Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005608

Physical Location & Seq

Genomic Coordinates Forward (+)

4251147 .. 4253467

Gene Structure 2321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08050.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGATCAAAAAGGTTCGTCAGAAGATTTGAGAACCGACGTTGAGTTAGTGAGATCATCCTCTGAAAAGCAACTTTTGAGACCATCAGCTCGATATTATTCAGTTTTTAAAGGGCAAGCAACAGATGTGGATCCTGAAAAAGGAAGATACACCCTTATTAAAGATGCAGAGGACTTCCCATCAGGAATATACGAGAAACAGCTTCCATGCTTTGGCTGTGGGATAGGATGGTTTTCATTTCTTTTAGGCTTTGCCTTCCCATTGATGTGGTACTATGCTACGGTTCTCTACTTTGGAAATTACTATCGCAAAGATCCTAGGGAGCGAGCTGGACTCGCAGCCTCTGCAATTTGTGCACTGGTTTGTTCTGTTGTGTTGGTGGTCATACTACTGTTTCTGATATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.31

Weight (kDa)

6.25

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060
fragaria_vesca	FvH4_1g08050 FvH4_1g08050 FvH4_1g08050
malus_domestica	MD02G1085200.v1.1 MD15G1212300.v1.1
prunus_persica	Prupe.7G204400_v2.0.a1 Prupe.7G204400_v2.0.a1
pyrus_communis	pycom02g06800 pycom15g18860
rosa_chinensis	RchiOBHm_Chr2g0094101
rosa_laevigata	RLG00000016455
rosa_multiflora	Rmu_ssc0000149.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147480
rosa_rugosa	Rorug02G0040900
rosa_samantha	Rh2AG088500 Rh2BG088600 Rh2CG091000 Rh2DG087600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	212
AclWI	GGATC	4 cut(s)	12, 125, 138, 308
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	140, 212
AluBI	AGCT	3 cut(s)	89, 202, 329
AluI	AGCT	3 cut(s)	89, 202, 329
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	73
Alw44I	GTGCAC	1 cut(s)	354
AlwI	GGATC	4 cut(s)	12, 125, 138, 308
AlwNI	CAGNNNCTG	1 cut(s)	344
ApaLI	GTGCAC	1 cut(s)	354
ApeKI	GCWGC	1 cut(s)	338
AspA2I	CCTAGG	1 cut(s)	317
AvrII	CCTAGG	1 cut(s)	317
BaeGI	GKGCMC	1 cut(s)	358
BamHI	GGATCC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	3 cut(s)	91, 187, 222
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	2 cut(s)	318, 406
BisI	GCNGC	1 cut(s)	339
BlnI	CCTAGG	1 cut(s)	317
BlsI	GCNGC	1 cut(s)	340
BmiI	GGNNCC	1 cut(s)	132
BmsI	GCATC	1 cut(s)	154
BplI	GAGNNNNNCTC	2 cut(s)	318, 350
BsaBI	GATNNNNATC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 212
Bse1I	ACTGG	1 cut(s)	363
Bse8I	GATNNNNATC	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	2 cut(s)	56, 233
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	140, 212
BseNI	ACTGG	1 cut(s)	363
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	140, 212
BsmAI	GTCTC	1 cut(s)	73
Bso31I	GGTCTC	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	4 cut(s)	4, 53, 130, 313
BspLI	GGNNCC	1 cut(s)	132
BspPI	GGATC	4 cut(s)	12, 125, 138, 308
BspTNI	GGTCTC	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	363
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	4 cut(s)	4, 53, 130, 313
BssT1I	CCWWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	283, 393
BstAPI	GCANNNNNTGC	2 cut(s)	344, 353
BstC8I	GCNNGC	2 cut(s)	117, 327
BstENI	CCTNNNNNAGG	1 cut(s)	138
BstF5I	GGATG	2 cut(s)	56, 233
BstKTI	GATC	4 cut(s)	7, 56, 133, 316
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	4 cut(s)	4, 53, 130, 313
BstMWI	GCNNNNNNNGC	3 cut(s)	335, 344, 353
BstSLI	GKGCMC	1 cut(s)	358
BstV1I	GCAGC	1 cut(s)	350
BstX2I	RGATCY	2 cut(s)	130, 313
BstXI	CCANNNNNNTGG	1 cut(s)	267
BstYI	RGATCY	2 cut(s)	130, 313
BtsCI	GGATG	2 cut(s)	56, 233
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	2 cut(s)	117, 327
CaiI	CAGNNNCTG	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	271
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	1 cut(s)	207
CviJI	RGCY	6 cut(s)	89, 202, 216, 249, 329, 341
CviKI_1	RGCY	6 cut(s)	89, 202, 216, 249, 329, 341
CviQI	GTAC	1 cut(s)	271
DpnI	GATC	4 cut(s)	6, 55, 132, 315
DpnII	GATC	4 cut(s)	4, 53, 130, 313
DraI	TTTAAA	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	317
Eco31I	GGTCTC	1 cut(s)	73
EcoNI	CCTNNNNNAGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	1 cut(s)	210
FaiI	YATR	4 cut(s)	190, 208, 276, 386
FatI	CATG	1 cut(s)	206
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	2 cut(s)	43, 240
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	2 cut(s)	318, 406
GluI	GCNGC	1 cut(s)	339
Hin1II	CATG	1 cut(s)	210
HinfI	GANTC	1 cut(s)	333
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	3 cut(s)	22, 64, 399
Hpy188III	TCNNGA	2 cut(s)	134, 183
Hpy8I	GTNNAC	1 cut(s)	356
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	2 cut(s)	283, 393
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	3 cut(s)	167, 347, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	335, 344, 353
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	210
Kzo9I	GATC	4 cut(s)	4, 53, 130, 313
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	4 cut(s)	147, 168, 315, 344
Lsp1109I	GCAGC	1 cut(s)	350
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	2 cut(s)	318, 406
MaeII	ACGT	1 cut(s)	39
MalI	GATC	4 cut(s)	6, 55, 132, 315
MboI	GATC	4 cut(s)	4, 53, 130, 313
MboII	GAAGA	2 cut(s)	35, 156
MflI	RGATCY	2 cut(s)	130, 313
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	2 cut(s)	298, 348
MlyI	GAGTC	1 cut(s)	327
MnlI	CCTC	3 cut(s)	70, 163, 352
MseI	TTAA	2 cut(s)	108, 159
MslI	CAYNNNNRTG	1 cut(s)	265
MwoI	GCNNNNNNNGC	3 cut(s)	335, 344, 353
NdeII	GATC	4 cut(s)	4, 53, 130, 313
NlaIII	CATG	1 cut(s)	210
NlaIV	GGNNCC	1 cut(s)	132
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	340
PleI	GAGTC	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	2 cut(s)	130, 313
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	265
SaqAI	TTAA	2 cut(s)	108, 159
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	4 cut(s)	4, 53, 130, 313
SchI	GAGTC	1 cut(s)	327
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	5 cut(s)	16, 42, 91, 204, 331
SfaNI	GCATC	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	265
Sse9I	AATT	2 cut(s)	298, 348
SspMI	CTAG	2 cut(s)	318, 406
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	283, 393
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	91
TasI	AATT	2 cut(s)	298, 348
Tru1I	TTAA	2 cut(s)	108, 159
Tru9I	TTAA	2 cut(s)	108, 159
TscAI	CASTG	1 cut(s)	363
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	363
Van91I	CCANNNNNTGG	1 cut(s)	212
VneI	GTGCAC	1 cut(s)	354
XagI	CCTNNNNNAGG	1 cut(s)	138
XmaJI	CCTAGG	1 cut(s)	317
XspI	CTAG	2 cut(s)	318, 406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.