Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006349

Physical Location & Seq

Genomic Coordinates Reverse (-)

25977300 .. 25982085

Gene Structure 4786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23510.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCCCTCCTCTCTTCTCCTCGTCCTCTCCCAACCCACTTCTCTGCTTCTTCTCTACTTGTCCGGCGCCGCCCGATCACCGCCTGCCAAGTCTGCACCCCCAAGCAACCCTTACACCACTCCACCCTCCTCAACGTCTCCGAGGCTTCTGCCGAAGATGAGCTCTGGGCCGCCGCCTGTCTCCGTGTCCGCTCCTTCTCCAACTTGAAGCCGACCACGTTCGGTCTCCAAGATCACCAAAGGTTCTTGGCGGAGCGAGAGTTCGAAGCTATCAAGGAACGTGTTAGTGGGAAGAGGAAGGGCTTTGGGAGAGTTTCGTGTATAAATGCTACTGTCCCATTGTCGCACTTGTTGAGCCTTTCGGTTTCAGCTGATGACTTATGTGCTTCGTGTAAGTTTACCACCAACGGACAAGATCGAGTAGTGGTTGGGACGCTTGATCTTAACCAGTGTGTAAGTCTTCCTGATGAGATAGCTGGAAGCAGACCAAAGGAGATTGGAGCTGATTTTGCAAGGGCATACCTGAGCAATGTATGTGTTGCCAAGGAACTGCATAGAACTGGTTTAGGTCATGCTCTTGTTGCAAAGTCAAAGTTAGTTGCGCACGATTGGGGCATAAGTGATCTGTATGTTCATGTTGCTGTTGACAATGAACCAGCAAAACAGCTGTACACAAAGAGTGGTTTTGTTTATGAATGTGATGAACCTGCATGGCAGGCCAGGTTCCTGGACCGGCCAAGAAGGTTACTTTTGTGGTTTGGTATCCCCGGCGTGCAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

261

Amino Acids

28.72

Weight (kDa)

8.74

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28030 AT4G28030
fragaria_vesca	FvH4_4g23510 FvH4_4g23510 FvH4_4g23510
malus_domestica	MD16G1262600.v1.1
prunus_persica	Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1
pyrus_communis	pycom16g23150
rosa_chinensis	RchiOBHm_Chr4g0404931
rosa_laevigata	RLG00000008895
rosa_multiflora	Rmu_sc0000358.1_g000020 Rmu_sc0024668.1_g000003
rosa_roxburghii	Rroxscaffold_5G00349050
rosa_rugosa	Rorug04G0049700
rosa_samantha	Rh4AG126000 Rh4BG120200 Rh4CG134200 Rh4DG119600
rosa_wichuraiana	Rw4G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	603
Acc36I	ACCTGC	1 cut(s)	715
AccB1I	GGYRCC	1 cut(s)	66
AccBSI	CCGCTC	1 cut(s)	192
AciI	CCGC	6 cut(s)	70, 81, 171, 174, 190, 251
AcoI	YGGCCR	1 cut(s)	734
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	1 cut(s)	671
AflIII	ACRYGT	1 cut(s)	280
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	719, 726
AloI	GAACNNNNNNTCC	2 cut(s)	245, 277
AluBI	AGCT	6 cut(s)	163, 269, 371, 476, 503, 667
AluI	AGCT	6 cut(s)	163, 269, 371, 476, 503, 667
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	3 cut(s)	142, 185, 230
AoxI	GGCC	4 cut(s)	3, 168, 717, 734
AspLEI	GCGC	2 cut(s)	69, 604
AspS9I	GGNCC	3 cut(s)	4, 168, 730
AsuC2I	CCSGG	1 cut(s)	768
AsuHPI	GGTGA	2 cut(s)	70, 227
AsuII	TTCGAA	1 cut(s)	264
AvaII	GGWCC	1 cut(s)	730
BanI	GGYRCC	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	165
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	2 cut(s)	721, 728
BciVI	GTATCC	1 cut(s)	773
BcnI	CCSGG	1 cut(s)	768
BcoDI	GTCTC	3 cut(s)	142, 185, 230
BfoI	RGCGCY	1 cut(s)	70
BfuAI	ACCTGC	1 cut(s)	715
BfuI	GTATCC	1 cut(s)	773
BisI	GCNGC	3 cut(s)	70, 171, 174
BlsI	GCNGC	3 cut(s)	71, 172, 175
Bme1390I	CCNGG	3 cut(s)	721, 728, 768
Bme18I	GGWCC	1 cut(s)	730
BmgT120I	GGNCC	3 cut(s)	4, 168, 730
BmiI	GGNNCC	2 cut(s)	68, 725
BmrFI	CCNGG	3 cut(s)	721, 728, 768
BpiI	GAAGAC	1 cut(s)	452
Bpu10I	CCTNAGC	1 cut(s)	524
Bpu14I	TTCGAA	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	768
BsaHI	GRCGYC	1 cut(s)	67
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	141, 543, 766
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bse118I	RCCGGY	1 cut(s)	732
Bse1I	ACTGG	2 cut(s)	448, 565
Bse3DI	GCAATG	1 cut(s)	535
BseBI	CCWGG	2 cut(s)	721, 728
BseDI	CCNNGG	3 cut(s)	141, 543, 766
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	1 cut(s)	515
BseNI	ACTGG	2 cut(s)	448, 565
BseRI	GAGGAG	2 cut(s)	9, 119
BsgI	GTGCAG	1 cut(s)	79
BshFI	GGCC	4 cut(s)	5, 170, 719, 736
BshNI	GGYRCC	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	3 cut(s)	64, 733, 768
BslFI	GGGAC	2 cut(s)	320, 445
BsmAI	GTCTC	3 cut(s)	142, 185, 230
BsmBI	CGTCTC	1 cut(s)	142
BsmFI	GGGAC	2 cut(s)	320, 445
BsnI	GGCC	4 cut(s)	5, 170, 719, 736
Bso31I	GGTCTC	1 cut(s)	230
Bsp119I	TTCGAA	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp1407I	TGTACA	1 cut(s)	669
Bsp143I	GATC	5 cut(s)	75, 232, 415, 439, 622
BspACI	CCGC	6 cut(s)	70, 81, 171, 174, 190, 251
BspANI	GGCC	4 cut(s)	5, 170, 719, 736
BspCNI	CTCAG	1 cut(s)	516
BspLI	GGNNCC	2 cut(s)	68, 725
BspMI	ACCTGC	1 cut(s)	715
BspT104I	TTCGAA	1 cut(s)	264
BspT107I	GGYRCC	1 cut(s)	66
BspTNI	GGTCTC	1 cut(s)	230
BsrBI	CCGCTC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	535
BsrFI	RCCGGY	1 cut(s)	732
BsrGI	TGTACA	1 cut(s)	669
BsrI	ACTGG	2 cut(s)	448, 565
BssAI	RCCGGY	1 cut(s)	732
BssECI	CCNNGG	3 cut(s)	141, 543, 766
BssMI	GATC	5 cut(s)	75, 232, 415, 439, 622
BssNI	GRCGYC	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	543
Bst2UI	CCWGG	2 cut(s)	721, 728
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	2 cut(s)	19, 287
BstACI	GRCGYC	1 cut(s)	67
BstAUI	TGTACA	1 cut(s)	669
BstBI	TTCGAA	1 cut(s)	264
BstC8I	GCNNGC	3 cut(s)	85, 717, 773
BstDEI	CTNAG	1 cut(s)	524
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	69, 604
BstKTI	GATC	5 cut(s)	78, 235, 418, 442, 625
BstMAI	GTCTC	3 cut(s)	142, 185, 230
BstMBI	GATC	5 cut(s)	75, 232, 415, 439, 622
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 509, 581, 716
BstNI	CCWGG	2 cut(s)	721, 728
BstSCI	CCNGG	3 cut(s)	719, 726, 766
BstV2I	GAAGAC	1 cut(s)	452
BstXI	CCANNNNNNTGG	1 cut(s)	727
BsuI	GTATCC	1 cut(s)	773
BsuRI	GGCC	4 cut(s)	5, 170, 719, 736
BtsIMutI	CAGTG	1 cut(s)	455
BveI	ACCTGC	1 cut(s)	715
Cac8I	GCNNGC	3 cut(s)	85, 717, 773
CfoI	GCGC	2 cut(s)	69, 604
Cfr10I	RCCGGY	1 cut(s)	732
Cfr13I	GGNCC	3 cut(s)	4, 168, 730
CseI	GACGC	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	670
CviAII	CATG	3 cut(s)	572, 635, 711
CviQI	GTAC	1 cut(s)	670
DdeI	CTNAG	1 cut(s)	524
DinI	GGCGCC	1 cut(s)	68
DpnI	GATC	5 cut(s)	77, 234, 417, 441, 624
DpnII	GATC	5 cut(s)	75, 232, 415, 439, 622
EaeI	YGGCCR	1 cut(s)	734
Eam1104I	CTCTTC	2 cut(s)	19, 287
EarI	CTCTTC	2 cut(s)	19, 287
EciI	GGCGGA	1 cut(s)	266
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	543
Eco24I	GRGCYC	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	730
Eco53kI	GAGCTC	1 cut(s)	163
EcoICRI	GAGCTC	1 cut(s)	163
EcoRII	CCWGG	2 cut(s)	719, 726
EcoT14I	CCWWGG	1 cut(s)	543
EcoT38I	GRGCYC	1 cut(s)	165
EgeI	GGCGCC	1 cut(s)	68
EheI	GGCGCC	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	543
Esp3I	CGTCTC	1 cut(s)	142
FaeI	CATG	3 cut(s)	575, 638, 714
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FaqI	GGGAC	2 cut(s)	320, 445
FatI	CATG	3 cut(s)	571, 634, 710
Fnu4HI	GCNGC	3 cut(s)	70, 171, 174
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	3 cut(s)	70, 171, 174
FspI	TGCGCA	1 cut(s)	603
GlaI	GCGC	2 cut(s)	68, 603
GluI	GCNGC	3 cut(s)	70, 171, 174
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	4 cut(s)	5, 170, 719, 736
HapII	CCGG	3 cut(s)	64, 733, 768
HgaI	GACGC	1 cut(s)	442
HhaI	GCGC	2 cut(s)	69, 604
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	3 cut(s)	575, 638, 714
Hin6I	GCGC	2 cut(s)	67, 602
HinP1I	GCGC	2 cut(s)	67, 602
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HpaII	CCGG	3 cut(s)	64, 733, 768
HphI	GGTGA	2 cut(s)	70, 227
Hpy166II	GTNNAC	3 cut(s)	399, 646, 672
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	464
Hpy8I	GTNNAC	3 cut(s)	399, 646, 672
HpyAV	CCTTC	3 cut(s)	205, 292, 735
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	3 cut(s)	135, 218, 280
HpyCH4V	TGCA	6 cut(s)	96, 512, 553, 584, 710, 775
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 509, 581, 716
HpyF3I	CTNAG	1 cut(s)	524
HpySE526I	ACGT	3 cut(s)	135, 218, 280
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	3 cut(s)	575, 638, 714
HspAI	GCGC	2 cut(s)	67, 602
KasI	GGCGCC	1 cut(s)	66
Kzo9I	GATC	5 cut(s)	75, 232, 415, 439, 622
LmnI	GCTCC	3 cut(s)	197, 253, 500
MaeII	ACGT	3 cut(s)	135, 218, 280
MaeIII	GTNAC	1 cut(s)	744
MalI	GATC	5 cut(s)	77, 234, 417, 441, 624
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	5 cut(s)	75, 232, 415, 439, 622
MboII	GAAGA	5 cut(s)	6, 42, 167, 304, 452
MhlI	GDGCHC	1 cut(s)	165
Mly113I	GGCGCC	1 cut(s)	67
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	8 cut(s)	17, 20, 30, 36, 136, 137, 140, 288
MseI	TTAA	1 cut(s)	444
MspA1I	CMGCKG	2 cut(s)	371, 667
MspI	CCGG	3 cut(s)	64, 733, 768
MspR9I	CCNGG	3 cut(s)	721, 728, 768
MvaI	CCWGG	2 cut(s)	721, 728
MwoI	GCNNNNNNNGC	4 cut(s)	93, 509, 581, 716
NarI	GGCGCC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	768
NdeII	GATC	5 cut(s)	75, 232, 415, 439, 622
NlaIII	CATG	3 cut(s)	575, 638, 714
NlaIV	GGNNCC	2 cut(s)	68, 725
NsbI	TGCGCA	1 cut(s)	603
NspV	TTCGAA	1 cut(s)	264
PfoI	TCCNGGA	1 cut(s)	726
PkrI	GCNGC	3 cut(s)	71, 172, 175
PluTI	GGCGCC	1 cut(s)	70
Psp124BI	GAGCTC	1 cut(s)	165
Psp6I	CCWGG	2 cut(s)	719, 726
PspGI	CCWGG	2 cut(s)	719, 726
PspN4I	GGNNCC	2 cut(s)	68, 725
PspPI	GGNCC	3 cut(s)	4, 168, 730
PvuII	CAGCTG	2 cut(s)	371, 667
RsaI	GTAC	1 cut(s)	671
RsaNI	GTAC	1 cut(s)	670
SacI	GAGCTC	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	3 cut(s)	70, 171, 174
Sau3AI	GATC	5 cut(s)	75, 232, 415, 439, 622
Sau96I	GGNCC	3 cut(s)	4, 168, 730
ScrFI	CCNGG	3 cut(s)	721, 728, 768
SduI	GDGCHC	1 cut(s)	165
SfoI	GGCGCC	1 cut(s)	68
SfuI	TTCGAA	1 cut(s)	264
SinI	GGWCC	1 cut(s)	730
SsiI	CCGC	6 cut(s)	70, 81, 171, 174, 190, 251
SspDI	GGCGCC	1 cut(s)	66
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	3 cut(s)	719, 726, 766
StyI	CCWWGG	1 cut(s)	543
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	3 cut(s)	138, 221, 283
TaqI	TCGA	2 cut(s)	264, 418
TaqII	GACCGA	1 cut(s)	212
TatI	WGTACW	1 cut(s)	669
TauI	GCSGC	3 cut(s)	72, 173, 176
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	1 cut(s)	455
TspDTI	ATGAA	4 cut(s)	623, 666, 708, 717
TspGWI	ACGGA	2 cut(s)	173, 423
TspRI	CASTG	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.