Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005608

Physical Location & Seq

Genomic Coordinates Reverse (-)

18931964 .. 18934869

Gene Structure 2906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G204400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGATCAAAATGCTTCGGCAGAGGGTTTGAGAAACGACCTTGAGCTAGTGAGATCCTCCTCTGAAAAGCAACTTTTGAGACCATCAGCCCGATATTATTCAGTTTTTAAAGGGCAAGCAACAGATGCTGCAGATCCTGAAAAAGGCAGGTATACCCTAATTCGGGATGCAGAGGACTTTTCATCAGGGATGTACGAGAAGCAGCTTCCATGCTTTGGCTGCGGGATAGGATGGTTTTCTTTTCTTTTAGGCTTTGTCTTCCCAGTGATGTGGTACTATGCTACAGTTCTGTATTTTGGAAATTACTATCGCAAGGATCCAAGGGAGCGAGCAGGACTGGCTGCCTCTGCAATTGCTGCACTAGCTTGTTCTGTCGTGCTGTTGGTCATAGCATTGTTTCGGATATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.31

Weight (kDa)

7.65

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060
fragaria_vesca	FvH4_1g08050 FvH4_1g08050 FvH4_1g08050
malus_domestica	MD02G1085200.v1.1 MD15G1212300.v1.1
prunus_persica	Prupe.7G204400_v2.0.a1 Prupe.7G204400_v2.0.a1
pyrus_communis	pycom02g06800 pycom15g18860
rosa_chinensis	RchiOBHm_Chr2g0094101
rosa_laevigata	RLG00000016455
rosa_multiflora	Rmu_ssc0000149.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147480
rosa_rugosa	Rorug02G0040900
rosa_samantha	Rh2AG088500 Rh2BG088600 Rh2CG091000 Rh2DG087600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	138
AccB7I	CCANNNNNTGG	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	152
AciI	CCGC	1 cut(s)	222
AclWI	GGATC	5 cut(s)	12, 48, 128, 311, 324
AfaI	GTAC	2 cut(s)	194, 275
AfiI	CCNNNNNNNGG	4 cut(s)	143, 162, 163, 215
AluBI	AGCT	3 cut(s)	46, 205, 365
AluI	AGCT	3 cut(s)	46, 205, 365
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	5 cut(s)	12, 48, 128, 311, 324
AlwNI	CAGNNNCTG	2 cut(s)	128, 137
ApeKI	GCWGC	5 cut(s)	128, 202, 219, 341, 356
BamHI	GGATCC	1 cut(s)	316
BbsI	GAAGAC	1 cut(s)	250
BbvI	GCAGC	5 cut(s)	115, 206, 214, 328, 343
BccI	CCATC	2 cut(s)	91, 225
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	3 cut(s)	47, 362, 409
BfmI	CTRYAG	2 cut(s)	129, 282
BfuAI	ACCTGC	1 cut(s)	138
BisI	GCNGC	5 cut(s)	129, 203, 220, 342, 357
BlsI	GCNGC	5 cut(s)	130, 204, 221, 343, 358
BmiI	GGNNCC	1 cut(s)	318
BmrI	ACTGGG	1 cut(s)	257
BmsI	GCATC	2 cut(s)	115, 157
BmuI	ACTGGG	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	4 cut(s)	143, 162, 163, 215
Bse1I	ACTGG	2 cut(s)	263, 342
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	3 cut(s)	172, 195, 236
BseLI	CCNNNNNNNGG	4 cut(s)	143, 162, 163, 215
BseNI	ACTGG	2 cut(s)	263, 342
BseRI	GAGGAG	1 cut(s)	49
BseXI	GCAGC	5 cut(s)	115, 206, 214, 328, 343
BsgI	GTGCAG	1 cut(s)	342
BslI	CCNNNNNNNGG	4 cut(s)	143, 162, 163, 215
BsmAI	GTCTC	1 cut(s)	73
Bso31I	GGTCTC	1 cut(s)	73
Bsp143I	GATC	4 cut(s)	4, 53, 133, 316
BspACI	CCGC	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	318
BspMAI	CTGCAG	1 cut(s)	133
BspMI	ACCTGC	1 cut(s)	138
BspPI	GGATC	5 cut(s)	12, 48, 128, 311, 324
BspTNI	GGTCTC	1 cut(s)	73
BsrI	ACTGG	2 cut(s)	263, 342
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	4 cut(s)	4, 53, 133, 316
BssNAI	GTATAC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	320
Bst1107I	GTATAC	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	286
BstAPI	GCANNNNNTGC	2 cut(s)	125, 356
BstC8I	GCNNGC	2 cut(s)	117, 330
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	3 cut(s)	172, 195, 236
BstKTI	GATC	4 cut(s)	7, 56, 136, 319
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	4 cut(s)	4, 53, 133, 316
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 219, 338, 347, 356, 362
BstSFI	CTRYAG	2 cut(s)	129, 282
BstV1I	GCAGC	5 cut(s)	115, 206, 214, 328, 343
BstV2I	GAAGAC	1 cut(s)	250
BstX2I	RGATCY	3 cut(s)	53, 133, 316
BstXI	CCANNNNNNTGG	1 cut(s)	270
BstYI	RGATCY	3 cut(s)	53, 133, 316
BstZ17I	GTATAC	1 cut(s)	153
BtsCI	GGATG	3 cut(s)	172, 195, 236
BtsIMutI	CAGTG	1 cut(s)	270
BveI	ACCTGC	1 cut(s)	138
Cac8I	GCNNGC	2 cut(s)	117, 330
CaiI	CAGNNNCTG	2 cut(s)	128, 137
Csp6I	GTAC	2 cut(s)	193, 274
CviAII	CATG	1 cut(s)	210
CviJI	RGCY	7 cut(s)	46, 89, 205, 219, 252, 341, 365
CviKI_1	RGCY	7 cut(s)	46, 89, 205, 219, 252, 341, 365
CviQI	GTAC	2 cut(s)	193, 274
DpnI	GATC	4 cut(s)	6, 55, 135, 318
DpnII	GATC	4 cut(s)	4, 53, 133, 316
DraI	TTTAAA	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	73
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	1 cut(s)	213
FaiI	YATR	4 cut(s)	153, 211, 279, 389
FatI	CATG	1 cut(s)	209
FauI	CCCGC	1 cut(s)	215
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	5 cut(s)	129, 203, 220, 342, 357
FokI	GGATG	3 cut(s)	179, 202, 243
Fsp4HI	GCNGC	5 cut(s)	129, 203, 220, 342, 357
FspBI	CTAG	3 cut(s)	47, 362, 409
GluI	GCNGC	5 cut(s)	129, 203, 220, 342, 357
Hin1II	CATG	1 cut(s)	213
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	2 cut(s)	64, 402
Hpy188III	TCNNGA	2 cut(s)	137, 164
Hpy8I	GTNNAC	1 cut(s)	153
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	4 cut(s)	131, 170, 350, 359
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 219, 338, 347, 356, 362
Hsp92II	CATG	1 cut(s)	213
Kzo9I	GATC	4 cut(s)	4, 53, 133, 316
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	6 cut(s)	133, 150, 171, 276, 318, 323
Lsp1109I	GCAGC	5 cut(s)	115, 206, 214, 328, 343
LweI	GCATC	2 cut(s)	115, 157
MaeI	CTAG	3 cut(s)	47, 362, 409
MalI	GATC	4 cut(s)	6, 55, 135, 318
MboI	GATC	4 cut(s)	4, 53, 133, 316
MboII	GAAGA	1 cut(s)	250
MfeI	CAATTG	1 cut(s)	351
MflI	RGATCY	3 cut(s)	53, 133, 316
MluCI	AATT	3 cut(s)	159, 301, 351
MnlI	CCTC	5 cut(s)	16, 67, 70, 166, 355
MseI	TTAA	1 cut(s)	108
MunI	CAATTG	1 cut(s)	351
MwoI	GCNNNNNNNGC	6 cut(s)	125, 219, 338, 347, 356, 362
NdeII	GATC	4 cut(s)	4, 53, 133, 316
NlaIII	CATG	1 cut(s)	213
NlaIV	GGNNCC	1 cut(s)	318
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	5 cut(s)	130, 204, 221, 343, 358
PspN4I	GGNNCC	1 cut(s)	318
PstI	CTGCAG	1 cut(s)	133
PstNI	CAGNNNCTG	2 cut(s)	128, 137
PsuI	RGATCY	3 cut(s)	53, 133, 316
RsaI	GTAC	2 cut(s)	194, 275
RsaNI	GTAC	2 cut(s)	193, 274
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	5 cut(s)	129, 203, 220, 342, 357
Sau3AI	GATC	4 cut(s)	4, 53, 133, 316
SetI	ASST	5 cut(s)	42, 48, 152, 207, 367
SfaNI	GCATC	2 cut(s)	115, 157
SfcI	CTRYAG	2 cut(s)	129, 282
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	3 cut(s)	159, 301, 351
SsiI	CCGC	1 cut(s)	222
SspMI	CTAG	3 cut(s)	47, 362, 409
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	1 cut(s)	286
TasI	AATT	3 cut(s)	159, 301, 351
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	270
TseI	GCWGC	5 cut(s)	128, 202, 219, 341, 356
TspDTI	ATGAA	1 cut(s)	171
TspRI	CASTG	1 cut(s)	270
Van91I	CCANNNNNTGG	1 cut(s)	215
XagI	CCTNNNNNAGG	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	152
XspI	CTAG	3 cut(s)	47, 362, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.