Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006349

Physical Location & Seq

Genomic Coordinates Reverse (-)

13937573 .. 13939171

Gene Structure 1599 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCGTTTCTCTGTTCGTCTCTCCCAAGTTCATCCTCTATCGCCATTTTCGGCGACCCAAACACAGATGGATCATCACGCTCGTATCTTTCGATTCCTTCATTGAAGTTACGGTTCCGTCCCGTCGCTGCTTCCTCACACATTTGTGCTCCAGCGATCGACAAGTCGACTTTCGTCATATCCGAATCGGTGTCAGAAGATGAGCTTTGGGCTGCAGCTTGTCTCCGCGTACGAACCTTCAACGAACTCAATCCTTCTGCTTACAATATCCAAGATCATAGAAGATACTTGGCAGAGCGTGAATTCGAGGCGCTTAAGGAGAGAACTTCAGGGAAGAGGGAAGGGTTTACGCGGGTCGCTTGCATAAATGCTACCCTTCCATTGTCGCAATTATCAAGCTCTTTTGAGGATTTATGCTCTGCATGTAAGTTCTCTGATGGCATAGAAGACAGAGTTGTGGTGGGAAGCCTTGATCTTAACCAATGTCGTTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGATTTTGCTAGAGCATACTTGAGCAACGTCTGTGTTGCAAAAGAGCTGCATCGTAATGGAGTTGGTTACAAACTTATTGACAAGTCTAAGAGAGTTGCTGGAGAATGGGGCATAACGGATATGTACGTGCATGTGACGGTAGACAATGAAGCAGCGAAGAGTCTATACATGAAAAGTGGGTTTGAGCAAGAGACCGCTGAGCCAGCGTGGCAAGCTCGATACCTCAATAGGCCACAACGGCTCCTCCTCTGGCTCGCCCTTCCTACCTCCCCAATCATGTCCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

274

Amino Acids

30.42

Weight (kDa)

6.14

Isoelectric Point (pI)

54.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28030 AT4G28030
fragaria_vesca	FvH4_4g23510 FvH4_4g23510 FvH4_4g23510
malus_domestica	MD16G1262600.v1.1
prunus_persica	Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1
pyrus_communis	pycom16g23150
rosa_chinensis	RchiOBHm_Chr4g0404931
rosa_laevigata	RLG00000008895
rosa_multiflora	Rmu_sc0000358.1_g000020 Rmu_sc0024668.1_g000003
rosa_roxburghii	Rroxscaffold_5G00349050
rosa_rugosa	Rorug04G0049700
rosa_samantha	Rh4AG126000 Rh4BG120200 Rh4CG134200 Rh4DG119600
rosa_wichuraiana	Rw4G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	167, 678
AccII	CGCG	2 cut(s)	228, 352
AciI	CCGC	3 cut(s)	226, 352, 732
AclWI	GGATC	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	2 cut(s)	231, 662
AflII	CTTAAG	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	106, 241
AleI	CACNNNNGTG	1 cut(s)	144
AluBI	AGCT	5 cut(s)	205, 218, 399, 583, 752
AluI	AGCT	5 cut(s)	205, 218, 399, 583, 752
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	3 cut(s)	24, 227, 722
AlwI	GGATC	1 cut(s)	79
AoxI	GGCC	1 cut(s)	767
ApeKI	GCWGC	5 cut(s)	128, 212, 215, 583, 689
ApoI	RAATTY	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	313
BaeI	ACNNNNGTAYC	2 cut(s)	68, 101
BarI	GAAGNNNNNNTAC	2 cut(s)	686, 718
BbsI	GAAGAC	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	5 cut(s)	115, 199, 227, 570, 701
BccI	CCATC	2 cut(s)	62, 431
BceAI	ACGGC	1 cut(s)	791
BcoDI	GTCTC	3 cut(s)	24, 227, 722
BfaI	CTAG	1 cut(s)	546
BfmI	CTRYAG	1 cut(s)	213
BfoI	RGCGCY	1 cut(s)	314
BfrI	CTTAAG	1 cut(s)	314
BglI	GCCNNNNNGGC	2 cut(s)	745, 775
BisI	GCNGC	5 cut(s)	129, 213, 216, 584, 690
BlpI	GCTNAGC	1 cut(s)	735
BlsI	GCNGC	5 cut(s)	130, 214, 217, 585, 691
BmiI	GGNNCC	2 cut(s)	116, 779
BmsI	GCATC	1 cut(s)	595
BoxI	GACNNNNGTC	1 cut(s)	173
BpiI	GAAGAC	1 cut(s)	453
BpmI	CTGGAG	2 cut(s)	135, 657
Bpu1102I	GCTNAGC	1 cut(s)	735
BpuEI	CTTGAG	1 cut(s)	577
BsaAI	YACGTR	1 cut(s)	664
BsaI	GGTCTC	1 cut(s)	722
BsaXI	ACNNNNNCTCC	4 cut(s)	762, 765, 792, 795
BseGI	GGATG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	726
BseRI	GAGGAG	2 cut(s)	770, 773
BseXI	GCAGC	5 cut(s)	115, 199, 227, 570, 701
Bsh1236I	CGCG	2 cut(s)	228, 352
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	769
BsiEI	CGRYCG	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	151
BsiWI	CGTACG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	105
BsmAI	GTCTC	3 cut(s)	24, 227, 722
BsmBI	CGTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	769
Bso31I	GGTCTC	1 cut(s)	722
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	4 cut(s)	71, 156, 274, 472
Bsp1720I	GCTNAGC	1 cut(s)	735
BspACI	CCGC	3 cut(s)	226, 352, 732
BspANI	GGCC	1 cut(s)	769
BspCNI	CTCAG	1 cut(s)	727
BspFNI	CGCG	2 cut(s)	228, 352
BspLI	GGNNCC	2 cut(s)	116, 779
BspMAI	CTGCAG	1 cut(s)	217
BspPI	GGATC	1 cut(s)	79
BspTI	CTTAAG	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	722
BssMI	GATC	4 cut(s)	71, 156, 274, 472
Bst4CI	ACNGT	2 cut(s)	114, 676
Bst6I	CTCTTC	2 cut(s)	329, 689
BstAFI	CTTAAG	1 cut(s)	314
BstBAI	YACGTR	1 cut(s)	664
BstC8I	GCNNGC	4 cut(s)	361, 741, 750, 792
BstDEI	CTNAG	2 cut(s)	624, 735
BstF5I	GGATG	1 cut(s)	32
BstFNI	CGCG	2 cut(s)	228, 352
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	4 cut(s)	74, 159, 277, 475
BstMAI	GTCTC	3 cut(s)	24, 227, 722
BstMBI	GATC	4 cut(s)	71, 156, 274, 472
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	4 cut(s)	740, 745, 749, 775
BstNSI	RCATGY	2 cut(s)	426, 671
BstPAI	GACNNNNGTC	1 cut(s)	173
BstSFI	CTRYAG	1 cut(s)	213
BstUI	CGCG	2 cut(s)	228, 352
BstV1I	GCAGC	5 cut(s)	115, 199, 227, 570, 701
BstV2I	GAAGAC	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	769
BtsCI	GGATG	1 cut(s)	32
Cac8I	GCNNGC	4 cut(s)	361, 741, 750, 792
CfoI	GCGC	1 cut(s)	313
Csp6I	GTAC	2 cut(s)	230, 661
CviAII	CATG	5 cut(s)	423, 668, 706, 814, 820
CviQI	GTAC	2 cut(s)	230, 661
DdeI	CTNAG	2 cut(s)	624, 735
DpnI	GATC	4 cut(s)	73, 158, 276, 474
DpnII	GATC	4 cut(s)	71, 156, 274, 472
Eam1104I	CTCTTC	2 cut(s)	329, 689
EarI	CTCTTC	2 cut(s)	329, 689
Eco31I	GGTCTC	1 cut(s)	722
Eco57I	CTGAAG	1 cut(s)	312
EcoRI	GAATTC	1 cut(s)	302
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	5 cut(s)	426, 671, 709, 817, 823
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	5 cut(s)	422, 667, 705, 813, 819
FauI	CCCGC	1 cut(s)	345
FblI	GTMKAC	2 cut(s)	167, 678
Fnu4HI	GCNGC	5 cut(s)	129, 213, 216, 584, 690
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	5 cut(s)	129, 213, 216, 584, 690
FspBI	CTAG	1 cut(s)	546
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	5 cut(s)	129, 213, 216, 584, 690
GsuI	CTGGAG	2 cut(s)	135, 657
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	769
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	5 cut(s)	426, 671, 709, 817, 823
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	3 cut(s)	94, 185, 697
Hpy166II	GTNNAC	3 cut(s)	168, 348, 679
Hpy188I	TCNGA	3 cut(s)	184, 196, 436
Hpy188III	TCNNGA	1 cut(s)	497
Hpy8I	GTNNAC	3 cut(s)	168, 348, 679
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	6 cut(s)	108, 247, 264, 335, 386, 806
HpyCH4III	ACNGT	2 cut(s)	114, 676
HpyCH4IV	ACGT	2 cut(s)	564, 663
HpyCH4V	TGCA	6 cut(s)	215, 363, 422, 575, 586, 667
HpyF10VI	GCNNNNNNNGC	4 cut(s)	740, 745, 749, 775
HpyF3I	CTNAG	2 cut(s)	624, 735
HpySE526I	ACGT	2 cut(s)	564, 663
Hsp92II	CATG	5 cut(s)	426, 671, 709, 817, 823
HspAI	GCGC	1 cut(s)	311
Kzo9I	GATC	4 cut(s)	71, 156, 274, 472
LmnI	GCTCC	2 cut(s)	154, 783
LpnPI	CCDG	8 cut(s)	165, 315, 495, 510, 534, 621, 753, 772
Lsp1109I	GCAGC	5 cut(s)	115, 199, 227, 570, 701
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	1 cut(s)	546
MaeII	ACGT	2 cut(s)	564, 663
MaeIII	GTNAC	3 cut(s)	108, 602, 670
MalI	GATC	4 cut(s)	73, 158, 276, 474
MboI	GATC	4 cut(s)	71, 156, 274, 472
MboII	GAAGA	5 cut(s)	209, 294, 346, 458, 706
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	3 cut(s)	302, 389, 504
MlyI	GAGTC	1 cut(s)	706
MseI	TTAA	2 cut(s)	315, 477
MslI	CAYNNNNRTG	3 cut(s)	144, 591, 818
MspA1I	CMGCKG	1 cut(s)	734
MspCI	CTTAAG	1 cut(s)	314
MvnI	CGCG	2 cut(s)	228, 352
MwoI	GCNNNNNNNGC	4 cut(s)	740, 745, 749, 775
NdeII	GATC	4 cut(s)	71, 156, 274, 472
NlaIII	CATG	5 cut(s)	426, 671, 709, 817, 823
NlaIV	GGNNCC	2 cut(s)	116, 779
NmuCI	GTSAC	1 cut(s)	670
NspI	RCATGY	2 cut(s)	426, 671
OliI	CACNNNNGTG	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	2 cut(s)	89, 180
PfeI	GAWTC	2 cut(s)	94, 185
Pfl23II	CGTACG	1 cut(s)	229
PkrI	GCNGC	5 cut(s)	130, 214, 217, 585, 691
Ple19I	CGATCG	1 cut(s)	159
PleI	GAGTC	1 cut(s)	705
PpsI	GAGTC	1 cut(s)	705
Ppu21I	YACGTR	1 cut(s)	664
PshAI	GACNNNNGTC	1 cut(s)	173
PspLI	CGTACG	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	116, 779
PstI	CTGCAG	1 cut(s)	217
PvuI	CGATCG	1 cut(s)	159
RsaI	GTAC	2 cut(s)	231, 662
RsaNI	GTAC	2 cut(s)	230, 661
RseI	CAYNNNNRTG	3 cut(s)	144, 591, 818
SalI	GTCGAC	1 cut(s)	166
SaqAI	TTAA	2 cut(s)	315, 477
SatI	GCNGC	5 cut(s)	129, 213, 216, 584, 690
Sau3AI	GATC	4 cut(s)	71, 156, 274, 472
SchI	GAGTC	1 cut(s)	706
SduI	GDGCHC	1 cut(s)	151
SfaNI	GCATC	1 cut(s)	595
SfcI	CTRYAG	1 cut(s)	213
SmiMI	CAYNNNNRTG	3 cut(s)	144, 591, 818
SmlI	CTYRAG	2 cut(s)	314, 556
SmoI	CTYRAG	2 cut(s)	314, 556
Sse9I	AATT	3 cut(s)	302, 389, 504
SsiI	CCGC	3 cut(s)	226, 352, 732
SspMI	CTAG	1 cut(s)	546
TaaI	ACNGT	2 cut(s)	114, 676
TaiI	ACGT	2 cut(s)	567, 666
TaqI	TCGA	5 cut(s)	92, 159, 167, 306, 754
TasI	AATT	3 cut(s)	302, 389, 504
TfiI	GAWTC	2 cut(s)	94, 185
Tru1I	TTAA	2 cut(s)	315, 477
Tru9I	TTAA	2 cut(s)	315, 477
TseFI	GTSAC	1 cut(s)	670
TseI	GCWGC	5 cut(s)	128, 212, 215, 583, 689
Tsp45I	GTSAC	1 cut(s)	670
TspDTI	ATGAA	5 cut(s)	21, 90, 516, 699, 722
TspGWI	ACGGA	2 cut(s)	107, 668
Vha464I	CTTAAG	1 cut(s)	314
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	2 cut(s)	426, 671
XmiI	GTMKAC	2 cut(s)	167, 678
XspI	CTAG	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.