Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005608

Physical Location & Seq

Genomic Coordinates Reverse (-)

13214721 .. 13216586

Gene Structure 1866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGGAGAAACTGTTAAAGAGCGTGGTGATGGAAGTGCAGAGCTGGTTAAATCCGTAGCTGATAAGCATGCCGGTCTCGTGAGACCAGTTGCTAAATATTACTCTGCAGTTAAAGATGCTATGGTGTGTGGGAAAGGAAGATATACGCTTGTAAAAGACGTAGACGAGGTGGAAAATGGAGTGTATGACAAGCCTCTTCCATGCTTTGGTTGTGGAATCGGATGGTTCTCCTTTCTCTTGGGTTTTGTGTTCCCTTTCTTATGGTACTATGCAACACTTTTATATTTCGGGAACTACTACCGCAAGGATCCTAGAGAAAGAGCCGGCCTTGCTGCTTCCGCAATCACTGCGATGGGATTCTCCCTCTTGCTACTAGTGATTGTTGTTTTCTGGTGGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.88

Weight (kDa)

8.4

Isoelectric Point (pI)

12.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060
fragaria_vesca	FvH4_1g08050 FvH4_1g08050 FvH4_1g08050
malus_domestica	MD02G1085200.v1.1 MD15G1212300.v1.1
prunus_persica	Prupe.7G204400_v2.0.a1 Prupe.7G204400_v2.0.a1
pyrus_communis	pycom02g06800 pycom15g18860
rosa_chinensis	RchiOBHm_Chr2g0094101
rosa_laevigata	RLG00000016455
rosa_multiflora	Rmu_ssc0000149.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147480
rosa_rugosa	Rorug02G0040900
rosa_samantha	Rh2AG088500 Rh2BG088600 Rh2CG091000 Rh2DG087600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	206
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	2 cut(s)	301, 339
AclWI	GGATC	2 cut(s)	302, 315
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	206
AhlI	ACTAGT	1 cut(s)	373
AluBI	AGCT	2 cut(s)	43, 59
AluI	AGCT	2 cut(s)	43, 59
Alw26I	GTCTC	2 cut(s)	76, 80
AlwI	GGATC	2 cut(s)	302, 315
AoxI	GGCC	1 cut(s)	325
ApeKI	GCWGC	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	307
BauI	CACGAG	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	3 cut(s)	23, 216, 346
BcoDI	GTCTC	2 cut(s)	76, 80
BcuI	ACTAGT	1 cut(s)	373
BfaI	CTAG	2 cut(s)	312, 374
BfmI	CTRYAG	1 cut(s)	105
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
BmiI	GGNNCC	1 cut(s)	309
BmsI	GCATC	1 cut(s)	106
BsaI	GGTCTC	2 cut(s)	76, 80
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse118I	RCCGGY	2 cut(s)	71, 323
Bse1I	ACTGG	1 cut(s)	86
BseGI	GGATG	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseNI	ACTGG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	319
BsgI	GTGCAG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	327
BsiSI	CCGG	2 cut(s)	72, 324
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	76, 80
BsnI	GGCC	1 cut(s)	327
Bso31I	GGTCTC	2 cut(s)	76, 80
Bsp143I	GATC	1 cut(s)	307
BspACI	CCGC	2 cut(s)	301, 339
BspANI	GGCC	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	309
BspMAI	CTGCAG	1 cut(s)	109
BspPI	GGATC	2 cut(s)	302, 315
BspTNI	GGTCTC	2 cut(s)	76, 80
BsrFI	RCCGGY	2 cut(s)	71, 323
BsrI	ACTGG	1 cut(s)	86
BssAI	RCCGGY	2 cut(s)	71, 323
BssMI	GATC	1 cut(s)	307
BssSI	CACGAG	1 cut(s)	77
Bst2BI	CACGAG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstC8I	GCNNGC	2 cut(s)	69, 325
BstF5I	GGATG	1 cut(s)	227
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	2 cut(s)	76, 80
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 338, 347
BstNSI	RCATGY	1 cut(s)	71
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	1 cut(s)	327
BtgZI	GCGATG	1 cut(s)	365
BtsCI	GGATG	1 cut(s)	227
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	2 cut(s)	69, 325
Cfr10I	RCCGGY	2 cut(s)	71, 323
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	2 cut(s)	68, 201
CviJI	RGCY	6 cut(s)	43, 59, 193, 323, 327, 397
CviKI_1	RGCY	6 cut(s)	43, 59, 193, 323, 327, 397
CviQI	GTAC	1 cut(s)	265
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco31I	GGTCTC	2 cut(s)	76, 80
FaeI	CATG	2 cut(s)	71, 204
FaiI	YATR	8 cut(s)	69, 122, 144, 186, 202, 262, 270, 283
FatI	CATG	2 cut(s)	67, 200
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	2 cut(s)	312, 374
GluI	GCNGC	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	327
HapII	CCGG	2 cut(s)	72, 324
Hin1II	CATG	2 cut(s)	71, 204
HinfI	GANTC	2 cut(s)	216, 357
HpaII	CCGG	2 cut(s)	72, 324
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	221
Hpy188III	TCNNGA	2 cut(s)	79, 289
Hpy8I	GTNNAC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	3 cut(s)	38, 107, 272
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 338, 347
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	71, 204
KroI	GCCGGC	1 cut(s)	323
KroNI	GCCGGC	1 cut(s)	325
Kzo9I	GATC	1 cut(s)	307
LpnPI	CCDG	5 cut(s)	29, 85, 99, 337, 376
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	2 cut(s)	312, 374
MaeII	ACGT	1 cut(s)	159
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	2 cut(s)	150, 188
MflI	RGATCY	1 cut(s)	307
MnlI	CCTC	3 cut(s)	160, 204, 374
MroNI	GCCGGC	1 cut(s)	323
MseI	TTAA	3 cut(s)	15, 48, 111
MslI	CAYNNNNRTG	1 cut(s)	350
MspI	CCGG	2 cut(s)	72, 324
MwoI	GCNNNNNNNGC	3 cut(s)	329, 338, 347
NaeI	GCCGGC	1 cut(s)	325
NdeII	GATC	1 cut(s)	307
NgoMIV	GCCGGC	1 cut(s)	323
NlaIII	CATG	2 cut(s)	71, 204
NlaIV	GGNNCC	1 cut(s)	309
NspI	RCATGY	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	71
PdiI	GCCGGC	1 cut(s)	325
PfeI	GAWTC	2 cut(s)	216, 357
PflMI	CCANNNNNTGG	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	309
PstI	CTGCAG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	350
SaqAI	TTAA	3 cut(s)	15, 48, 111
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	1 cut(s)	307
SetI	ASST	4 cut(s)	45, 61, 162, 171
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	350
SpeI	ACTAGT	1 cut(s)	373
SphI	GCATGC	1 cut(s)	71
SsiI	CCGC	2 cut(s)	301, 339
SspI	AATATT	1 cut(s)	98
SspMI	CTAG	2 cut(s)	312, 374
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	162
TfiI	GAWTC	2 cut(s)	216, 357
Tru1I	TTAA	3 cut(s)	15, 48, 111
Tru9I	TTAA	3 cut(s)	15, 48, 111
TscAI	CASTG	1 cut(s)	352
TseI	GCWGC	1 cut(s)	332
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	1 cut(s)	352
Van91I	CCANNNNNTGG	1 cut(s)	206
XceI	RCATGY	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	2 cut(s)	312, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.