Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005608

Physical Location & Seq

Genomic Coordinates Forward (+)

6799730 .. 6800856

Gene Structure 1127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG087600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGATCAAAAATTTATTGGTGTTGCAGAGGGTTCGTCAGAAGATTTGAGAAATGACGTTGAGTTAGTGAAATCATCCTCTGAAAAGCAGCTTTTGAGACCATCAGCTCGACATTATTCAGTATTTAAAGGGCAAGCAACAGATGCGGATCCTGAAAAAGGAAGATATACGCTTATTAAAGATGCAGAGGACTTTCCATCAGGAATATATGAGAAACAGCTTCCATGCTTTGGCTGTGGGATAGGATGGTTTTCATTTCTTTTAGGCTTTGTCTTCCCATTGATGTGGTACTATGCCACAGTTCTCTACTTTGGAAACTACTATCGCAAAGATCCTAGGGAGCGAGCTGGACTAGCAGCCTCTGCAATTTGTGCACTGGTTTGTTCTGTTGTGTTGGTGGTCATAGTACTGTTTCTGATAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.84

Weight (kDa)

5.82

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060
fragaria_vesca	FvH4_1g08050 FvH4_1g08050 FvH4_1g08050
malus_domestica	MD02G1085200.v1.1 MD15G1212300.v1.1
prunus_persica	Prupe.7G204400_v2.0.a1 Prupe.7G204400_v2.0.a1
pyrus_communis	pycom02g06800 pycom15g18860
rosa_chinensis	RchiOBHm_Chr2g0094101
rosa_laevigata	RLG00000016455
rosa_multiflora	Rmu_ssc0000149.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147480
rosa_rugosa	Rorug02G0040900
rosa_samantha	Rh2AG088500 Rh2BG088600 Rh2CG091000 Rh2DG087600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	230
AciI	CCGC	1 cut(s)	146
AclWI	GGATC	4 cut(s)	12, 143, 156, 326
AcsI	RAATTY	1 cut(s)	11
AfaI	GTAC	2 cut(s)	290, 408
AfiI	CCNNNNNNNGG	2 cut(s)	158, 230
AluBI	AGCT	4 cut(s)	91, 107, 220, 347
AluI	AGCT	4 cut(s)	91, 107, 220, 347
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	1 cut(s)	91
Alw44I	GTGCAC	1 cut(s)	372
AlwI	GGATC	4 cut(s)	12, 143, 156, 326
AlwNI	CAGNNNCTG	1 cut(s)	362
ApaLI	GTGCAC	1 cut(s)	372
ApeKI	GCWGC	2 cut(s)	88, 356
ApoI	RAATTY	1 cut(s)	11
AspA2I	CCTAGG	1 cut(s)	335
AvrII	CCTAGG	1 cut(s)	335
BaeGI	GKGCMC	1 cut(s)	376
BamHI	GGATCC	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	2 cut(s)	100, 368
BccI	CCATC	3 cut(s)	109, 205, 240
BcgI	CGANNNNNNTGC	2 cut(s)	15, 49
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	3 cut(s)	336, 353, 424
BisI	GCNGC	2 cut(s)	89, 357
BlnI	CCTAGG	1 cut(s)	335
BlsI	GCNGC	2 cut(s)	90, 358
BmcAI	AGTACT	1 cut(s)	408
BmiI	GGNNCC	1 cut(s)	150
BmsI	GCATC	2 cut(s)	133, 172
BpiI	GAAGAC	1 cut(s)	265
BsaBI	GATNNNNATC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 230
Bse1I	ACTGG	1 cut(s)	381
Bse8I	GATNNNNATC	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	2 cut(s)	74, 251
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	2 cut(s)	158, 230
BseNI	ACTGG	1 cut(s)	381
BseSI	GKGCMC	1 cut(s)	376
BseXI	GCAGC	2 cut(s)	100, 368
BsiHKAI	GWGCWC	1 cut(s)	376
BslI	CCNNNNNNNGG	2 cut(s)	158, 230
BsmAI	GTCTC	1 cut(s)	91
Bso31I	GGTCTC	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	4, 148, 331
BspACI	CCGC	1 cut(s)	146
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	4 cut(s)	12, 143, 156, 326
BspTNI	GGTCTC	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	3 cut(s)	4, 148, 331
BssT1I	CCWWGG	1 cut(s)	335
Bst4CI	ACNGT	2 cut(s)	301, 411
BstAPI	GCANNNNNTGC	3 cut(s)	143, 362, 371
BstC8I	GCNNGC	2 cut(s)	135, 345
BstENI	CCTNNNNNAGG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	74, 251
BstKTI	GATC	3 cut(s)	7, 151, 334
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	3 cut(s)	4, 148, 331
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 353, 362, 371
BstSLI	GKGCMC	1 cut(s)	376
BstV1I	GCAGC	2 cut(s)	100, 368
BstV2I	GAAGAC	1 cut(s)	265
BstX2I	RGATCY	2 cut(s)	148, 331
BstXI	CCANNNNNNTGG	1 cut(s)	285
BstYI	RGATCY	2 cut(s)	148, 331
BtsCI	GGATG	2 cut(s)	74, 251
BtsIMutI	CAGTG	1 cut(s)	374
Cac8I	GCNNGC	2 cut(s)	135, 345
CaiI	CAGNNNCTG	1 cut(s)	362
Csp6I	GTAC	2 cut(s)	289, 407
CviAII	CATG	1 cut(s)	225
CviJI	RGCY	7 cut(s)	91, 107, 220, 234, 267, 347, 359
CviKI_1	RGCY	7 cut(s)	91, 107, 220, 234, 267, 347, 359
CviQI	GTAC	2 cut(s)	289, 407
DpnI	GATC	3 cut(s)	6, 150, 333
DpnII	GATC	3 cut(s)	4, 148, 331
DraI	TTTAAA	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	335
Eco31I	GGTCTC	1 cut(s)	91
EcoNI	CCTNNNNNAGG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	1 cut(s)	228
FaiI	YATR	6 cut(s)	168, 208, 210, 226, 294, 404
FatI	CATG	1 cut(s)	224
Fnu4HI	GCNGC	2 cut(s)	89, 357
FokI	GGATG	2 cut(s)	61, 258
Fsp4HI	GCNGC	2 cut(s)	89, 357
FspBI	CTAG	3 cut(s)	336, 353, 424
GluI	GCNGC	2 cut(s)	89, 357
Hin1II	CATG	1 cut(s)	228
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	3 cut(s)	40, 82, 417
Hpy188III	TCNNGA	2 cut(s)	152, 201
Hpy8I	GTNNAC	1 cut(s)	374
HpyCH4III	ACNGT	2 cut(s)	301, 411
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	4 cut(s)	26, 185, 365, 374
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 353, 362, 371
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	4, 148, 331
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	4 cut(s)	165, 186, 333, 362
Lsp1109I	GCAGC	2 cut(s)	100, 368
LweI	GCATC	2 cut(s)	133, 172
MaeI	CTAG	3 cut(s)	336, 353, 424
MaeII	ACGT	1 cut(s)	57
MalI	GATC	3 cut(s)	6, 150, 333
MboI	GATC	3 cut(s)	4, 148, 331
MboII	GAAGA	3 cut(s)	53, 174, 265
MflI	RGATCY	2 cut(s)	148, 331
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	2 cut(s)	11, 366
MnlI	CCTC	4 cut(s)	22, 88, 181, 370
MseI	TTAA	2 cut(s)	126, 177
MslI	CAYNNNNRTG	1 cut(s)	283
MwoI	GCNNNNNNNGC	4 cut(s)	143, 353, 362, 371
NdeII	GATC	3 cut(s)	4, 148, 331
NlaIII	CATG	1 cut(s)	228
NlaIV	GGNNCC	1 cut(s)	150
PflMI	CCANNNNNTGG	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	90, 358
PspN4I	GGNNCC	1 cut(s)	150
PstNI	CAGNNNCTG	1 cut(s)	362
PsuI	RGATCY	2 cut(s)	148, 331
RsaI	GTAC	2 cut(s)	290, 408
RsaNI	GTAC	2 cut(s)	289, 407
RseI	CAYNNNNRTG	1 cut(s)	283
SaqAI	TTAA	2 cut(s)	126, 177
SatI	GCNGC	2 cut(s)	89, 357
Sau3AI	GATC	3 cut(s)	4, 148, 331
ScaI	AGTACT	1 cut(s)	408
SduI	GDGCHC	1 cut(s)	376
SetI	ASST	5 cut(s)	60, 93, 109, 222, 349
SfaNI	GCATC	2 cut(s)	133, 172
SmiMI	CAYNNNNRTG	1 cut(s)	283
Sse9I	AATT	2 cut(s)	11, 366
SsiI	CCGC	1 cut(s)	146
SspMI	CTAG	3 cut(s)	336, 353, 424
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	2 cut(s)	301, 411
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	109
TasI	AATT	2 cut(s)	11, 366
TatI	WGTACW	1 cut(s)	406
Tru1I	TTAA	2 cut(s)	126, 177
Tru9I	TTAA	2 cut(s)	126, 177
TscAI	CASTG	1 cut(s)	381
TseI	GCWGC	2 cut(s)	88, 356
TspDTI	ATGAA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	381
Van91I	CCANNNNNTGG	1 cut(s)	230
VneI	GTGCAC	1 cut(s)	372
XagI	CCTNNNNNAGG	1 cut(s)	156
XapI	RAATTY	1 cut(s)	11
XmaJI	CCTAGG	1 cut(s)	335
XspI	CTAG	3 cut(s)	336, 353, 424
ZrmI	AGTACT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.