AT4G26080

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010053
Physical Location & Seq
Reverse (-)
13219915 .. 13222376
2462 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26080.1

Sequence Viewer

Length: 1305 bp
ATGGAGGAAGTATCTCCGGCGATCGCAGGTCCTTTCAGGCCATTCTCCGAAACCCAGATGGATTTCACCGGGATCAGATTGGGTAAAGGTTACTGCAATAACCAATACTCAAATCAAGATTCCGAGAACGGAGATCTAATGGTTTCGTTACCGGAGACTTCATCATGCTCTGTTTCTGGGTCACATGGTTCTGAATCTAGGAAAGTTTTGATTTCTCGGATCAATTCTCCTAATTTAAACATGAAGGAATCAGCAGCTGCTGATATAGTCGTCGTTGATATCTCCGCCGGAGATGAGATCAACGGCTCAGATATTACTAGCGAGAAGAAGATGATCAGCAGAACAGAGAGTAGGAGTTTGTTTGAATTCAAGAGTGTGCCTTTGTATGGTTTTACTTCGATTTGTGGAAGAAGACCTGAGATGGAAGATGCTGTTTCGACTATACCAAGATTCCTTCAATCTTCCTCTGGTTCGATGTTAGATGGTCGGTTTGATCCTCAATCCGCCGCTCATTTCTTCGGTGTTTACGACGGCCATGGCGGTTCTCAGGTAGCGAACTATTGTAGAGAGAGGATGCATTTGGCTTTGGCGGAGGAGATAGCTAAGGAGAAACCGATGCTCTGCGATGGTGATACGTGGCTGGAGAAGTGGAAGAAAGCTCTTTTCAACTCGTTCCTGAGAGTTGACTCGGAGATTGAGTCAGTTGCGCCGGAGACGGTTGGGTCAACGTCGGTGGTTGCCGTTGTTTTCCCGTCTCACATCTTCGTCGCTAACTGCGGTGACTCTAGAGCCGTTCTTTGCCGCGGCAAAACTGCACTTCCATTATCCGTTGACCATAAACCGGATAGAGAAGATGAAGCTGCGAGGATTGAAGCCGCAGGAGGGAAAGTGATTCAGTGGAATGGAGCTCGTGTTTTCGGTGTTCTCGCCATGTCGAGATCCATTGGCGATAGATACTTGAAACCATCCATCATTCCTGATCCGGAAGTGACGGCTGTGAAGAGAGTAAAAGAAGATGATTGTCTGATTTTGGCGAGTGACGGGGTTTGGGATGTAATGACGGATGAAGAAGCGTGTGAGATGGCAAGGAAGCGGATTCTCTTGTGGCACAAGAAAAACGCGGTGGCTGGGGATGCATCGTTGCTCGCGGATGAGCGGAGAAAGGAAGGGAAAGATCCTGCGGCGATGTCCGCGGCTGAGTATTTGTCAAAGCTGGCGATACAGAGAGGAAGCAAAGACAACATAAGTGTGGTGGTGGTTGATTTGAAGCCTCGGAGGAAACTCAAGAGCAAACCCTTGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010109 GO:0010119 GO:0010205 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022622 GO:0023051 GO:0023057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033673 GO:0033993 GO:0036211 GO:0042221 GO:0042325 GO:0042326 GO:0042548 GO:0042578 GO:0043086 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043467 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045936 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0097305 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902456 GO:1905156 GO:1905957 GO:1905958
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04931 map04016 map04075 map04931
Pfam Domains
Protein Families
PP2C

Protein Analysis

434

Amino Acids

47.51

Weight (kDa)

5.81

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 129 - 415 1.4e-70 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 721
Acc36I ACCTGC 1 cut(s) 17
AccBSI CCGCTC 2 cut(s) 509, 1156
AccII CGCG 4 cut(s) 804, 1121, 1148, 1193
AccIII TCCGGA 1 cut(s) 982
AclWI GGATC 6 cut(s) 80, 227, 488, 933, 974, 1169
AcoI YGGCCR 1 cut(s) 532
AcsI RAATTY 1 cut(s) 365
AfiI CCNNNNNNNGG 3 cut(s) 386, 841, 882
AgsI TTSAA 8 cut(s) 365, 370, 458, 667, 872, 961, 1267, 1300
AluBI AGCT 6 cut(s) 257, 602, 659, 860, 908, 1213
AluI AGCT 6 cut(s) 257, 602, 659, 860, 908, 1213
Alw21I GWGCWC 1 cut(s) 910
Alw26I GTCTC 3 cut(s) 149, 707, 759
AlwI GGATC 6 cut(s) 80, 227, 488, 933, 974, 1169
AlwNI CAGNNNCTG 2 cut(s) 257, 260
Aor13HI TCCGGA 1 cut(s) 982
AoxI GGCC 2 cut(s) 38, 532
ApeKI GCWGC 3 cut(s) 254, 257, 860
ApoI RAATTY 1 cut(s) 365
AsiSI GCGATCGC 1 cut(s) 24
AspLEI GCGC 1 cut(s) 709
AspS9I GGNCC 1 cut(s) 29
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 3 cut(s) 58, 641, 791
AvaII GGWCC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 910
BauI CACGAG 1 cut(s) 909
BbsI GAAGAC 1 cut(s) 418
Bbv12I GWGCWC 1 cut(s) 910
BbvI GCAGC 3 cut(s) 244, 266, 847
BccI CCATC 7 cut(s) 52, 415, 476, 620, 973, 977, 1075
BceAI ACGGC 5 cut(s) 319, 547, 725, 776, 1008
BclI TGATCA 1 cut(s) 333
BcnI CCSGG 1 cut(s) 70
BcoDI GTCTC 3 cut(s) 149, 707, 759
BfaI CTAG 3 cut(s) 198, 318, 786
BfuAI ACCTGC 1 cut(s) 17
BglII AGATCT 1 cut(s) 133
BisI GCNGC 9 cut(s) 255, 258, 507, 802, 805, 861, 876, 1182, 1194
BlsI GCNGC 9 cut(s) 256, 259, 508, 803, 806, 862, 877, 1183, 1195
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 5 cut(s) 418, 564, 606, 1123, 1145
BpiI GAAGAC 1 cut(s) 418
BpmI CTGGAG 1 cut(s) 662
Bpu10I CCTNAGC 1 cut(s) 603
BpuEI CTTGAG 1 cut(s) 1268
BpuMI CCSGG 1 cut(s) 70
BsaAI YACGTR 1 cut(s) 636
BsaJI CCNNGG 4 cut(s) 535, 802, 1191, 1271
BsaWI WCCGGW 3 cut(s) 151, 841, 982
BsaXI ACNNNNNCTCC 6 cut(s) 683, 713, 873, 897, 903, 927
Bsc4I CCNNNNNNNGG 3 cut(s) 386, 841, 882
BseAI TCCGGA 1 cut(s) 982
BseDI CCNNGG 4 cut(s) 535, 802, 1191, 1271
BseGI GGATG 6 cut(s) 579, 965, 1057, 1069, 1138, 1156
BseLI CCNNNNNNNGG 3 cut(s) 386, 841, 882
BseMII CTCAG 5 cut(s) 321, 408, 560, 668, 1188
BseRI GAGGAG 1 cut(s) 608
BseXI GCAGC 3 cut(s) 244, 266, 847
BseYI CCCAGC 1 cut(s) 1127
BsgI GTGCAG 1 cut(s) 798
Bsh1236I CGCG 4 cut(s) 804, 1121, 1148, 1193
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 2 cut(s) 40, 534
BsiEI CGRYCG 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 910
BsiSI CCGG 7 cut(s) 17, 69, 152, 288, 710, 842, 983
BslI CCNNNNNNNGG 3 cut(s) 386, 841, 882
BsmAI GTCTC 3 cut(s) 149, 707, 759
BsmBI CGTCTC 2 cut(s) 707, 759
BsnI GGCC 2 cut(s) 40, 534
Bsp1286I GDGCHC 1 cut(s) 910
Bsp13I TCCGGA 1 cut(s) 982
Bsp19I CCATGG 1 cut(s) 535
BspANI GGCC 2 cut(s) 40, 534
BspCNI CTCAG 5 cut(s) 320, 409, 559, 669, 1189
BspEI TCCGGA 1 cut(s) 982
BspFNI CGCG 4 cut(s) 804, 1121, 1148, 1193
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 6 cut(s) 80, 227, 488, 933, 974, 1169
BsrBI CCGCTC 2 cut(s) 509, 1156
BssECI CCNNGG 4 cut(s) 535, 802, 1191, 1271
BssSI CACGAG 1 cut(s) 909
BssT1I CCWWGG 1 cut(s) 535
Bst2BI CACGAG 1 cut(s) 909
Bst4CI ACNGT 1 cut(s) 718
Bst6I CTCTTC 1 cut(s) 995
BstBAI YACGTR 1 cut(s) 636
BstC8I GCNNGC 2 cut(s) 1146, 1215
BstDEI CTNAG 6 cut(s) 307, 417, 546, 603, 677, 1197
BstDSI CCRYGG 3 cut(s) 535, 802, 1191
BstF5I GGATG 6 cut(s) 579, 965, 1057, 1069, 1138, 1156
BstFNI CGCG 4 cut(s) 804, 1121, 1148, 1193
BstHHI GCGC 1 cut(s) 709
BstMAI GTCTC 3 cut(s) 149, 707, 759
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 2 cut(s) 1133, 1190
BstSCI CCNGG 1 cut(s) 68
BstUI CGCG 4 cut(s) 804, 1121, 1148, 1193
BstV1I GCAGC 3 cut(s) 244, 266, 847
BstV2I GAAGAC 1 cut(s) 418
BstX2I RGATCY 3 cut(s) 133, 938, 1174
BstYI RGATCY 3 cut(s) 133, 938, 1174
BsuRI GGCC 2 cut(s) 40, 534
BtgI CCRYGG 3 cut(s) 535, 802, 1191
BtgZI GCGATG 2 cut(s) 639, 1199
BtsCI GGATG 6 cut(s) 579, 965, 1057, 1069, 1138, 1156
BtsIMutI CAGTG 1 cut(s) 902
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 2 cut(s) 1146, 1215
CaiI CAGNNNCTG 2 cut(s) 257, 260
CfoI GCGC 1 cut(s) 709
Cfr13I GGNCC 1 cut(s) 29
Cfr42I CCGCGG 2 cut(s) 805, 1194
CspCI CAANNNNNGTGG 2 cut(s) 714, 749
CviAII CATG 5 cut(s) 165, 185, 241, 536, 931
DdeI CTNAG 6 cut(s) 307, 417, 546, 603, 677, 1197
DraI TTTAAA 1 cut(s) 237
DrdI GACNNNNNNGTC 1 cut(s) 721
DseDI GACNNNNNNGTC 1 cut(s) 721
EaeI YGGCCR 1 cut(s) 532
Eam1104I CTCTTC 1 cut(s) 995
EarI CTCTTC 1 cut(s) 995
EciI GGCGGA 3 cut(s) 274, 493, 605
Ecl136II GAGCTC 1 cut(s) 908
Eco130I CCWWGG 1 cut(s) 535
Eco24I GRGCYC 1 cut(s) 910
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 29
Eco53kI GAGCTC 1 cut(s) 908
EcoICRI GAGCTC 1 cut(s) 908
EcoO109I RGGNCCY 1 cut(s) 29
EcoRI GAATTC 1 cut(s) 365
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 535
EcoT22I ATGCAT 2 cut(s) 579, 1138
EcoT38I GRGCYC 1 cut(s) 910
ErhI CCWWGG 1 cut(s) 535
Esp3I CGTCTC 2 cut(s) 707, 759
FaeI CATG 5 cut(s) 168, 188, 244, 539, 934
FatI CATG 5 cut(s) 164, 184, 240, 535, 930
FbaI TGATCA 1 cut(s) 333
Fnu4HI GCNGC 9 cut(s) 255, 258, 507, 802, 805, 861, 876, 1182, 1194
FokI GGATG 6 cut(s) 586, 952, 1064, 1076, 1145, 1163
FriOI GRGCYC 1 cut(s) 910
Fsp4HI GCNGC 9 cut(s) 255, 258, 507, 802, 805, 861, 876, 1182, 1194
FspBI CTAG 3 cut(s) 198, 318, 786
GlaI GCGC 1 cut(s) 708
GluI GCNGC 9 cut(s) 255, 258, 507, 802, 805, 861, 876, 1182, 1194
GsaI CCCAGC 1 cut(s) 1131
GsuI CTGGAG 1 cut(s) 662
HaeIII GGCC 2 cut(s) 40, 534
HapII CCGG 7 cut(s) 17, 69, 152, 288, 710, 842, 983
HhaI GCGC 1 cut(s) 709
Hin1II CATG 5 cut(s) 168, 188, 244, 539, 934
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HincII GTYRAC 3 cut(s) 685, 726, 832
HindII GTYRAC 3 cut(s) 685, 726, 832
HinfI GANTC 9 cut(s) 119, 194, 248, 450, 686, 698, 782, 892, 1096
HpaII CCGG 7 cut(s) 17, 69, 152, 288, 710, 842, 983
HphI GGTGA 3 cut(s) 58, 641, 791
Hpy166II GTNNAC 4 cut(s) 526, 685, 726, 832
Hpy188I TCNGA 9 cut(s) 49, 77, 124, 193, 219, 310, 691, 1026, 1275
Hpy188III TCNNGA 8 cut(s) 116, 370, 676, 786, 936, 977, 983, 1285
Hpy8I GTNNAC 4 cut(s) 526, 685, 726, 832
Hpy99I CGWCG 4 cut(s) 275, 533, 733, 770
HpyAV CCTTC 3 cut(s) 238, 464, 1160
HpyCH4III ACNGT 1 cut(s) 718
HpyCH4IV ACGT 2 cut(s) 635, 728
HpyCH4V TGCA 4 cut(s) 96, 577, 815, 1136
HpyF10VI GCNNNNNNNGC 2 cut(s) 1133, 1190
HpyF3I CTNAG 6 cut(s) 307, 417, 546, 603, 677, 1197
HpySE526I ACGT 2 cut(s) 635, 728
Hsp92II CATG 5 cut(s) 168, 188, 244, 539, 934
HspAI GCGC 1 cut(s) 707
Kpn2I TCCGGA 1 cut(s) 982
Ksp22I TGATCA 1 cut(s) 333
KspI CCGCGG 2 cut(s) 805, 1194
LmnI GCTCC 1 cut(s) 905
Lsp1109I GCAGC 3 cut(s) 244, 266, 847
LweI GCATC 5 cut(s) 418, 564, 606, 1123, 1145
MaeI CTAG 3 cut(s) 198, 318, 786
MaeII ACGT 2 cut(s) 635, 728
MaeIII GTNAC 6 cut(s) 89, 147, 180, 779, 988, 1037
MbiI CCGCTC 2 cut(s) 509, 1156
MflI RGATCY 3 cut(s) 133, 938, 1174
MhlI GDGCHC 1 cut(s) 910
MluCI AATT 3 cut(s) 223, 232, 365
MlyI GAGTC 3 cut(s) 680, 707, 776
MnlI CCTC 9 cut(s) 475, 507, 564, 586, 858, 875, 1220, 1269, 1281
Mph1103I ATGCAT 2 cut(s) 579, 1138
MroI TCCGGA 1 cut(s) 982
MseI TTAA 1 cut(s) 236
MslI CAYNNNNRTG 1 cut(s) 1247
MspA1I CMGCKG 3 cut(s) 257, 804, 1193
MspI CCGG 7 cut(s) 17, 69, 152, 288, 710, 842, 983
MspR9I CCNGG 1 cut(s) 70
MvnI CGCG 4 cut(s) 804, 1121, 1148, 1193
MwoI GCNNNNNNNGC 2 cut(s) 1133, 1190
NciI CCSGG 1 cut(s) 70
NcoI CCATGG 1 cut(s) 535
NlaIII CATG 5 cut(s) 168, 188, 244, 539, 934
NmuCI GTSAC 4 cut(s) 180, 779, 988, 1037
NsiI ATGCAT 2 cut(s) 579, 1138
PcsI WCGNNNNNNNCGW 1 cut(s) 525
PfeI GAWTC 6 cut(s) 119, 194, 248, 450, 892, 1096
PkrI GCNGC 9 cut(s) 256, 259, 508, 803, 806, 862, 877, 1183, 1195
Ple19I CGATCG 1 cut(s) 24
PleI GAGTC 3 cut(s) 680, 706, 776
PpsI GAGTC 3 cut(s) 680, 706, 776
Ppu21I YACGTR 1 cut(s) 636
PpuMI RGGWCCY 1 cut(s) 29
Psp124BI GAGCTC 1 cut(s) 910
Psp5II RGGWCCY 1 cut(s) 29
PspFI CCCAGC 1 cut(s) 1127
PspPI GGNCC 1 cut(s) 29
PspPPI RGGWCCY 1 cut(s) 29
PstNI CAGNNNCTG 2 cut(s) 257, 260
PsuI RGATCY 3 cut(s) 133, 938, 1174
PvuI CGATCG 1 cut(s) 24
PvuII CAGCTG 1 cut(s) 257
RgaI GCGATCGC 1 cut(s) 24
RseI CAYNNNNRTG 1 cut(s) 1247
SacI GAGCTC 1 cut(s) 910
SacII CCGCGG 2 cut(s) 805, 1194
SaqAI TTAA 1 cut(s) 236
SatI GCNGC 9 cut(s) 255, 258, 507, 802, 805, 861, 876, 1182, 1194
Sau96I GGNCC 1 cut(s) 29
SchI GAGTC 3 cut(s) 680, 707, 776
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 1 cut(s) 910
SfaAI GCGATCGC 1 cut(s) 24
SfaNI GCATC 5 cut(s) 418, 564, 606, 1123, 1145
Sfr303I CCGCGG 2 cut(s) 805, 1194
SgfI GCGATCGC 1 cut(s) 24
SgrBI CCGCGG 2 cut(s) 805, 1194
SinI GGWCC 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 1247
SmlI CTYRAG 1 cut(s) 1283
SmoI CTYRAG 1 cut(s) 1283
Sse9I AATT 3 cut(s) 223, 232, 365
SspMI CTAG 3 cut(s) 198, 318, 786
SstI GAGCTC 1 cut(s) 910
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 535
TaaI ACNGT 1 cut(s) 718
TaiI ACGT 2 cut(s) 638, 731
TaqI TCGA 4 cut(s) 398, 437, 473, 935
TasI AATT 3 cut(s) 223, 232, 365
TauI GCSGC 6 cut(s) 509, 804, 807, 878, 1184, 1196
TfiI GAWTC 6 cut(s) 119, 194, 248, 450, 892, 1096
Tru1I TTAA 1 cut(s) 236
Tru9I TTAA 1 cut(s) 236
TscAI CASTG 1 cut(s) 902
TseFI GTSAC 4 cut(s) 180, 779, 988, 1037
TseI GCWGC 3 cut(s) 254, 257, 860
Tsp45I GTSAC 4 cut(s) 180, 779, 988, 1037
TspDTI ATGAA 4 cut(s) 150, 257, 870, 1080
TspGWI ACGGA 3 cut(s) 144, 817, 1076
TspRI CASTG 1 cut(s) 902
VpaK11BI GGWCC 1 cut(s) 29
XapI RAATTY 1 cut(s) 365
XbaI TCTAGA 1 cut(s) 785
XspI CTAG 3 cut(s) 198, 318, 786
Zsp2I ATGCAT 2 cut(s) 579, 1138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.