Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019136

Physical Location & Seq

Genomic Coordinates Forward (+)

21294147 .. 21296819

Gene Structure 2673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52470.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAGACCCCCAGTTACAGGAGGACGTGGTGGTGGAGGATTCAGAGGTGGAAGAGATGGTGGTGGAAGAGGTTTTGGAGGTGGAAGAAGCTTTGGAGGAGGCCGTAGTGGTGACAGAGGCCGTAGTGGGCCTCGCGGCAGAGGACGTGGTGCGCCTCGTGGTCGTGGAGGACCACCTCGTGGAGGAATGAAAGGAGGAAGCAAAGTGATTGTTGAGCCTCACAGACATGCGGGAGTGTTTATTGCTAAGGGTAAAGAAGATGCTCTTGTCACTAAGAATTTGGTTCCTGGTGAAGCTGTTTACAATGAGAAGAGAATCTCTGTTCAGAATGAAGATGGAACTAAGGTTGAATACAGAGTTTGGAATCCGTTTAGATCTAAGTTAGCTGCTGCAATTCTTGGTGGTGTCGACAACATTTGGATCAAACCTGGTGCCAAAGTTCTTTACTTGGGTGCTGCTTCTGGGACCACTGTCTCTCATGTTTCTGACCTCGTTGGCCCTGAGGGATGTGTTTATGCTGTTGAGTTTTCTCATAGAAGTGGTAGAGATTTGGTGAACATGGCCAAGAAGAGAACTAACGTTATTCCAATCATTGAAGATGCTAGACATCCGGCTAAGTACAGAATGCTCGTGGGCATGGTTGATGTCATATTCTCTGATGTTGCTCAGCCAGATCAGGCAAGAATCTTGGCCCTGAATGCCTCATTTTTCCTCAAAACTGGTGGACACTTTGTTATCTCAATCAAGGCCAACTGTATCGACTCTACAGTTGCAGCAGAAGCAGTCTTCCAGAGCGAGGTGAAGAAGCTGCAACAAGAGCAGTTTAAGCCAGCAGAACAGGTGACTCTCGAGCCGTTTGAGCGTGACCATGCCTGTGTTGTTGGTGGTTACCGCATGCCGAAGAAACAAAAGACCCCAGCCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000494 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0006139 GO:0006325 GO:0006364 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008213 GO:0008276 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0015030 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0016569 GO:0016570 GO:0016571 GO:0016592 GO:0016604 GO:0016740 GO:0016741 GO:0016787 GO:0016788 GO:0018364 GO:0019538 GO:0022613 GO:0030515 GO:0030684 GO:0031123 GO:0031126 GO:0031167 GO:0031428 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0033967 GO:0034470 GO:0034641 GO:0034660 GO:0034963 GO:0036009 GO:0036211 GO:0042054 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1901564 GO:1990258 GO:1990259 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fibrillarin

Protein Analysis

308

Amino Acids

32.83

Weight (kDa)

10.15

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fibrillarin	PF01269	71 - 226	9e-77	Fibrillarin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25630 AT5G52470
malus_domestica	MD01G1206000.v1.1 MD07G1276800.v1.1
prunus_persica	Prupe.8G059700_v2.0.a1 Prupe.8G117100_v2.0.a1
pyrus_communis	pycom01g21570 pycom07g25170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	431
AccB7I	CCANNNNNTGG	1 cut(s)	179
AccI	GTMKAC	1 cut(s)	408
AccII	CGCG	1 cut(s)	135
AciI	CCGC	3 cut(s)	135, 230, 892
AclI	AACGTT	1 cut(s)	579
AclWI	GGATC	1 cut(s)	428
AcoI	YGGCCR	1 cut(s)	561
AcsI	RAATTY	1 cut(s)	277
AdeI	CACNNNGTG	1 cut(s)	179
AfaI	GTAC	1 cut(s)	620
AfiI	CCNNNNNNNGG	4 cut(s)	17, 179, 182, 796
AgsI	TTSAA	2 cut(s)	350, 596
AjiI	CACGTC	2 cut(s)	26, 146
AjnI	CCWGG	2 cut(s)	286, 427
AluBI	AGCT	4 cut(s)	90, 296, 386, 808
AluI	AGCT	4 cut(s)	90, 296, 386, 808
Alw26I	GTCTC	1 cut(s)	478
AlwI	GGATC	1 cut(s)	428
Ama87I	CYCGRG	1 cut(s)	848
AoxI	GGCC	7 cut(s)	100, 118, 128, 496, 561, 690, 747
ApeKI	GCWGC	5 cut(s)	386, 389, 455, 773, 808
ApoI	RAATTY	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	5 cut(s)	128, 170, 465, 497, 691
AsuHPI	GGTGA	5 cut(s)	122, 302, 565, 811, 853
AvaI	CYCGRG	1 cut(s)	848
AvaII	GGWCC	2 cut(s)	170, 465
AxyI	CCTNAGG	1 cut(s)	501
BalI	TGGCCA	1 cut(s)	563
BanI	GGYRCC	1 cut(s)	431
BauI	CACGAG	3 cut(s)	156, 177, 629
BbsI	GAAGAC	1 cut(s)	778
BbvI	GCAGC	5 cut(s)	373, 376, 442, 785, 795
BccI	CCATC	2 cut(s)	50, 329
BceAI	ACGGC	3 cut(s)	87, 105, 838
BciT130I	CCWGG	2 cut(s)	288, 429
BcoDI	GTCTC	1 cut(s)	478
BfaI	CTAG	1 cut(s)	603
BfmI	CTRYAG	1 cut(s)	765
BglII	AGATCT	1 cut(s)	374
BisI	GCNGC	6 cut(s)	136, 387, 390, 456, 774, 809
BlpI	GCTNAGC	1 cut(s)	666
BlsI	GCNGC	6 cut(s)	137, 388, 391, 457, 775, 810
Bme1390I	CCNGG	2 cut(s)	288, 429
Bme18I	GGWCC	2 cut(s)	170, 465
BmeT110I	CYCGRG	1 cut(s)	848
BmgBI	CACGTC	2 cut(s)	26, 146
BmgT120I	GGNCC	5 cut(s)	128, 170, 465, 497, 691
BmiI	GGNNCC	3 cut(s)	285, 433, 466
BmrFI	CCNGG	2 cut(s)	288, 429
BmrI	ACTGGG	1 cut(s)	5
BmsI	GCATC	2 cut(s)	250, 589
BmuI	ACTGGG	1 cut(s)	5
BoxI	GACNNNNGTC	1 cut(s)	470
BpiI	GAAGAC	1 cut(s)	778
Bpu10I	CCTNAGC	1 cut(s)	246
Bpu1102I	GCTNAGC	1 cut(s)	666
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 179, 182, 796
Bse1I	ACTGG	2 cut(s)	11, 724
Bse21I	CCTNAGG	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	288, 429
BseGI	GGATG	2 cut(s)	512, 607
BseLI	CCNNNNNNNGG	4 cut(s)	17, 179, 182, 796
BseMII	CTCAG	2 cut(s)	492, 680
BseNI	ACTGG	2 cut(s)	11, 724
BseRI	GAGGAG	1 cut(s)	111
BseXI	GCAGC	5 cut(s)	373, 376, 442, 785, 795
BseYI	CCCAGC	1 cut(s)	916
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	7 cut(s)	102, 120, 130, 498, 563, 692, 749
BshNI	GGYRCC	1 cut(s)	431
BsiHKCI	CYCGRG	1 cut(s)	848
BsiSI	CCGG	1 cut(s)	611
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	4 cut(s)	17, 179, 182, 796
BsmAI	GTCTC	1 cut(s)	478
BsmFI	GGGAC	1 cut(s)	478
BsmI	GAATGC	2 cut(s)	630, 703
BsnI	GGCC	7 cut(s)	102, 120, 130, 498, 563, 692, 749
BsoBI	CYCGRG	1 cut(s)	848
Bsp143I	GATC	3 cut(s)	374, 420, 673
Bsp1720I	GCTNAGC	1 cut(s)	666
BspACI	CCGC	3 cut(s)	135, 230, 892
BspANI	GGCC	7 cut(s)	102, 120, 130, 498, 563, 692, 749
BspCNI	CTCAG	2 cut(s)	493, 679
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	3 cut(s)	285, 433, 466
BspPI	GGATC	1 cut(s)	428
BspT107I	GGYRCC	1 cut(s)	431
BsrI	ACTGG	2 cut(s)	11, 724
BssMI	GATC	3 cut(s)	374, 420, 673
BssSI	CACGAG	3 cut(s)	156, 177, 629
Bst2BI	CACGAG	3 cut(s)	156, 177, 629
Bst2UI	CCWGG	2 cut(s)	288, 429
Bst4CI	ACNGT	3 cut(s)	472, 755, 769
Bst6I	CTCTTC	4 cut(s)	46, 61, 305, 563
BstC8I	GCNNGC	2 cut(s)	831, 896
BstDEI	CTNAG	7 cut(s)	246, 273, 342, 378, 501, 615, 666
BstEII	GGTNACC	1 cut(s)	887
BstENI	CCTNNNNNAGG	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	512, 607
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	3 cut(s)	377, 423, 676
BstMAI	GTCTC	1 cut(s)	478
BstMBI	GATC	3 cut(s)	374, 420, 673
BstMWI	GCNNNNNNNGC	5 cut(s)	698, 779, 817, 826, 859
BstNI	CCWGG	2 cut(s)	288, 429
BstNSI	RCATGY	2 cut(s)	230, 898
BstPAI	GACNNNNGTC	1 cut(s)	470
BstPI	GGTNACC	1 cut(s)	887
BstSCI	CCNGG	2 cut(s)	286, 427
BstSFI	CTRYAG	1 cut(s)	765
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	5 cut(s)	373, 376, 442, 785, 795
BstV2I	GAAGAC	1 cut(s)	778
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
Bsu36I	CCTNAGG	1 cut(s)	501
BsuRI	GGCC	7 cut(s)	102, 120, 130, 498, 563, 692, 749
BtrI	CACGTC	2 cut(s)	26, 146
BtsCI	GGATG	2 cut(s)	512, 607
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	2 cut(s)	831, 896
CfoI	GCGC	1 cut(s)	154
Cfr13I	GGNCC	5 cut(s)	128, 170, 465, 497, 691
CsiI	ACCWGGT	1 cut(s)	427
Csp6I	GTAC	1 cut(s)	619
CspCI	CAANNNNNGTGG	2 cut(s)	703, 738
CviAII	CATG	6 cut(s)	227, 479, 559, 637, 869, 895
CviQI	GTAC	1 cut(s)	619
DdeI	CTNAG	7 cut(s)	246, 273, 342, 378, 501, 615, 666
DpnI	GATC	3 cut(s)	376, 422, 675
DpnII	GATC	3 cut(s)	374, 420, 673
DraIII	CACNNNGTG	1 cut(s)	179
EaeI	YGGCCR	1 cut(s)	561
Eam1104I	CTCTTC	4 cut(s)	46, 61, 305, 563
EarI	CTCTTC	4 cut(s)	46, 61, 305, 563
Eco47I	GGWCC	2 cut(s)	170, 465
Eco81I	CCTNAGG	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	848
Eco91I	GGTNACC	1 cut(s)	887
EcoNI	CCTNNNNNAGG	1 cut(s)	180
EcoO65I	GGTNACC	1 cut(s)	887
EcoRII	CCWGG	2 cut(s)	286, 427
FaeI	CATG	6 cut(s)	230, 482, 562, 640, 872, 898
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	6 cut(s)	226, 478, 558, 636, 868, 894
FauI	CCCGC	1 cut(s)	223
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	6 cut(s)	136, 387, 390, 456, 774, 809
FokI	GGATG	2 cut(s)	519, 594
Fsp4HI	GCNGC	6 cut(s)	136, 387, 390, 456, 774, 809
FspBI	CTAG	1 cut(s)	603
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	6 cut(s)	136, 387, 390, 456, 774, 809
GsaI	CCCAGC	1 cut(s)	920
HaeIII	GGCC	7 cut(s)	102, 120, 130, 498, 563, 692, 749
HapII	CCGG	1 cut(s)	611
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	6 cut(s)	230, 482, 562, 640, 872, 898
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	88
HinfI	GANTC	6 cut(s)	39, 315, 364, 684, 761, 844
HpaII	CCGG	1 cut(s)	611
HphI	GGTGA	5 cut(s)	122, 302, 565, 811, 853
Hpy166II	GTNNAC	4 cut(s)	301, 409, 556, 725
Hpy188I	TCNGA	4 cut(s)	44, 327, 487, 658
Hpy188III	TCNNGA	2 cut(s)	790, 848
Hpy8I	GTNNAC	4 cut(s)	301, 409, 556, 725
HpyCH4III	ACNGT	3 cut(s)	472, 755, 769
HpyCH4IV	ACGT	3 cut(s)	25, 145, 579
HpyCH4V	TGCA	3 cut(s)	392, 773, 811
HpyF10VI	GCNNNNNNNGC	5 cut(s)	698, 779, 817, 826, 859
HpyF3I	CTNAG	7 cut(s)	246, 273, 342, 378, 501, 615, 666
HpySE526I	ACGT	3 cut(s)	25, 145, 579
Hsp92II	CATG	6 cut(s)	230, 482, 562, 640, 872, 898
HspAI	GCGC	1 cut(s)	152
Kzo9I	GATC	3 cut(s)	374, 420, 673
Lsp1109I	GCAGC	5 cut(s)	373, 376, 442, 785, 795
LweI	GCATC	2 cut(s)	250, 589
MabI	ACCWGGT	1 cut(s)	427
MaeI	CTAG	1 cut(s)	603
MaeII	ACGT	3 cut(s)	25, 145, 579
MaeIII	GTNAC	6 cut(s)	13, 110, 268, 841, 863, 887
MalI	GATC	3 cut(s)	376, 422, 675
MboI	GATC	3 cut(s)	374, 420, 673
MflI	RGATCY	1 cut(s)	374
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	2 cut(s)	277, 393
MluNI	TGGCCA	1 cut(s)	563
MlyI	GAGTC	2 cut(s)	755, 838
Mox20I	TGGCCA	1 cut(s)	563
MscI	TGGCCA	1 cut(s)	563
MseI	TTAA	1 cut(s)	825
MslI	CAYNNNNRTG	3 cut(s)	225, 537, 873
Msp20I	TGGCCA	1 cut(s)	563
MspI	CCGG	1 cut(s)	611
MspR9I	CCNGG	2 cut(s)	288, 429
Mva1269I	GAATGC	2 cut(s)	630, 703
MvaI	CCWGG	2 cut(s)	288, 429
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	5 cut(s)	698, 779, 817, 826, 859
NdeII	GATC	3 cut(s)	374, 420, 673
NlaIII	CATG	6 cut(s)	230, 482, 562, 640, 872, 898
NlaIV	GGNNCC	3 cut(s)	285, 433, 466
NmuCI	GTSAC	4 cut(s)	110, 268, 841, 863
NspI	RCATGY	2 cut(s)	230, 898
PaeI	GCATGC	1 cut(s)	898
PaeR7I	CTCGAG	1 cut(s)	848
PctI	GAATGC	2 cut(s)	630, 703
PfeI	GAWTC	4 cut(s)	39, 315, 364, 684
PflMI	CCANNNNNTGG	1 cut(s)	179
PkrI	GCNGC	6 cut(s)	137, 388, 391, 457, 775, 810
PleI	GAGTC	2 cut(s)	755, 838
PpsI	GAGTC	2 cut(s)	755, 838
PshAI	GACNNNNGTC	1 cut(s)	470
Psp1406I	AACGTT	1 cut(s)	579
Psp6I	CCWGG	2 cut(s)	286, 427
PspEI	GGTNACC	1 cut(s)	887
PspFI	CCCAGC	1 cut(s)	916
PspGI	CCWGG	2 cut(s)	286, 427
PspN4I	GGNNCC	3 cut(s)	285, 433, 466
PspPI	GGNCC	5 cut(s)	128, 170, 465, 497, 691
PsuI	RGATCY	1 cut(s)	374
RsaI	GTAC	1 cut(s)	620
RsaNI	GTAC	1 cut(s)	619
RseI	CAYNNNNRTG	3 cut(s)	225, 537, 873
SalI	GTCGAC	1 cut(s)	407
SaqAI	TTAA	1 cut(s)	825
SatI	GCNGC	6 cut(s)	136, 387, 390, 456, 774, 809
Sau3AI	GATC	3 cut(s)	374, 420, 673
Sau96I	GGNCC	5 cut(s)	128, 170, 465, 497, 691
SchI	GAGTC	2 cut(s)	755, 838
ScrFI	CCNGG	2 cut(s)	288, 429
SexAI	ACCWGGT	1 cut(s)	427
SfaNI	GCATC	2 cut(s)	250, 589
SfcI	CTRYAG	1 cut(s)	765
Sfr274I	CTCGAG	1 cut(s)	848
SinI	GGWCC	2 cut(s)	170, 465
SlaI	CTCGAG	1 cut(s)	848
SmiMI	CAYNNNNRTG	3 cut(s)	225, 537, 873
SmlI	CTYRAG	1 cut(s)	848
SmoI	CTYRAG	1 cut(s)	848
SphI	GCATGC	1 cut(s)	898
Sse9I	AATT	2 cut(s)	277, 393
SsiI	CCGC	3 cut(s)	135, 230, 892
SspMI	CTAG	1 cut(s)	603
StyD4I	CCNGG	2 cut(s)	286, 427
TaaI	ACNGT	3 cut(s)	472, 755, 769
TaiI	ACGT	3 cut(s)	28, 148, 582
TaqI	TCGA	3 cut(s)	408, 759, 849
TasI	AATT	2 cut(s)	277, 393
TatI	WGTACW	1 cut(s)	618
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	4 cut(s)	39, 315, 364, 684
Tru1I	TTAA	1 cut(s)	825
Tru9I	TTAA	1 cut(s)	825
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	4 cut(s)	110, 268, 841, 863
TseI	GCWGC	5 cut(s)	386, 389, 455, 773, 808
Tsp45I	GTSAC	4 cut(s)	110, 268, 841, 863
TspDTI	ATGAA	2 cut(s)	203, 345
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	475
Van91I	CCANNNNNTGG	1 cut(s)	179
VpaK11BI	GGWCC	2 cut(s)	170, 465
XagI	CCTNNNNNAGG	1 cut(s)	180
XapI	RAATTY	1 cut(s)	277
XceI	RCATGY	2 cut(s)	230, 898
XhoI	CTCGAG	1 cut(s)	848
XmiI	GTMKAC	1 cut(s)	408
XspI	CTAG	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.