Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0019136

Physical Location & Seq

Genomic Coordinates Forward (+)

8423243 .. 8426227

Gene Structure 2985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G059700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCACCTCCGCGAGGCCGTGGTGGTAGTGGTGGTGGATTCAGGGGCAGAGGTGATGGAGGGAGAGGTGGAAGAGGAGGAGGCAGGTTTGGTGGTGGAAGAGGCGGTGACAGAGGTGGTAGTGCCTTTAAAAGCCGTGGCGGAGGCCGTGGTGGTGATCGTGGAGGCCGTGGAGGAAGGGGCCGTGGTGGAGGAATGAAGGGTGGAAACAAAGTTGTGGTCGAGCCTCACAGACATGAAGGGGTTTTCATTGCCAAGGGTAAAGAAGATGCTCTTGTTACCAAGAATATGGTGCCCGGGGAAGCTGTATACAATGAGAAGAGGATATCTGTTCAGAATGAGGATGGAACAAAAGTTGAATATAGAATTTGGAACCCTTTCCGTTCTAAGTTGGCTGCAGCTATTCTCGGTGGTGTTGATGATATATGGATTAAACCTGGTGCTCGTGTTCTCTACCTTGGGGCTGCTTCTGGCACCACAGTGTCTCATGTGTCTGACATTGTTGGCCCTACTGGAGTTGTTTATGCAGTGGAGTTTTCTCATAGAAGTGGCAGAGACTTGGTAAACATGGCAAAGAAGCGCACAAATGTTATACCCATTATTGAAGATGCCAGACATCCAGCTAAATATCGTATGCTTGTTGGCATGGTAGATGTAATATTTTCTGATGTTGCACAACCTGATCAGGCTAGGATTGTAGCATTGAATGCATCATATTTTCTCAAGGCTGGAGGTCACTTTGTTATCTCAATTAAGGCCAATTGCATTGATTCAACCTCGCCTGCGGAAGCAGTTTTCCAACAGGAGGTGAAGAGGCTGCAGGCAGATCAGTTTAAGCCTATGGAACAAGTCACTCTTGAACCTTTCGAGCGCGACCATGCTTGTGTGGTTGGTGGCTATCGTGTGCCAAAGAAGTCAAAAACTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000494 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0006139 GO:0006325 GO:0006364 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008213 GO:0008276 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0015030 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0016569 GO:0016570 GO:0016571 GO:0016592 GO:0016604 GO:0016740 GO:0016741 GO:0016787 GO:0016788 GO:0018364 GO:0019538 GO:0022613 GO:0030515 GO:0030684 GO:0031123 GO:0031126 GO:0031167 GO:0031428 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0033967 GO:0034470 GO:0034641 GO:0034660 GO:0034963 GO:0036009 GO:0036211 GO:0042054 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1901564 GO:1990258 GO:1990259 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fibrillarin

Protein Analysis

311

Amino Acids

32.85

Weight (kDa)

10.15

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25630 AT5G52470
malus_domestica	MD01G1206000.v1.1 MD07G1276800.v1.1
prunus_persica	Prupe.8G059700_v2.0.a1 Prupe.8G117100_v2.0.a1
pyrus_communis	pycom01g21570 pycom07g25170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	75
AccB1I	GGYRCC	3 cut(s)	4, 292, 473
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	2 cut(s)	13, 873
AciI	CCGC	4 cut(s)	11, 105, 141, 785
AcsI	RAATTY	1 cut(s)	366
AfiI	CCNNNNNNNGG	2 cut(s)	14, 805
AgsI	TTSAA	5 cut(s)	359, 605, 706, 774, 860
AjnI	CCWGG	1 cut(s)	436
AleI	CACNNNNGTG	1 cut(s)	479
AluBI	AGCT	3 cut(s)	305, 401, 623
AluI	AGCT	3 cut(s)	305, 401, 623
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	2 cut(s)	489, 549
Ama87I	CYCGRG	1 cut(s)	296
AoxI	GGCC	6 cut(s)	16, 145, 166, 181, 505, 756
ApeKI	GCWGC	5 cut(s)	395, 398, 464, 817, 926
ApoI	RAATTY	1 cut(s)	366
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
Asp700I	GAANNNNTTC	1 cut(s)	377
AspLEI	GCGC	2 cut(s)	582, 873
AspS9I	GGNCC	2 cut(s)	181, 506
AsuC2I	CCSGG	2 cut(s)	297, 298
AsuHPI	GGTGA	4 cut(s)	65, 119, 167, 820
AvaI	CYCGRG	1 cut(s)	296
BaeGI	GKGCMC	1 cut(s)	297
BanI	GGYRCC	3 cut(s)	4, 292, 473
BauI	CACGAG	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	445
BbvI	GCAGC	5 cut(s)	382, 410, 451, 804, 913
BccI	CCATC	2 cut(s)	50, 338
BceAI	ACGGC	5 cut(s)	3, 120, 132, 153, 168
BciT130I	CCWGG	1 cut(s)	438
BclI	TGATCA	1 cut(s)	682
BcnI	CCSGG	2 cut(s)	297, 298
BcoDI	GTCTC	2 cut(s)	489, 549
BfaI	CTAG	1 cut(s)	690
BfmI	CTRYAG	2 cut(s)	396, 818
BfuAI	ACCTGC	1 cut(s)	75
BisI	GCNGC	5 cut(s)	396, 399, 465, 818, 927
BlsI	GCNGC	5 cut(s)	397, 400, 466, 819, 928
Bme1390I	CCNGG	3 cut(s)	297, 298, 438
BmeT110I	CYCGRG	1 cut(s)	296
BmgT120I	GGNCC	2 cut(s)	181, 506
BmiI	GGNNCC	5 cut(s)	6, 182, 294, 374, 475
BmrFI	CCNGG	3 cut(s)	297, 298, 438
BmsI	GCATC	3 cut(s)	259, 598, 719
BpmI	CTGGAG	2 cut(s)	534, 750
BpuEI	CTTGAG	1 cut(s)	707
BpuMI	CCSGG	2 cut(s)	297, 298
BsaJI	CCNNGG	9 cut(s)	19, 136, 148, 169, 184, 255, 296, 297, 457
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 805
Bse1I	ACTGG	1 cut(s)	517
Bse3DI	GCAATG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	9 cut(s)	19, 136, 148, 169, 184, 255, 296, 297, 457
BseGI	GGATG	2 cut(s)	349, 616
BseLI	CCNNNNNNNGG	2 cut(s)	14, 805
BseMI	GCAATG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	2 cut(s)	90, 93
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	5 cut(s)	382, 410, 451, 804, 913
Bsh1236I	CGCG	2 cut(s)	13, 873
BshFI	GGCC	6 cut(s)	18, 147, 168, 183, 507, 758
BshNI	GGYRCC	3 cut(s)	4, 292, 473
BsiHKAI	GWGCWC	1 cut(s)	445
BsiHKCI	CYCGRG	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	297
BslI	CCNNNNNNNGG	2 cut(s)	14, 805
BsmAI	GTCTC	2 cut(s)	489, 549
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	6 cut(s)	18, 147, 168, 183, 507, 758
BsoBI	CYCGRG	1 cut(s)	296
Bsp1286I	GDGCHC	2 cut(s)	297, 445
Bsp143I	GATC	3 cut(s)	157, 682, 826
BspACI	CCGC	4 cut(s)	11, 105, 141, 785
BspANI	GGCC	6 cut(s)	18, 147, 168, 183, 507, 758
BspFNI	CGCG	2 cut(s)	13, 873
BspLI	GGNNCC	5 cut(s)	6, 182, 294, 374, 475
BspMAI	CTGCAG	2 cut(s)	400, 822
BspMI	ACCTGC	1 cut(s)	75
BspT107I	GGYRCC	3 cut(s)	4, 292, 473
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	517
BssECI	CCNNGG	9 cut(s)	19, 136, 148, 169, 184, 255, 296, 297, 457
BssMI	GATC	3 cut(s)	157, 682, 826
BssNAI	GTATAC	1 cut(s)	310
BssSI	CACGAG	1 cut(s)	444
BssT1I	CCWWGG	2 cut(s)	255, 457
Bst1107I	GTATAC	1 cut(s)	310
Bst2BI	CACGAG	1 cut(s)	444
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	481
Bst6I	CTCTTC	4 cut(s)	67, 94, 314, 806
BstAPI	GCANNNNNTGC	1 cut(s)	707
BstC8I	GCNNGC	2 cut(s)	783, 822
BstDEI	CTNAG	2 cut(s)	387, 930
BstDSI	CCRYGG	5 cut(s)	19, 136, 148, 169, 184
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	349, 616
BstFNI	CGCG	2 cut(s)	13, 873
BstHHI	GCGC	2 cut(s)	582, 873
BstKTI	GATC	3 cut(s)	160, 685, 829
BstMAI	GTCTC	2 cut(s)	489, 549
BstMBI	GATC	3 cut(s)	157, 682, 826
BstMWI	GCNNNNNNNGC	1 cut(s)	707
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	3 cut(s)	295, 296, 436
BstSFI	CTRYAG	2 cut(s)	396, 818
BstSLI	GKGCMC	1 cut(s)	297
BstUI	CGCG	2 cut(s)	13, 873
BstV1I	GCAGC	5 cut(s)	382, 410, 451, 804, 913
BstXI	CCANNNNNNTGG	1 cut(s)	289
BstZ17I	GTATAC	1 cut(s)	310
BsuRI	GGCC	6 cut(s)	18, 147, 168, 183, 507, 758
BtgI	CCRYGG	5 cut(s)	19, 136, 148, 169, 184
BtsCI	GGATG	2 cut(s)	349, 616
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	2 cut(s)	486, 534
BveI	ACCTGC	1 cut(s)	75
Cac8I	GCNNGC	2 cut(s)	783, 822
CfoI	GCGC	2 cut(s)	582, 873
Cfr13I	GGNCC	2 cut(s)	181, 506
Cfr9I	CCCGGG	1 cut(s)	296
CsiI	ACCWGGT	1 cut(s)	436
CviAII	CATG	5 cut(s)	236, 488, 568, 646, 878
DdeI	CTNAG	2 cut(s)	387, 930
DpnI	GATC	3 cut(s)	159, 684, 828
DpnII	GATC	3 cut(s)	157, 682, 826
DraI	TTTAAA	1 cut(s)	130
Eam1104I	CTCTTC	4 cut(s)	67, 94, 314, 806
EarI	CTCTTC	4 cut(s)	67, 94, 314, 806
EciI	GGCGGA	1 cut(s)	156
Eco130I	CCWWGG	2 cut(s)	255, 457
Eco32I	GATATC	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	296
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	436
EcoRV	GATATC	1 cut(s)	327
EcoT14I	CCWWGG	2 cut(s)	255, 457
EcoT22I	ATGCAT	1 cut(s)	712
ErhI	CCWWGG	2 cut(s)	255, 457
FaeI	CATG	5 cut(s)	239, 491, 571, 649, 881
FalI	AAGNNNNNCTT	4 cut(s)	258, 290, 840, 872
FatI	CATG	5 cut(s)	235, 487, 567, 645, 877
FbaI	TGATCA	1 cut(s)	682
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	5 cut(s)	396, 399, 465, 818, 927
FokI	GGATG	2 cut(s)	356, 603
Fsp4HI	GCNGC	5 cut(s)	396, 399, 465, 818, 927
FspBI	CTAG	1 cut(s)	690
GlaI	GCGC	2 cut(s)	581, 872
GluI	GCNGC	5 cut(s)	396, 399, 465, 818, 927
GsuI	CTGGAG	2 cut(s)	534, 750
HaeIII	GGCC	6 cut(s)	18, 147, 168, 183, 507, 758
HapII	CCGG	1 cut(s)	297
HhaI	GCGC	2 cut(s)	582, 873
Hin1II	CATG	5 cut(s)	239, 491, 571, 649, 881
Hin6I	GCGC	2 cut(s)	580, 871
HinP1I	GCGC	2 cut(s)	580, 871
HinfI	GANTC	2 cut(s)	39, 770
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	4 cut(s)	65, 119, 167, 820
Hpy166II	GTNNAC	2 cut(s)	310, 565
Hpy188I	TCNGA	3 cut(s)	336, 496, 667
Hpy188III	TCNNGA	1 cut(s)	857
Hpy8I	GTNNAC	2 cut(s)	310, 565
HpyAV	CCTTC	3 cut(s)	171, 193, 233
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4V	TGCA	6 cut(s)	398, 527, 674, 710, 765, 820
HpyF10VI	GCNNNNNNNGC	1 cut(s)	707
HpyF3I	CTNAG	2 cut(s)	387, 930
Hsp92II	CATG	5 cut(s)	239, 491, 571, 649, 881
HspAI	GCGC	2 cut(s)	580, 871
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	3 cut(s)	157, 682, 826
Lsp1109I	GCAGC	5 cut(s)	382, 410, 451, 804, 913
LweI	GCATC	3 cut(s)	259, 598, 719
MabI	ACCWGGT	1 cut(s)	436
MaeI	CTAG	1 cut(s)	690
MaeIII	GTNAC	4 cut(s)	107, 277, 734, 850
MalI	GATC	3 cut(s)	159, 684, 828
MboI	GATC	3 cut(s)	157, 682, 826
MboII	GAAGA	6 cut(s)	84, 111, 278, 331, 617, 823
MfeI	CAATTG	1 cut(s)	760
MhlI	GDGCHC	2 cut(s)	297, 445
MluCI	AATT	3 cut(s)	366, 750, 760
MmeI	TCCRAC	1 cut(s)	823
Mph1103I	ATGCAT	1 cut(s)	712
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	4 cut(s)	129, 432, 753, 834
MslI	CAYNNNNRTG	4 cut(s)	234, 479, 546, 882
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	3 cut(s)	297, 298, 438
MunI	CAATTG	1 cut(s)	760
Mva1269I	GAATGC	1 cut(s)	712
MvaI	CCWGG	1 cut(s)	438
MvnI	CGCG	2 cut(s)	13, 873
MwoI	GCNNNNNNNGC	1 cut(s)	707
NciI	CCSGG	2 cut(s)	297, 298
NdeII	GATC	3 cut(s)	157, 682, 826
NlaIII	CATG	5 cut(s)	239, 491, 571, 649, 881
NlaIV	GGNNCC	5 cut(s)	6, 182, 294, 374, 475
NmuCI	GTSAC	3 cut(s)	107, 734, 850
NsiI	ATGCAT	1 cut(s)	712
OliI	CACNNNNGTG	1 cut(s)	479
PcsI	WCGNNNNNNNCGW	1 cut(s)	166
PctI	GAATGC	1 cut(s)	712
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	2 cut(s)	39, 770
PkrI	GCNGC	5 cut(s)	397, 400, 466, 819, 928
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	5 cut(s)	6, 182, 294, 374, 475
PspPI	GGNCC	2 cut(s)	181, 506
PstI	CTGCAG	2 cut(s)	400, 822
RseI	CAYNNNNRTG	4 cut(s)	234, 479, 546, 882
SaqAI	TTAA	4 cut(s)	129, 432, 753, 834
SatI	GCNGC	5 cut(s)	396, 399, 465, 818, 927
Sau3AI	GATC	3 cut(s)	157, 682, 826
Sau96I	GGNCC	2 cut(s)	181, 506
ScrFI	CCNGG	3 cut(s)	297, 298, 438
SduI	GDGCHC	2 cut(s)	297, 445
SexAI	ACCWGGT	1 cut(s)	436
SfaNI	GCATC	3 cut(s)	259, 598, 719
SfcI	CTRYAG	2 cut(s)	396, 818
SmaI	CCCGGG	1 cut(s)	298
SmiMI	CAYNNNNRTG	4 cut(s)	234, 479, 546, 882
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
Sse9I	AATT	3 cut(s)	366, 750, 760
SsiI	CCGC	4 cut(s)	11, 105, 141, 785
SspI	AATATT	1 cut(s)	660
SspMI	CTAG	1 cut(s)	690
StyD4I	CCNGG	3 cut(s)	295, 296, 436
StyI	CCWWGG	2 cut(s)	255, 457
TaaI	ACNGT	1 cut(s)	481
TaqI	TCGA	2 cut(s)	222, 867
TasI	AATT	3 cut(s)	366, 750, 760
TfiI	GAWTC	2 cut(s)	39, 770
Tru1I	TTAA	4 cut(s)	129, 432, 753, 834
Tru9I	TTAA	4 cut(s)	129, 432, 753, 834
TscAI	CASTG	2 cut(s)	486, 534
TseFI	GTSAC	3 cut(s)	107, 734, 850
TseI	GCWGC	5 cut(s)	395, 398, 464, 817, 926
Tsp45I	GTSAC	3 cut(s)	107, 734, 850
TspDTI	ATGAA	3 cut(s)	212, 238, 252
TspGWI	ACGGA	1 cut(s)	371
TspMI	CCCGGG	1 cut(s)	296
TspRI	CASTG	2 cut(s)	486, 534
XagI	CCTNNNNNAGG	1 cut(s)	12
XapI	RAATTY	1 cut(s)	366
XmaI	CCCGGG	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	1 cut(s)	690
Zsp2I	ATGCAT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.