Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010677

Physical Location & Seq

Genomic Coordinates Reverse (-)

13661201 .. 13663371

Gene Structure 2171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCGACCAAAGTTTACATAGTGTACTACTCAATGTATGGTCATGTGGAGAAATTAGCTCAAGAGATTAGGAAAGGTGCTGCTTCTGTTGATGGTGTTGAAGCCATACTCTGGCAGGTACCCGAAACGCTCCAAGAAGATGTGCTCTCTAAAATGAGTGCACCACCAAAGAGTGATGCTCCTATTATCACCCCAAACGAGCTCGCTGAGGCTGATGGATTTATCTTCGGCTTCCCAACGAGGTTTGGTATGATGGCTGCTCAGTTCAAGGCATTTTTAGATGCGACCGGCGGCCTTTGGAGGACTCAGCAACTCGCCGGTAAACCAGCCGGAATCTTCTACAGCACAGGGTCCCAAGGTGGTGGTCAAGAAACCACCGCATTAACTGCCATTACTCAGCTGGTTCATCACGGGATGATCTTTGTCCCGATTGGCTACACATTTGGTGCCGGAATGTTTGAGATGGAAAATGTGAAAGGTGGAAGCCCGTACGGGGCGGGAACATTTGCCGGAGATGGGTCGAGACAGCCAACGGAACTGGAGTTGGGGCAAGCATTTCACCAAGGGAAGTACATTGCCGCCATAAGTAAGAAGCTCAAGGGACCTGCTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003955 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0008150 GO:0008152 GO:0009506 GO:0010181 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0030054 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0055044 GO:0055114 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

205

Amino Acids

21.79

Weight (kDa)

6.08

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_red	PF03358	6 - 134	7.3e-14	NADPH-dependent FMN reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27270 AT4G27270 AT4G27270 AT4G27270
fragaria_vesca	FvH4_3g21430 FvH4_3g21430
malus_domestica	MD11G1230800.v1.1
prunus_persica	Prupe.4G196500_v2.0.a1
pyrus_communis	pycom03g16450 pycom11g20440
rosa_chinensis	RchiOBHm_Chr5g0036861
rosa_laevigata	RLG00000033728
rosa_multiflora	Rmu_sc0000399.1_g000016
rosa_roxburghii	Rroxscaffold_1G00044140
rosa_rugosa	Rorug05G0158000
rosa_samantha	Rh5AG250600 Rh5BG252200 Rh5CG284200 Rh5DG260700
rosa_wichuraiana	Rw5G023050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	106, 613
Acc65I	GGTACC	1 cut(s)	118
AccB1I	GGYRCC	2 cut(s)	118, 446
AccB7I	CCANNNNNTGG	1 cut(s)	111
AciI	CCGC	4 cut(s)	291, 378, 497, 579
AfaI	GTAC	4 cut(s)	26, 120, 491, 572
AfiI	CCNNNNNNNGG	3 cut(s)	111, 493, 516
AgsI	TTSAA	2 cut(s)	101, 268
AluBI	AGCT	4 cut(s)	59, 202, 400, 595
AluI	AGCT	4 cut(s)	59, 202, 400, 595
Alw21I	GWGCWC	3 cut(s)	147, 163, 204
Alw26I	GTCTC	1 cut(s)	517
Alw44I	GTGCAC	1 cut(s)	159
AoxI	GGCC	1 cut(s)	292
ApaLI	GTGCAC	1 cut(s)	159
ApeKI	GCWGC	4 cut(s)	80, 257, 608, 611
Asp718I	GGTACC	1 cut(s)	118
AspS9I	GGNCC	2 cut(s)	351, 602
AsuHPI	GGTGA	2 cut(s)	181, 551
AvaII	GGWCC	2 cut(s)	351, 602
BaeGI	GKGCMC	1 cut(s)	163
BanI	GGYRCC	2 cut(s)	118, 446
BanII	GRGCYC	1 cut(s)	204
Bbv12I	GWGCWC	3 cut(s)	147, 163, 204
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	4 cut(s)	67, 244, 595, 598
BccI	CCATC	5 cut(s)	86, 209, 247, 457, 509
BcoDI	GTCTC	1 cut(s)	517
BfmI	CTRYAG	1 cut(s)	340
BfuAI	ACCTGC	2 cut(s)	106, 613
BisI	GCNGC	6 cut(s)	81, 258, 292, 579, 609, 612
BlsI	GCNGC	6 cut(s)	82, 259, 293, 580, 610, 613
Bme18I	GGWCC	2 cut(s)	351, 602
BmgT120I	GGNCC	2 cut(s)	351, 602
BmiI	GGNNCC	5 cut(s)	120, 352, 353, 448, 603
BmsI	GCATC	2 cut(s)	166, 271
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpmI	CTGGAG	1 cut(s)	560
Bpu10I	CCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	2 cut(s)	45, 581
BsaJI	CCNNGG	2 cut(s)	355, 562
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 493, 516
Bse118I	RCCGGY	2 cut(s)	287, 317
Bse1I	ACTGG	1 cut(s)	543
Bse3DI	GCAATG	1 cut(s)	573
BseDI	CCNNGG	2 cut(s)	355, 562
BseGI	GGATG	1 cut(s)	420
BseLI	CCNNNNNNNGG	3 cut(s)	111, 493, 516
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	4 cut(s)	198, 275, 320, 410
BseNI	ACTGG	1 cut(s)	543
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	4 cut(s)	67, 244, 595, 598
Bsh1285I	CGRYCG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	294
BshNI	GGYRCC	2 cut(s)	118, 446
BsiEI	CGRYCG	1 cut(s)	288
BsiHKAI	GWGCWC	3 cut(s)	147, 163, 204
BsiSI	CCGG	5 cut(s)	288, 318, 330, 450, 510
BsiWI	CGTACG	1 cut(s)	489
BslFI	GGGAC	2 cut(s)	337, 410
BslI	CCNNNNNNNGG	3 cut(s)	111, 493, 516
BsmAI	GTCTC	1 cut(s)	517
BsmFI	GGGAC	2 cut(s)	337, 410
BsnI	GGCC	1 cut(s)	294
Bsp1286I	GDGCHC	3 cut(s)	147, 163, 204
Bsp143I	GATC	1 cut(s)	417
BspACI	CCGC	4 cut(s)	291, 378, 497, 579
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	4 cut(s)	199, 274, 319, 409
BspLI	GGNNCC	5 cut(s)	120, 352, 353, 448, 603
BspMI	ACCTGC	2 cut(s)	106, 613
BspT107I	GGYRCC	2 cut(s)	118, 446
BsrDI	GCAATG	1 cut(s)	573
BsrFI	RCCGGY	2 cut(s)	287, 317
BsrI	ACTGG	1 cut(s)	543
BssAI	RCCGGY	2 cut(s)	287, 317
BssECI	CCNNGG	2 cut(s)	355, 562
BssMI	GATC	1 cut(s)	417
BssT1I	CCWWGG	2 cut(s)	355, 562
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstC8I	GCNNGC	2 cut(s)	204, 552
BstDEI	CTNAG	5 cut(s)	207, 261, 306, 396, 615
BstF5I	GGATG	1 cut(s)	420
BstKTI	GATC	1 cut(s)	420
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	1 cut(s)	417
BstMCI	CGRYCG	1 cut(s)	288
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstSFI	CTRYAG	1 cut(s)	340
BstSLI	GKGCMC	1 cut(s)	163
BstV1I	GCAGC	4 cut(s)	67, 244, 595, 598
BstXI	CCANNNNNNTGG	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	420
BveI	ACCTGC	2 cut(s)	106, 613
Cac8I	GCNNGC	2 cut(s)	204, 552
Cfr10I	RCCGGY	2 cut(s)	287, 317
Cfr13I	GGNCC	2 cut(s)	351, 602
Csp6I	GTAC	4 cut(s)	25, 119, 490, 571
CviAII	CATG	1 cut(s)	44
CviQI	GTAC	4 cut(s)	25, 119, 490, 571
DdeI	CTNAG	5 cut(s)	207, 261, 306, 396, 615
DpnI	GATC	1 cut(s)	419
DpnII	GATC	1 cut(s)	417
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	2 cut(s)	355, 562
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	351, 602
Eco53kI	GAGCTC	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	202
EcoO109I	RGGNCCY	2 cut(s)	351, 602
EcoT14I	CCWWGG	2 cut(s)	355, 562
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	2 cut(s)	355, 562
FaeI	CATG	1 cut(s)	47
FaiI	YATR	6 cut(s)	20, 39, 45, 107, 251, 584
FaqI	GGGAC	2 cut(s)	337, 410
FatI	CATG	1 cut(s)	43
FauI	CCCGC	1 cut(s)	490
Fnu4HI	GCNGC	6 cut(s)	81, 258, 292, 579, 609, 612
FokI	GGATG	1 cut(s)	427
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	6 cut(s)	81, 258, 292, 579, 609, 612
GluI	GCNGC	6 cut(s)	81, 258, 292, 579, 609, 612
GsuI	CTGGAG	1 cut(s)	560
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	5 cut(s)	288, 318, 330, 450, 510
Hin1II	CATG	1 cut(s)	47
HinfI	GANTC	2 cut(s)	304, 333
HpaII	CCGG	5 cut(s)	288, 318, 330, 450, 510
HphI	GGTGA	2 cut(s)	181, 551
Hpy166II	GTNNAC	4 cut(s)	16, 25, 161, 323
Hpy188III	TCNNGA	4 cut(s)	62, 368, 427, 522
Hpy8I	GTNNAC	4 cut(s)	16, 25, 161, 323
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	5 cut(s)	207, 261, 306, 396, 615
Hsp92II	CATG	1 cut(s)	47
KflI	GGGWCCC	1 cut(s)	351
KpnI	GGTACC	1 cut(s)	122
Kzo9I	GATC	1 cut(s)	417
LmnI	GCTCC	2 cut(s)	135, 184
Lsp1109I	GCAGC	4 cut(s)	67, 244, 595, 598
LweI	GCATC	2 cut(s)	166, 271
MalI	GATC	1 cut(s)	419
MboI	GATC	1 cut(s)	417
MboII	GAAGA	3 cut(s)	149, 217, 328
MhlI	GDGCHC	3 cut(s)	147, 163, 204
MluCI	AATT	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	3 cut(s)	202, 234, 294
MseI	TTAA	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	5 cut(s)	288, 318, 330, 450, 510
MwoI	GCNNNNNNNGC	1 cut(s)	386
NdeII	GATC	1 cut(s)	417
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	5 cut(s)	120, 352, 353, 448, 603
PfeI	GAWTC	1 cut(s)	333
Pfl23II	CGTACG	1 cut(s)	489
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	6 cut(s)	82, 259, 293, 580, 610, 613
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PpuMI	RGGWCCY	2 cut(s)	351, 602
Psp124BI	GAGCTC	1 cut(s)	204
Psp5II	RGGWCCY	2 cut(s)	351, 602
PspLI	CGTACG	1 cut(s)	489
PspN4I	GGNNCC	5 cut(s)	120, 352, 353, 448, 603
PspPI	GGNCC	2 cut(s)	351, 602
PspPPI	RGGWCCY	2 cut(s)	351, 602
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	4 cut(s)	26, 120, 491, 572
RsaNI	GTAC	4 cut(s)	25, 119, 490, 571
SacI	GAGCTC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	6 cut(s)	81, 258, 292, 579, 609, 612
Sau3AI	GATC	1 cut(s)	417
Sau96I	GGNCC	2 cut(s)	351, 602
SchI	GAGTC	1 cut(s)	298
SduI	GDGCHC	3 cut(s)	147, 163, 204
SfaNI	GCATC	2 cut(s)	166, 271
SfcI	CTRYAG	1 cut(s)	340
SinI	GGWCC	2 cut(s)	351, 602
SmlI	CTYRAG	2 cut(s)	60, 596
SmoI	CTYRAG	2 cut(s)	60, 596
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	4 cut(s)	291, 378, 497, 579
SstI	GAGCTC	1 cut(s)	204
StyI	CCWWGG	2 cut(s)	355, 562
TaqI	TCGA	1 cut(s)	521
TasI	AATT	1 cut(s)	53
TatI	WGTACW	2 cut(s)	24, 570
TauI	GCSGC	2 cut(s)	294, 581
TfiI	GAWTC	1 cut(s)	333
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TseI	GCWGC	4 cut(s)	80, 257, 608, 611
TspDTI	ATGAA	1 cut(s)	395
TspGWI	ACGGA	1 cut(s)	548
Van91I	CCANNNNNTGG	1 cut(s)	111
VneI	GTGCAC	1 cut(s)	159
VpaK11BI	GGWCC	2 cut(s)	351, 602
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.