Rh2BG088300

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0010053
Physical Location & Seq
Forward (+)
6898371 .. 6901682
3312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG088300.1

Sequence Viewer

Length: 1017 bp
ATGGAAGACGTAGCTCAAGCAGTTGCAGTTCCATATAGGCTAGGTAATTTGATTCATGAGGAATCAGCAGTGAAAACCCAAATGGAAATCACTGGTCTCAAGCTAATATCAAATACATCAACCTTGTTATCCAATACTTCTTCAAAACCAAGTCTACCATGTGAGTCCATTTCTTGTGGAAATCAAAGTTACAGAAGCAAAAATCCACAGGACGAAAATAGAGATCTGATTTCTGGTGAAACCATTAATTGGGGAAGTAAGGAGTGCAAGTTCATGCCTTTATGCAATCGGGTTCTAGGTAGTTCATGCTTCAAATCTTTGGCTCATGATGAGGGTGAGATTTGCAATGGATCTAACACTTGTGATGCATCCACCACTTCGGTGAATCGGGCAAAGAAAATTTGTAGGACAAGCTCCAATGGGAAGGTTTTCGATTTGGATCGTGCACCCTTTTGGGGATACACCTCAATCCGTGGAGGGAGACCAGAGATGGAAGATGATGTTGCAGTTATTCCTAGACTTTTGCAGATTCCTATTCAAATGTTAGTGGATGATTCTGACATGAGCCAAAACCCAAGTCAATTAACTGCCCATTTCTTTGGAGTTTATGATGGACATGGGGGTTGTCAGGTTGCTAATTACTGTCGTGAACGAGTGCATTCAGCTTTGGTTGAAGAGATTGAAATTACTAAAGCAGGCTTGAATGAAAGCACTGGTGAGTCTTTGCAGGAGCAGTGGAAGGAGGCCTTCACCAATTGCTTCATAAAAGTTGATGCTGAGGTTGGAGGAGCTCCCAAAGGCACACATTCAAGCAACACTAGTGCTTCTGAGGATTCTCTTAAACCTATTGCTCCTGAAACTGTTGGTTCTACAGCTGTAGTCGTCGTTGTTTGTCCAACCCATATTATAGTAGCAAACTGTGGTGATTCGAGAGCAGTATTGTACCGCGGAAGAGTGGCGATGCCATTGTCAGTAGATCACAAAGTAAGGCCTCACAATATGTCTATCTTTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010109 GO:0010119 GO:0010205 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022622 GO:0023051 GO:0023057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033673 GO:0033993 GO:0036211 GO:0042221 GO:0042325 GO:0042326 GO:0042548 GO:0042578 GO:0043086 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043467 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045936 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0097305 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902456 GO:1905156 GO:1905957 GO:1905958
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04931 map04016 map04075 map04931
Pfam Domains
Protein Families
PP2C

Protein Analysis

338

Amino Acids

36.7

Weight (kDa)

5.64

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 185 - 329 1.6e-20 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 249
AccI GTMKAC 1 cut(s) 154
AccII CGCG 1 cut(s) 948
AciI CCGC 2 cut(s) 946, 948
AclWI GGATC 2 cut(s) 358, 447
AcsI RAATTY 1 cut(s) 399
AfaI GTAC 1 cut(s) 944
AfiI CCNNNNNNNGG 2 cut(s) 249, 455
AgsI TTSAA 7 cut(s) 144, 313, 539, 674, 683, 703, 810
AhlI ACTAGT 1 cut(s) 818
AleI CACNNNNGTG 1 cut(s) 380
AloI GAACNNNNNNTCC 2 cut(s) 254, 286
AluBI AGCT 6 cut(s) 14, 103, 414, 665, 791, 875
AluI AGCT 6 cut(s) 14, 103, 414, 665, 791, 875
Alw21I GWGCWC 2 cut(s) 448, 793
Alw26I GTCTC 2 cut(s) 101, 475
Alw44I GTGCAC 1 cut(s) 444
AlwI GGATC 2 cut(s) 358, 447
AoxI GGCC 2 cut(s) 744, 989
ApaLI GTGCAC 1 cut(s) 444
ApoI RAATTY 1 cut(s) 399
ArsI GACNNNNNNTTYG 2 cut(s) 562, 594
AseI ATTAAT 1 cut(s) 246
Asp700I GAANNNNTTC 1 cut(s) 428
AsuHPI GGTGA 6 cut(s) 248, 347, 394, 728, 742, 935
BaeGI GKGCMC 1 cut(s) 448
BanII GRGCYC 1 cut(s) 793
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 2 cut(s) 448, 793
BbvCI CCTCAGC 1 cut(s) 777
BccI CCATC 2 cut(s) 484, 605
BciVI GTATCC 1 cut(s) 452
BcoDI GTCTC 2 cut(s) 101, 475
BcuI ACTAGT 1 cut(s) 818
BfaI CTAG 4 cut(s) 41, 296, 516, 819
BfmI CTRYAG 2 cut(s) 870, 876
BfuI GTATCC 1 cut(s) 452
BglII AGATCT 1 cut(s) 223
BmsI GCATC 4 cut(s) 355, 377, 763, 951
BpiI GAAGAC 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 777
BpuEI CTTGAG 1 cut(s) 83
BsaBI GATNNNNATC 1 cut(s) 438
BsaI GGTCTC 2 cut(s) 101, 475
BsaJI CCNNGG 2 cut(s) 472, 946
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 455
Bse1I ACTGG 2 cut(s) 97, 718
Bse3DI GCAATG 1 cut(s) 352
Bse8I GATNNNNATC 1 cut(s) 438
BseDI CCNNGG 2 cut(s) 472, 946
BseGI GGATG 2 cut(s) 368, 556
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 2 cut(s) 249, 455
BseMI GCAATG 1 cut(s) 352
BseMII CTCAG 2 cut(s) 768, 819
BseNI ACTGG 2 cut(s) 97, 718
BseRI GAGGAG 1 cut(s) 801
BseSI GKGCMC 1 cut(s) 448
Bsh1236I CGCG 1 cut(s) 948
BshFI GGCC 2 cut(s) 746, 991
BsiHKAI GWGCWC 2 cut(s) 448, 793
BslI CCNNNNNNNGG 2 cut(s) 249, 455
BsmAI GTCTC 2 cut(s) 101, 475
BsmI GAATGC 1 cut(s) 658
BsnI GGCC 2 cut(s) 746, 991
Bso31I GGTCTC 2 cut(s) 101, 475
Bsp1286I GDGCHC 2 cut(s) 448, 793
Bsp143I GATC 4 cut(s) 223, 350, 439, 976
BspACI CCGC 2 cut(s) 946, 948
BspANI GGCC 2 cut(s) 746, 991
BspCNI CTCAG 2 cut(s) 769, 820
BspFNI CGCG 1 cut(s) 948
BspHI TCATGA 2 cut(s) 55, 325
BspPI GGATC 2 cut(s) 358, 447
BspTNI GGTCTC 2 cut(s) 101, 475
BsrDI GCAATG 1 cut(s) 352
BsrI ACTGG 2 cut(s) 97, 718
BssECI CCNNGG 2 cut(s) 472, 946
BssMI GATC 4 cut(s) 223, 350, 439, 976
Bst4CI ACNGT 3 cut(s) 644, 862, 920
Bst6I CTCTTC 2 cut(s) 669, 946
BstC8I GCNNGC 1 cut(s) 697
BstDEI CTNAG 2 cut(s) 777, 828
BstDSI CCRYGG 2 cut(s) 472, 946
BstF5I GGATG 2 cut(s) 368, 556
BstFNI CGCG 1 cut(s) 948
BstKTI GATC 4 cut(s) 226, 353, 442, 979
BstMAI GTCTC 2 cut(s) 101, 475
BstMBI GATC 4 cut(s) 223, 350, 439, 976
BstSFI CTRYAG 2 cut(s) 870, 876
BstSLI GKGCMC 1 cut(s) 448
BstUI CGCG 1 cut(s) 948
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 2 cut(s) 223, 350
BstXI CCANNNNNNTGG 1 cut(s) 599
BstYI RGATCY 2 cut(s) 223, 350
BsuI GTATCC 1 cut(s) 452
BsuRI GGCC 2 cut(s) 746, 991
BtgI CCRYGG 2 cut(s) 472, 946
BtgZI GCGATG 1 cut(s) 974
BtsCI GGATG 2 cut(s) 368, 556
BtsI GCAGTG 2 cut(s) 75, 740
BtsIMutI CAGTG 4 cut(s) 75, 90, 711, 740
Cac8I GCNNGC 1 cut(s) 697
CciI TCATGA 2 cut(s) 55, 325
Cfr42I CCGCGG 1 cut(s) 949
Csp6I GTAC 1 cut(s) 943
CviAII CATG 7 cut(s) 56, 159, 274, 306, 326, 562, 617
CviQI GTAC 1 cut(s) 943
DdeI CTNAG 2 cut(s) 777, 828
DpnI GATC 4 cut(s) 225, 352, 441, 978
DpnII GATC 4 cut(s) 223, 350, 439, 976
Eam1104I CTCTTC 2 cut(s) 669, 946
EarI CTCTTC 2 cut(s) 669, 946
Ecl136II GAGCTC 1 cut(s) 791
Eco147I AGGCCT 2 cut(s) 746, 991
Eco24I GRGCYC 1 cut(s) 793
Eco31I GGTCTC 2 cut(s) 101, 475
Eco53kI GAGCTC 1 cut(s) 791
EcoICRI GAGCTC 1 cut(s) 791
EcoT22I ATGCAT 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 793
FaeI CATG 7 cut(s) 59, 162, 277, 309, 329, 565, 620
FalI AAGNNNNNCTT 2 cut(s) 731, 763
FatI CATG 7 cut(s) 55, 158, 273, 305, 325, 561, 616
FblI GTMKAC 1 cut(s) 154
FokI GGATG 2 cut(s) 355, 563
FriOI GRGCYC 1 cut(s) 793
FspBI CTAG 4 cut(s) 41, 296, 516, 819
HaeIII GGCC 2 cut(s) 746, 991
Hin1II CATG 7 cut(s) 59, 162, 277, 309, 329, 565, 620
HinfI GANTC 9 cut(s) 52, 62, 164, 385, 529, 554, 719, 833, 926
HphI GGTGA 6 cut(s) 248, 347, 394, 728, 742, 935
Hpy166II GTNNAC 3 cut(s) 155, 446, 650
Hpy188I TCNGA 3 cut(s) 228, 559, 829
Hpy188III TCNNGA 5 cut(s) 56, 326, 647, 854, 930
Hpy8I GTNNAC 3 cut(s) 155, 446, 650
Hpy99I CGWCG 1 cut(s) 887
HpyAV CCTTC 3 cut(s) 418, 733, 757
HpyCH4III ACNGT 3 cut(s) 644, 862, 920
HpyCH4IV ACGT 1 cut(s) 9
HpyF3I CTNAG 2 cut(s) 777, 828
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 7 cut(s) 59, 162, 277, 309, 329, 565, 620
KspI CCGCGG 1 cut(s) 949
Kzo9I GATC 4 cut(s) 223, 350, 439, 976
LmnI GCTCC 5 cut(s) 419, 730, 788, 796, 856
LpnPI CCDG 9 cut(s) 78, 194, 219, 498, 614, 681, 699, 713, 867
LweI GCATC 4 cut(s) 355, 377, 763, 951
MaeI CTAG 4 cut(s) 41, 296, 516, 819
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 188
MalI GATC 4 cut(s) 225, 352, 441, 978
MboI GATC 4 cut(s) 223, 350, 439, 976
MboII GAAGA 5 cut(s) 17, 132, 506, 686, 963
MfeI CAATTG 1 cut(s) 754
MflI RGATCY 2 cut(s) 223, 350
MhlI GDGCHC 2 cut(s) 448, 793
MluCI AATT 7 cut(s) 46, 247, 399, 581, 637, 684, 754
MlyI GAGTC 2 cut(s) 173, 728
MmeI TCCRAC 2 cut(s) 763, 920
MnlI CCTC 9 cut(s) 52, 325, 470, 475, 736, 772, 779, 823, 1002
Mph1103I ATGCAT 1 cut(s) 370
MroXI GAANNNNTTC 1 cut(s) 428
MseI TTAA 3 cut(s) 246, 584, 840
MslI CAYNNNNRTG 1 cut(s) 380
MspA1I CMGCKG 2 cut(s) 875, 948
MunI CAATTG 1 cut(s) 754
Mva1269I GAATGC 1 cut(s) 658
MvnI CGCG 1 cut(s) 948
NdeII GATC 4 cut(s) 223, 350, 439, 976
NlaIII CATG 7 cut(s) 59, 162, 277, 309, 329, 565, 620
NsiI ATGCAT 1 cut(s) 370
OliI CACNNNNGTG 1 cut(s) 380
PagI TCATGA 2 cut(s) 55, 325
PceI AGGCCT 2 cut(s) 746, 991
PctI GAATGC 1 cut(s) 658
PdmI GAANNNNTTC 1 cut(s) 428
PfeI GAWTC 7 cut(s) 52, 62, 385, 529, 554, 833, 926
PflMI CCANNNNNTGG 1 cut(s) 249
PleI GAGTC 2 cut(s) 172, 727
PpsI GAGTC 2 cut(s) 172, 727
PshBI ATTAAT 1 cut(s) 246
Psp124BI GAGCTC 1 cut(s) 793
PsuI RGATCY 2 cut(s) 223, 350
PvuII CAGCTG 1 cut(s) 875
RsaI GTAC 1 cut(s) 944
RsaNI GTAC 1 cut(s) 943
RseI CAYNNNNRTG 1 cut(s) 380
SacI GAGCTC 1 cut(s) 793
SacII CCGCGG 1 cut(s) 949
SaqAI TTAA 3 cut(s) 246, 584, 840
Sau3AI GATC 4 cut(s) 223, 350, 439, 976
SchI GAGTC 2 cut(s) 173, 728
SduI GDGCHC 2 cut(s) 448, 793
SfaNI GCATC 4 cut(s) 355, 377, 763, 951
SfcI CTRYAG 2 cut(s) 870, 876
Sfr303I CCGCGG 1 cut(s) 949
SgrBI CCGCGG 1 cut(s) 949
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 2 cut(s) 15, 98
SmoI CTYRAG 2 cut(s) 15, 98
SpeI ACTAGT 1 cut(s) 818
Sse9I AATT 7 cut(s) 46, 247, 399, 581, 637, 684, 754
SseBI AGGCCT 2 cut(s) 746, 991
SsiI CCGC 2 cut(s) 946, 948
SspMI CTAG 4 cut(s) 41, 296, 516, 819
SstI GAGCTC 1 cut(s) 793
StuI AGGCCT 2 cut(s) 746, 991
TaaI ACNGT 3 cut(s) 644, 862, 920
TaiI ACGT 1 cut(s) 12
TaqI TCGA 2 cut(s) 432, 929
TasI AATT 7 cut(s) 46, 247, 399, 581, 637, 684, 754
TfiI GAWTC 7 cut(s) 52, 62, 385, 529, 554, 833, 926
Tru1I TTAA 3 cut(s) 246, 584, 840
Tru9I TTAA 3 cut(s) 246, 584, 840
TscAI CASTG 4 cut(s) 75, 97, 718, 740
TspDTI ATGAA 5 cut(s) 44, 262, 294, 720, 751
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 4 cut(s) 75, 97, 718, 740
Van91I CCANNNNNTGG 1 cut(s) 249
VneI GTGCAC 1 cut(s) 444
VspI ATTAAT 1 cut(s) 246
XapI RAATTY 1 cut(s) 399
XmiI GTMKAC 1 cut(s) 154
XmnI GAANNNNTTC 1 cut(s) 428
XspI CTAG 4 cut(s) 41, 296, 516, 819
Zsp2I ATGCAT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.