Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005608

Physical Location & Seq

Genomic Coordinates Forward (+)

4716723 .. 4717978

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g06800.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGATCAAAATGCTTCGGGAGAGGGTTTGAGAAACGACCTTGAGCTGGTGAGATCATCATCTGAAAAGCATCTTGAACTTTTGAGACCATCAGCTCGATTAAGTACAATATTTAAAGGGCAAGCAACAGAAGCTGCGGATCCTGAAAAGGGAAAATATACCTTAATTAGAGACGCAGATGACTTTTCGTCAGGGATGTACGAGAAACAGCTTCCCTGCTTTGGCTGCGGGATAGGATGGTTTTCTTTTCTTTTAGGCTTCGTCTTCCCATTAATGTGGTACTATGCCACAGTCCTCTATTTTGGAAATTACTATCGGAAGGATCCTAGGGAGCGAGCAGGACTAGCCGCCTCTGCAATTGCTACACTGGTTTGTTCTGTCGTGCTGTTGATCATAGCATTGTGTCGGATGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.48

Weight (kDa)

6.57

Isoelectric Point (pI)

28.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060
fragaria_vesca	FvH4_1g08050 FvH4_1g08050 FvH4_1g08050
malus_domestica	MD02G1085200.v1.1 MD15G1212300.v1.1
prunus_persica	Prupe.7G204400_v2.0.a1 Prupe.7G204400_v2.0.a1
pyrus_communis	pycom02g06800 pycom15g18860
rosa_chinensis	RchiOBHm_Chr2g0094101
rosa_laevigata	RLG00000016455
rosa_multiflora	Rmu_ssc0000149.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147480
rosa_rugosa	Rorug02G0040900
rosa_samantha	Rh2AG088500 Rh2BG088600 Rh2CG091000 Rh2DG087600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	137, 228, 348
AclWI	GGATC	5 cut(s)	12, 134, 147, 317, 330
AfaI	GTAC	3 cut(s)	106, 200, 281
AfiI	CCNNNNNNNGG	3 cut(s)	46, 149, 221
AgsI	TTSAA	1 cut(s)	77
AhdI	GACNNNNNGTC	1 cut(s)	187
AluBI	AGCT	4 cut(s)	46, 95, 134, 211
AluI	AGCT	4 cut(s)	46, 95, 134, 211
Alw26I	GTCTC	2 cut(s)	79, 165
AlwI	GGATC	5 cut(s)	12, 134, 147, 317, 330
AlwNI	CAGNNNCTG	1 cut(s)	134
ApeKI	GCWGC	2 cut(s)	134, 225
AseI	ATTAAT	1 cut(s)	272
AspA2I	CCTAGG	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	61
AvrII	CCTAGG	1 cut(s)	326
BamHI	GGATCC	2 cut(s)	139, 322
BbsI	GAAGAC	1 cut(s)	256
BbvI	GCAGC	2 cut(s)	121, 212
BccI	CCATC	2 cut(s)	97, 231
BclI	TGATCA	1 cut(s)	390
BcoDI	GTCTC	2 cut(s)	79, 165
BfaI	CTAG	3 cut(s)	327, 344, 415
BisI	GCNGC	3 cut(s)	135, 226, 348
BlnI	CCTAGG	1 cut(s)	326
BlsI	GCNGC	3 cut(s)	136, 227, 349
BmeRI	GACNNNNNGTC	1 cut(s)	187
BmiI	GGNNCC	2 cut(s)	141, 324
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	58
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 149, 221
Bse1I	ACTGG	1 cut(s)	372
Bse8I	GATNNNNATC	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	3 cut(s)	201, 242, 414
BseJI	GATNNNNATC	1 cut(s)	58
BseLI	CCNNNNNNNGG	3 cut(s)	46, 149, 221
BseNI	ACTGG	1 cut(s)	372
BseXI	GCAGC	2 cut(s)	121, 212
BslI	CCNNNNNNNGG	3 cut(s)	46, 149, 221
BsmAI	GTCTC	2 cut(s)	79, 165
BsmBI	CGTCTC	1 cut(s)	165
Bso31I	GGTCTC	1 cut(s)	79
Bsp143I	GATC	5 cut(s)	4, 53, 139, 322, 390
BspACI	CCGC	3 cut(s)	137, 228, 348
BspLI	GGNNCC	2 cut(s)	141, 324
BspPI	GGATC	5 cut(s)	12, 134, 147, 317, 330
BspTNI	GGTCTC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	372
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	5 cut(s)	4, 53, 139, 322, 390
BssT1I	CCWWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	292
BstC8I	GCNNGC	2 cut(s)	123, 336
BstF5I	GGATG	3 cut(s)	201, 242, 414
BstKTI	GATC	5 cut(s)	7, 56, 142, 325, 393
BstMAI	GTCTC	2 cut(s)	79, 165
BstMBI	GATC	5 cut(s)	4, 53, 139, 322, 390
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 225, 344, 353
BstV1I	GCAGC	2 cut(s)	121, 212
BstV2I	GAAGAC	1 cut(s)	256
BstX2I	RGATCY	2 cut(s)	139, 322
BstXI	CCANNNNNNTGG	1 cut(s)	276
BstYI	RGATCY	2 cut(s)	139, 322
BtsCI	GGATG	3 cut(s)	201, 242, 414
BtsIMutI	CAGTG	1 cut(s)	365
Cac8I	GCNNGC	2 cut(s)	123, 336
CaiI	CAGNNNCTG	1 cut(s)	134
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	3 cut(s)	105, 199, 280
CviJI	RGCY	7 cut(s)	46, 95, 134, 211, 225, 258, 347
CviKI_1	RGCY	7 cut(s)	46, 95, 134, 211, 225, 258, 347
CviQI	GTAC	3 cut(s)	105, 199, 280
DpnI	GATC	5 cut(s)	6, 55, 141, 324, 392
DpnII	GATC	5 cut(s)	4, 53, 139, 322, 390
DraI	TTTAAA	1 cut(s)	115
DriI	GACNNNNNGTC	1 cut(s)	187
Eam1105I	GACNNNNNGTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	326
Eco31I	GGTCTC	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	326
Esp3I	CGTCTC	1 cut(s)	165
FaiI	YATR	3 cut(s)	159, 285, 395
FauI	CCCGC	1 cut(s)	221
FbaI	TGATCA	1 cut(s)	390
Fnu4HI	GCNGC	3 cut(s)	135, 226, 348
FokI	GGATG	2 cut(s)	208, 249
Fsp4HI	GCNGC	3 cut(s)	135, 226, 348
FspBI	CTAG	3 cut(s)	327, 344, 415
GluI	GCNGC	3 cut(s)	135, 226, 348
HgaI	GACGC	1 cut(s)	182
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	3 cut(s)	64, 318, 408
Hpy188III	TCNNGA	3 cut(s)	18, 74, 143
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4V	TGCA	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 225, 344, 353
Ksp22I	TGATCA	1 cut(s)	390
Kzo9I	GATC	5 cut(s)	4, 53, 139, 322, 390
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	6 cut(s)	32, 156, 177, 229, 324, 353
Lsp1109I	GCAGC	2 cut(s)	121, 212
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	3 cut(s)	327, 344, 415
MalI	GATC	5 cut(s)	6, 55, 141, 324, 392
MboI	GATC	5 cut(s)	4, 53, 139, 322, 390
MboII	GAAGA	1 cut(s)	256
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	2 cut(s)	139, 322
MluCI	AATT	3 cut(s)	165, 307, 357
MmeI	TCCRAC	1 cut(s)	386
MnlI	CCTC	3 cut(s)	16, 305, 361
MseI	TTAA	4 cut(s)	101, 114, 164, 272
MslI	CAYNNNNRTG	1 cut(s)	274
MunI	CAATTG	1 cut(s)	357
MwoI	GCNNNNNNNGC	4 cut(s)	131, 225, 344, 353
NdeII	GATC	5 cut(s)	4, 53, 139, 322, 390
NlaIV	GGNNCC	2 cut(s)	141, 324
PkrI	GCNGC	3 cut(s)	136, 227, 349
PshBI	ATTAAT	1 cut(s)	272
PspN4I	GGNNCC	2 cut(s)	141, 324
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	2 cut(s)	139, 322
RsaI	GTAC	3 cut(s)	106, 200, 281
RsaNI	GTAC	3 cut(s)	105, 199, 280
RseI	CAYNNNNRTG	1 cut(s)	274
SaqAI	TTAA	4 cut(s)	101, 114, 164, 272
SatI	GCNGC	3 cut(s)	135, 226, 348
Sau3AI	GATC	5 cut(s)	4, 53, 139, 322, 390
SetI	ASST	6 cut(s)	42, 48, 97, 136, 164, 213
SfaNI	GCATC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	3 cut(s)	165, 307, 357
SsiI	CCGC	3 cut(s)	137, 228, 348
SspI	AATATT	1 cut(s)	111
SspMI	CTAG	3 cut(s)	327, 344, 415
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	1 cut(s)	292
TaqI	TCGA	1 cut(s)	97
TasI	AATT	3 cut(s)	165, 307, 357
TatI	WGTACW	1 cut(s)	104
TauI	GCSGC	1 cut(s)	350
Tru1I	TTAA	4 cut(s)	101, 114, 164, 272
Tru9I	TTAA	4 cut(s)	101, 114, 164, 272
TscAI	CASTG	1 cut(s)	372
TseI	GCWGC	2 cut(s)	134, 225
TspRI	CASTG	1 cut(s)	372
VspI	ATTAAT	1 cut(s)	272
XmaJI	CCTAGG	1 cut(s)	326
XspI	CTAG	3 cut(s)	327, 344, 415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.