Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005608

Physical Location & Seq

Genomic Coordinates Forward (+)

7426040 .. 7428015

Gene Structure 1976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG088500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGTCATGGTAGGGCAAGCAACAGATGCGGATCCTGAAAAAGGAAGATATACGCTTATTAAAGATGCAGAGGACTTTCCATCAGGAATATATGAGAAACAGCTTCCATGCTTTGGCTGTGGGATAGGATGGTTTTCATTTCTTTTAGGCTTTGTCTTCCCATTGATGTGGTACTATGCCACAGTTCTCTACTTTGGAAACTACTATCGCAAAGATCCTAGGGAGCGAGCTGGACTAGCAGCCTCTGCAATTTGTGCACTGGTTTGTTCTGTTGTGTTGGTGGTCATAGTACTGTTTCTGATATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

102

Amino Acids

11.47

Weight (kDa)

5.17

Isoelectric Point (pI)

16.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060
fragaria_vesca	FvH4_1g08050 FvH4_1g08050 FvH4_1g08050
malus_domestica	MD02G1085200.v1.1 MD15G1212300.v1.1
prunus_persica	Prupe.7G204400_v2.0.a1 Prupe.7G204400_v2.0.a1
pyrus_communis	pycom02g06800 pycom15g18860
rosa_chinensis	RchiOBHm_Chr2g0094101
rosa_laevigata	RLG00000016455
rosa_multiflora	Rmu_ssc0000149.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147480
rosa_rugosa	Rorug02G0040900
rosa_samantha	Rh2AG088500 Rh2BG088600 Rh2CG091000 Rh2DG087600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	113
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	3 cut(s)	26, 39, 209
AfaI	GTAC	2 cut(s)	173, 291
AfiI	CCNNNNNNNGG	2 cut(s)	41, 113
AluBI	AGCT	2 cut(s)	103, 230
AluI	AGCT	2 cut(s)	103, 230
Alw21I	GWGCWC	1 cut(s)	259
Alw44I	GTGCAC	1 cut(s)	255
AlwI	GGATC	3 cut(s)	26, 39, 209
AlwNI	CAGNNNCTG	1 cut(s)	245
ApaLI	GTGCAC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	239
AspA2I	CCTAGG	1 cut(s)	218
AvrII	CCTAGG	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	259
BamHI	GGATCC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	2 cut(s)	88, 123
BfaI	CTAG	3 cut(s)	219, 236, 307
BisI	GCNGC	1 cut(s)	240
BlnI	CCTAGG	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	241
BmcAI	AGTACT	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	33
BmsI	GCATC	2 cut(s)	16, 55
BpiI	GAAGAC	1 cut(s)	148
BsaBI	GATNNNNATC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 113
Bse1I	ACTGG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	218
BseGI	GGATG	1 cut(s)	134
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	2 cut(s)	41, 113
BseNI	ACTGG	1 cut(s)	264
BseSI	GKGCMC	1 cut(s)	259
BseXI	GCAGC	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	259
BslI	CCNNNNNNNGG	2 cut(s)	41, 113
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	2 cut(s)	31, 214
BspACI	CCGC	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	3 cut(s)	26, 39, 209
BsrI	ACTGG	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	2 cut(s)	31, 214
BssT1I	CCWWGG	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	184, 294
BstAPI	GCANNNNNTGC	3 cut(s)	26, 245, 254
BstC8I	GCNNGC	2 cut(s)	18, 228
BstENI	CCTNNNNNAGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	134
BstKTI	GATC	2 cut(s)	34, 217
BstMBI	GATC	2 cut(s)	31, 214
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 236, 245, 254
BstSLI	GKGCMC	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	2 cut(s)	31, 214
BstXI	CCANNNNNNTGG	1 cut(s)	168
BstYI	RGATCY	2 cut(s)	31, 214
BtsCI	GGATG	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	257
Cac8I	GCNNGC	2 cut(s)	18, 228
CaiI	CAGNNNCTG	1 cut(s)	245
Csp6I	GTAC	2 cut(s)	172, 290
CviAII	CATG	2 cut(s)	7, 108
CviJI	RGCY	5 cut(s)	103, 117, 150, 230, 242
CviKI_1	RGCY	5 cut(s)	103, 117, 150, 230, 242
CviQI	GTAC	2 cut(s)	172, 290
DpnI	GATC	2 cut(s)	33, 216
DpnII	GATC	2 cut(s)	31, 214
Eco130I	CCWWGG	1 cut(s)	218
EcoNI	CCTNNNNNAGG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	2 cut(s)	10, 111
FaiI	YATR	7 cut(s)	8, 51, 91, 93, 109, 177, 287
FatI	CATG	2 cut(s)	6, 107
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	3 cut(s)	219, 236, 307
GluI	GCNGC	1 cut(s)	240
Hin1II	CATG	2 cut(s)	10, 111
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	2 cut(s)	35, 84
Hpy8I	GTNNAC	1 cut(s)	257
HpyCH4III	ACNGT	2 cut(s)	184, 294
HpyCH4V	TGCA	3 cut(s)	68, 248, 257
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 236, 245, 254
Hsp92II	CATG	2 cut(s)	10, 111
Kzo9I	GATC	2 cut(s)	31, 214
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	4 cut(s)	48, 69, 216, 245
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	2 cut(s)	16, 55
MaeI	CTAG	3 cut(s)	219, 236, 307
MalI	GATC	2 cut(s)	33, 216
MboI	GATC	2 cut(s)	31, 214
MboII	GAAGA	2 cut(s)	57, 148
MflI	RGATCY	2 cut(s)	31, 214
MhlI	GDGCHC	1 cut(s)	259
MluCI	AATT	1 cut(s)	249
MnlI	CCTC	2 cut(s)	64, 253
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	166
MwoI	GCNNNNNNNGC	4 cut(s)	26, 236, 245, 254
NdeII	GATC	2 cut(s)	31, 214
NlaIII	CATG	2 cut(s)	10, 111
NlaIV	GGNNCC	1 cut(s)	33
PflMI	CCANNNNNTGG	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	2 cut(s)	31, 214
RsaI	GTAC	2 cut(s)	173, 291
RsaNI	GTAC	2 cut(s)	172, 290
RseI	CAYNNNNRTG	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	2 cut(s)	31, 214
ScaI	AGTACT	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	259
SetI	ASST	2 cut(s)	105, 232
SfaNI	GCATC	2 cut(s)	16, 55
SmiMI	CAYNNNNRTG	1 cut(s)	166
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	3 cut(s)	219, 236, 307
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	2 cut(s)	184, 294
TasI	AATT	1 cut(s)	249
TatI	WGTACW	1 cut(s)	289
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	264
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	264
Van91I	CCANNNNNTGG	1 cut(s)	113
VneI	GTGCAC	1 cut(s)	255
XagI	CCTNNNNNAGG	1 cut(s)	39
XmaJI	CCTAGG	1 cut(s)	218
XspI	CTAG	3 cut(s)	219, 236, 307
ZrmI	AGTACT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.