	CTGGAG	2 cut(s)	534, 750
HaeIII	GGCC	3 cut(s)	507, 735, 758
HapII	CCGG	1 cut(s)	297
HhaI	GCGC	2 cut(s)	582, 873
Hin1I	GRCGYC	1 cut(s)	930
Hin1II	CATG	4 cut(s)	239, 491, 649, 881
Hin6I	GCGC	2 cut(s)	580, 871
HinP1I	GCGC	2 cut(s)	580, 871
HindIII	AAGCTT	1 cut(s)	815
HinfI	GANTC	3 cut(s)	36, 286, 770
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	3 cut(s)	65, 311, 771
Hpy166II	GTNNAC	2 cut(s)	143, 310
Hpy188I	TCNGA	5 cut(s)	336, 496, 667, 723, 805
Hpy188III	TCNNGA	1 cut(s)	811
Hpy8I	GTNNAC	2 cut(s)	143, 310
HpyAV	CCTTC	2 cut(s)	193, 233
HpyCH4III	ACNGT	2 cut(s)	481, 632
HpyCH4IV	ACGT	2 cut(s)	145, 178
HpyCH4V	TGCA	4 cut(s)	398, 674, 710, 765
HpyF10VI	GCNNNNNNNGC	4 cut(s)	232, 707, 835, 929
HpySE526I	ACGT	2 cut(s)	145, 178
Hsp92I	GRCGYC	1 cut(s)	930
Hsp92II	CATG	4 cut(s)	239, 491, 649, 881
HspAI	GCGC	2 cut(s)	580, 871
Ksp22I	TGATCA	1 cut(s)	682
KspI	CCGCGG	1 cut(s)	786
Kzo9I	GATC	2 cut(s)	151, 682
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	3 cut(s)	382, 410, 451
LweI	GCATC	4 cut(s)	259, 598, 625, 719
MabI	ACCWGGT	1 cut(s)	436
MaeI	CTAG	2 cut(s)	690, 934
MaeII	ACGT	2 cut(s)	145, 178
MaeIII	GTNAC	5 cut(s)	53, 206, 277, 850, 926
MalI	GATC	2 cut(s)	153, 684
MboI	GATC	2 cut(s)	151, 682
MboII	GAAGA	6 cut(s)	78, 183, 278, 331, 586, 617
MluCI	AATT	1 cut(s)	366
MmeI	TCCRAC	1 cut(s)	871
Mph1103I	ATGCAT	1 cut(s)	712
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	3 cut(s)	129, 432, 834
MslI	CAYNNNNRTG	4 cut(s)	234, 240, 546, 882
MspA1I	CMGCKG	1 cut(s)	785
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	3 cut(s)	297, 438, 613
Mva1269I	GAATGC	1 cut(s)	712
MvaI	CCWGG	2 cut(s)	438, 613
MvnI	CGCG	3 cut(s)	156, 785, 873
MwoI	GCNNNNNNNGC	4 cut(s)	232, 707, 835, 929
NciI	CCSGG	1 cut(s)	297
NdeII	GATC	2 cut(s)	151, 682
NlaIII	CATG	4 cut(s)	239, 491, 649, 881
NlaIV	GGNNCC	2 cut(s)	6, 374
NmuCI	GTSAC	3 cut(s)	53, 850, 926
NsiI	ATGCAT	1 cut(s)	712
PaeR7I	CTCGAG	1 cut(s)	12
PctI	GAATGC	1 cut(s)	712
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	3 cut(s)	36, 286, 770
PkrI	GCNGC	3 cut(s)	397, 400, 466
Psp6I	CCWGG	2 cut(s)	436, 611
PspGI	CCWGG	2 cut(s)	436, 611
PspN4I	GGNNCC	2 cut(s)	6, 374
PspPI	GGNCC	1 cut(s)	506
PspXI	VCTCGAGB	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	400
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
RseI	CAYNNNNRTG	4 cut(s)	234, 240, 546, 882
SacII	CCGCGG	1 cut(s)	786
SaqAI	TTAA	3 cut(s)	129, 432, 834
SatI	GCNGC	3 cut(s)	396, 399, 465
Sau3AI	GATC	2 cut(s)	151, 682
Sau96I	GGNCC	1 cut(s)	506
ScrFI	CCNGG	3 cut(s)	297, 438, 613
SexAI	ACCWGGT	1 cut(s)	436
SfaNI	GCATC	4 cut(s)	259, 598, 625, 719
SfcI	CTRYAG	1 cut(s)	396
Sfr274I	CTCGAG	1 cut(s)	12
Sfr303I	CCGCGG	1 cut(s)	786
SgrBI	CCGCGG	1 cut(s)	786
SlaI	CTCGAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	4 cut(s)	234, 240, 546, 882
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	1 cut(s)	366
SsiI	CCGC	6 cut(s)	24, 156, 162, 183, 783, 785
SspMI	CTAG	2 cut(s)	690, 934
StyD4I	CCNGG	3 cut(s)	295, 436, 611
TaaI	ACNGT	2 cut(s)	481, 632
TaiI	ACGT	2 cut(s)	148, 181
TaqI	TCGA	2 cut(s)	13, 917
TasI	AATT	1 cut(s)	366
TfiI	GAWTC	3 cut(s)	36, 286, 770
Tru1I	TTAA	3 cut(s)	129, 432, 834
Tru9I	TTAA	3 cut(s)	129, 432, 834
TscAI	CASTG	1 cut(s)	798
TseFI	GTSAC	3 cut(s)	53, 850, 926
TseI	GCWGC	3 cut(s)	395, 398, 464
Tsp45I	GTSAC	3 cut(s)	53, 850, 926
TspDTI	ATGAA	3 cut(s)	212, 238, 252
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	1 cut(s)	798
XagI	CCTNNNNNAGG	1 cut(s)	12
XapI	RAATTY	1 cut(s)	366
XhoI	CTCGAG	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	2 cut(s)	690, 934
Zsp2I	ATGCAT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.