Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005608

Physical Location & Seq

Genomic Coordinates Forward (+)

23089909 .. 23092224

Gene Structure 2316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57060.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGACGAAAATTCTAAATTTGTATCTGGAAACGGTAGAACCGAGCTGGTTAAATTCATTGCTGATAGGCATGCCAAACTCATGAAACAAGCCTCTCGACATTATTCCGCAATTAAAGATGCTATGGCTCGTGGGAAAAAAAGATATACACTTGTAAAAGATGTAGACGACATGGAAACAGGAGCATATGACAAACCTCTTCCATGCTTTGGTTGTGGAATCGGATGGTTTTCCTTCCTCCTAGGATTTATGTTCCCATTTTTGTGGTACTATGCTGCATTCCTTTATTTCGGGAACTATTATCGTAAAGATCCTAGAGAAAGAGCCGGTCTTGCTGCTTCCGCAATCACTGCGATGGGCTTCTCTCTTGTCTTACTCGTGATTTTTGCTTTCCGGTGGTTTTACTATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.84

Weight (kDa)

9.46

Isoelectric Point (pI)

30.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060
fragaria_vesca	FvH4_1g08050 FvH4_1g08050 FvH4_1g08050
malus_domestica	MD02G1085200.v1.1 MD15G1212300.v1.1
prunus_persica	Prupe.7G204400_v2.0.a1 Prupe.7G204400_v2.0.a1
pyrus_communis	pycom02g06800 pycom15g18860
rosa_chinensis	RchiOBHm_Chr2g0094101
rosa_laevigata	RLG00000016455
rosa_multiflora	Rmu_ssc0000149.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147480
rosa_rugosa	Rorug02G0040900
rosa_samantha	Rh2AG088500 Rh2BG088600 Rh2CG091000 Rh2DG087600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	2 cut(s)	108, 342
AclWI	GGATC	1 cut(s)	305
AcsI	RAATTY	3 cut(s)	10, 17, 53
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	209
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
AlwI	GGATC	1 cut(s)	305
ApeKI	GCWGC	2 cut(s)	275, 335
ApoI	RAATTY	3 cut(s)	10, 17, 53
AspA2I	CCTAGG	1 cut(s)	241
AvrII	CCTAGG	1 cut(s)	241
BauI	CACGAG	2 cut(s)	129, 377
BbvI	GCAGC	2 cut(s)	262, 322
BccI	CCATC	2 cut(s)	219, 349
BfaI	CTAG	2 cut(s)	242, 315
BisI	GCNGC	2 cut(s)	276, 336
BlnI	CCTAGG	1 cut(s)	241
BlsI	GCNGC	2 cut(s)	277, 337
BmsI	GCATC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	241
BsaWI	WCCGGW	1 cut(s)	393
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse118I	RCCGGY	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	1 cut(s)	230
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMI	GCAATG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	262, 322
BsiSI	CCGG	2 cut(s)	327, 394
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmI	GAATGC	1 cut(s)	278
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	2 cut(s)	108, 342
BspHI	TCATGA	1 cut(s)	81
BspPI	GGATC	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	57
BsrFI	RCCGGY	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	1 cut(s)	310
BssSI	CACGAG	2 cut(s)	129, 377
BssT1I	CCWWGG	1 cut(s)	241
Bst2BI	CACGAG	2 cut(s)	129, 377
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	204
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	230
BstKTI	GATC	1 cut(s)	313
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 341, 350
BstNSI	RCATGY	1 cut(s)	74
BstV1I	GCAGC	2 cut(s)	262, 322
BstX2I	RGATCY	1 cut(s)	310
BstXI	CCANNNNNNTGG	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	310
BtgZI	GCGATG	1 cut(s)	368
BtsCI	GGATG	1 cut(s)	230
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	72
CciI	TCATGA	1 cut(s)	81
Cfr10I	RCCGGY	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	4 cut(s)	71, 82, 172, 204
CviJI	RGCY	5 cut(s)	46, 92, 128, 326, 360
CviKI_1	RGCY	5 cut(s)	46, 92, 128, 326, 360
CviQI	GTAC	1 cut(s)	268
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	4 cut(s)	74, 85, 175, 207
FatI	CATG	4 cut(s)	70, 81, 171, 203
FauNDI	CATATG	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	276, 336
FokI	GGATG	1 cut(s)	237
Fsp4HI	GCNGC	2 cut(s)	276, 336
FspBI	CTAG	2 cut(s)	242, 315
GluI	GCNGC	2 cut(s)	276, 336
HapII	CCGG	2 cut(s)	327, 394
Hin1II	CATG	4 cut(s)	74, 85, 175, 207
HinfI	GANTC	1 cut(s)	219
HpaII	CCGG	2 cut(s)	327, 394
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	1 cut(s)	224
Hpy188III	TCNNGA	5 cut(s)	27, 82, 96, 292, 379
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 341, 350
Hsp92II	CATG	4 cut(s)	74, 85, 175, 207
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	5 cut(s)	12, 32, 165, 340, 407
Lsp1109I	GCAGC	2 cut(s)	262, 322
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	2 cut(s)	242, 315
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	1 cut(s)	191
MflI	RGATCY	1 cut(s)	310
MluCI	AATT	4 cut(s)	10, 17, 53, 111
MnlI	CCTC	3 cut(s)	103, 207, 248
MseI	TTAA	2 cut(s)	51, 114
MslI	CAYNNNNRTG	2 cut(s)	262, 353
MspI	CCGG	2 cut(s)	327, 394
Mva1269I	GAATGC	1 cut(s)	278
MwoI	GCNNNNNNNGC	3 cut(s)	332, 341, 350
NdeI	CATATG	1 cut(s)	187
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	4 cut(s)	74, 85, 175, 207
NspI	RCATGY	1 cut(s)	74
PaeI	GCATGC	1 cut(s)	74
PagI	TCATGA	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PctI	GAATGC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	219
PflMI	CCANNNNNTGG	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	277, 337
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	2 cut(s)	262, 353
SaqAI	TTAA	2 cut(s)	51, 114
SatI	GCNGC	2 cut(s)	276, 336
Sau3AI	GATC	1 cut(s)	310
SetI	ASST	2 cut(s)	48, 199
SfaNI	GCATC	1 cut(s)	109
SmiMI	CAYNNNNRTG	2 cut(s)	262, 353
SphI	GCATGC	1 cut(s)	74
Sse9I	AATT	4 cut(s)	10, 17, 53, 111
SsiI	CCGC	2 cut(s)	108, 342
SspMI	CTAG	2 cut(s)	242, 315
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	97
TasI	AATT	4 cut(s)	10, 17, 53, 111
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	2 cut(s)	51, 114
Tru9I	TTAA	2 cut(s)	51, 114
TscAI	CASTG	1 cut(s)	355
TseI	GCWGC	2 cut(s)	275, 335
TspDTI	ATGAA	2 cut(s)	46, 98
TspRI	CASTG	1 cut(s)	355
Van91I	CCANNNNNTGG	1 cut(s)	209
XapI	RAATTY	3 cut(s)	10, 17, 53
XceI	RCATGY	1 cut(s)	74
XmaJI	CCTAGG	1 cut(s)	241
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	2 cut(s)	242, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.