Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006349

Physical Location & Seq

Genomic Coordinates Forward (+)

27321634 .. 27328580

Gene Structure 6947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG126000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCCCTCCTATCATCTCCTCGTCCTCTCCCAACCCACTTCTCTGCTTCCACCTCCACTTCTCTACTTGTCCGCCGCCGCCCAATCACCGCCTGCCAAGTCTGCACCCCCAAGCAACCCTTACACGAGTCCACTCTCAATGTCGCCGAAGGTTTTGCCGAGGATGAGCTCTGGGCCGCCGCCTGTCTCCGTGTTCGGTCCTTCTACCAGTTCAAGCCCACCACGTTCGGCCTCCAAGATCACAAAAAGTTCTTGGCGGAGCGAGAGTTTGAAGCTATCAAGGAACGTGTTGGTGGGAAGAGGAAGGGTTTTGGGAGAGTTTCGTGTATAAATGCTACAGTCCCACTTTCGCAATTCTCAAGCCTTTCATTTCCGGCAGATGATTTATGTGCTTCCTGTAAGTTTACCGACAATGGTGAAGATCGAGTAGTAGTTGGGACCCTTGATCTTAACCAGTGTGTAAGTCTTCCAGATGAGATAGCAGGAAGAAGACCAGAGGCGATTGGAGCTGATTTTGCAAGGGCATATCTGAGTAATGTATGTGTTGCCAAGGAACTGCATAGAAATGGTTTAGGTCATGCTCTTGTGGCAAAGTCAAAGTTAGTTGCGCGAGATTGGGGCATAAGTGATCTGTATGTTCATGTTGCTGTTGATAATGAACCAGCAAAACAGTTGTACATGAAGAGTGGTTTCGTTTATGAGAGTGACGAACCTGCATGGCAGGCCAGGTTCCTGGACCGGCCAAGAAGGGGAGGTGGCCAGAGCAGTCTAGGTCCCAGCGGAGGACGGGAGGTGGTGGTGGAAAGACGGCGGCTTGTTGTAGATTGTGAACGATGGTTGTGTTTGTTTACGGCGACCCCAGAGGAGTTCTGCTTCAACACACCATCTGCAGAGACTCTCCAGCTCCTTTCAACTGCCTTTACTGCGGCGACACCAGACTCACTGACGGTTGCTGAATTTGAAAAGTCTGATCCTTGTATTGTGATGGACCCTCCTAACTGGACAGAAGCCAGCTTTGCAGGTCCTGCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

344

Amino Acids

37.88

Weight (kDa)

6.34

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	144 - 231	1.4e-09	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	174 - 232	7.5e-06	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28030 AT4G28030
fragaria_vesca	FvH4_4g23510 FvH4_4g23510 FvH4_4g23510
malus_domestica	MD16G1262600.v1.1
prunus_persica	Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1
pyrus_communis	pycom16g23150
rosa_chinensis	RchiOBHm_Chr4g0404931
rosa_laevigata	RLG00000008895
rosa_multiflora	Rmu_sc0000358.1_g000020 Rmu_sc0024668.1_g000003
rosa_roxburghii	Rroxscaffold_5G00349050
rosa_rugosa	Rorug04G0049700
rosa_samantha	Rh4AG126000 Rh4BG120200 Rh4CG134200 Rh4DG119600
rosa_wichuraiana	Rw4G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	721, 1010
AccII	CGCG	1 cut(s)	610
AclWI	GGATC	1 cut(s)	965
AcoI	YGGCCR	2 cut(s)	740, 757
AcsI	RAATTY	1 cut(s)	956
AfaI	GTAC	1 cut(s)	677
AfiI	CCNNNNNNNGG	2 cut(s)	749, 782
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	5 cut(s)	214, 272, 877, 912, 962
AjnI	CCWGG	2 cut(s)	725, 732
AluBI	AGCT	5 cut(s)	169, 275, 509, 904, 1014
AluI	AGCT	5 cut(s)	169, 275, 509, 904, 1014
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	2 cut(s)	191, 887
AlwI	GGATC	1 cut(s)	965
AlwNI	CAGNNNCTG	1 cut(s)	1025
AoxI	GGCC	6 cut(s)	3, 174, 229, 723, 740, 757
ApoI	RAATTY	1 cut(s)	956
AspLEI	GCGC	1 cut(s)	610
AspS9I	GGNCC	8 cut(s)	4, 174, 198, 438, 736, 773, 988, 1022
AsuHPI	GGTGA	2 cut(s)	79, 428
AvaII	GGWCC	6 cut(s)	198, 438, 736, 773, 988, 1022
BalI	TGGCCA	1 cut(s)	759
BanII	GRGCYC	1 cut(s)	171
BauI	CACGAG	1 cut(s)	125
BbsI	GAAGAC	2 cut(s)	458, 496
Bbv12I	GWGCWC	1 cut(s)	171
BccI	CCATC	3 cut(s)	828, 892, 979
BceAI	ACGGC	2 cut(s)	824, 867
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	2 cut(s)	727, 734
BcoDI	GTCTC	2 cut(s)	191, 887
BfaI	CTAG	1 cut(s)	770
BfmI	CTRYAG	2 cut(s)	336, 888
BfuAI	ACCTGC	2 cut(s)	721, 1010
BisI	GCNGC	6 cut(s)	76, 79, 177, 180, 812, 927
BlsI	GCNGC	6 cut(s)	77, 80, 178, 181, 813, 928
Bme1390I	CCNGG	2 cut(s)	727, 734
Bme18I	GGWCC	6 cut(s)	198, 438, 736, 773, 988, 1022
BmgT120I	GGNCC	8 cut(s)	4, 174, 198, 438, 736, 773, 988, 1022
BmiI	GGNNCC	5 cut(s)	439, 440, 731, 775, 990
BmrFI	CCNGG	2 cut(s)	727, 734
BpiI	GAAGAC	2 cut(s)	458, 496
BpmI	CTGGAG	1 cut(s)	884
BpuEI	CTTGAG	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	159, 549
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bsc4I	CCNNNNNNNGG	2 cut(s)	749, 782
Bse118I	RCCGGY	1 cut(s)	738
Bse1I	ACTGG	3 cut(s)	208, 454, 1004
BseBI	CCWGG	2 cut(s)	727, 734
BseDI	CCNNGG	2 cut(s)	159, 549
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	2 cut(s)	749, 782
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	3 cut(s)	208, 454, 1004
BseRI	GAGGAG	2 cut(s)	9, 878
BseYI	CCCAGC	1 cut(s)	776
BsgI	GTGCAG	1 cut(s)	88
Bsh1236I	CGCG	1 cut(s)	610
BshFI	GGCC	6 cut(s)	5, 176, 231, 725, 742, 759
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	374, 739
BslFI	GGGAC	3 cut(s)	326, 451, 759
BslI	CCNNNNNNNGG	2 cut(s)	749, 782
BsmAI	GTCTC	2 cut(s)	191, 887
BsmFI	GGGAC	3 cut(s)	326, 451, 759
BsnI	GGCC	6 cut(s)	5, 176, 231, 725, 742, 759
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp1407I	TGTACA	1 cut(s)	675
Bsp143I	GATC	5 cut(s)	238, 421, 445, 628, 970
BspANI	GGCC	6 cut(s)	5, 176, 231, 725, 742, 759
BspCNI	CTCAG	1 cut(s)	522
BspFNI	CGCG	1 cut(s)	610
BspLI	GGNNCC	5 cut(s)	439, 440, 731, 775, 990
BspMAI	CTGCAG	1 cut(s)	892
BspMI	ACCTGC	2 cut(s)	721, 1010
BspPI	GGATC	1 cut(s)	965
BsrFI	RCCGGY	1 cut(s)	738
BsrGI	TGTACA	1 cut(s)	675
BsrI	ACTGG	3 cut(s)	208, 454, 1004
BssAI	RCCGGY	1 cut(s)	738
BssECI	CCNNGG	2 cut(s)	159, 549
BssMI	GATC	5 cut(s)	238, 421, 445, 628, 970
BssSI	CACGAG	1 cut(s)	125
BssT1I	CCWWGG	1 cut(s)	549
Bst2BI	CACGAG	1 cut(s)	125
Bst2UI	CCWGG	2 cut(s)	727, 734
Bst4CI	ACNGT	3 cut(s)	340, 672, 949
Bst6I	CTCTTC	2 cut(s)	293, 677
BstAPI	GCANNNNNTGC	1 cut(s)	1025
BstAUI	TGTACA	1 cut(s)	675
BstC8I	GCNNGC	3 cut(s)	94, 723, 1012
BstDEI	CTNAG	1 cut(s)	530
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	610
BstKTI	GATC	5 cut(s)	241, 424, 448, 631, 973
BstMAI	GTCTC	2 cut(s)	191, 887
BstMBI	GATC	5 cut(s)	238, 421, 445, 628, 970
BstMWI	GCNNNNNNNGC	8 cut(s)	102, 506, 515, 587, 722, 923, 1016, 1025
BstNI	CCWGG	2 cut(s)	727, 734
BstSCI	CCNGG	2 cut(s)	725, 732
BstSFI	CTRYAG	2 cut(s)	336, 888
BstUI	CGCG	1 cut(s)	610
BstV2I	GAAGAC	2 cut(s)	458, 496
BstXI	CCANNNNNNTGG	1 cut(s)	733
BsuRI	GGCC	6 cut(s)	5, 176, 231, 725, 742, 759
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	2 cut(s)	461, 941
BveI	ACCTGC	2 cut(s)	721, 1010
Cac8I	GCNNGC	3 cut(s)	94, 723, 1012
CaiI	CAGNNNCTG	1 cut(s)	1025
CfoI	GCGC	1 cut(s)	610
Cfr10I	RCCGGY	1 cut(s)	738
Cfr13I	GGNCC	8 cut(s)	4, 174, 198, 438, 736, 773, 988, 1022
Csp6I	GTAC	1 cut(s)	676
CviAII	CATG	4 cut(s)	578, 641, 679, 717
CviQI	GTAC	1 cut(s)	676
DdeI	CTNAG	1 cut(s)	530
DpnI	GATC	5 cut(s)	240, 423, 447, 630, 972
DpnII	GATC	5 cut(s)	238, 421, 445, 628, 970
EaeI	YGGCCR	2 cut(s)	740, 757
Eam1104I	CTCTTC	2 cut(s)	293, 677
EarI	CTCTTC	2 cut(s)	293, 677
EciI	GGCGGA	2 cut(s)	62, 272
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	549
Eco24I	GRGCYC	1 cut(s)	171
Eco47I	GGWCC	6 cut(s)	198, 438, 736, 773, 988, 1022
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoO109I	RGGNCCY	3 cut(s)	438, 773, 1022
EcoRII	CCWGG	2 cut(s)	725, 732
EcoT14I	CCWWGG	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	4 cut(s)	581, 644, 682, 720
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FaqI	GGGAC	3 cut(s)	326, 451, 759
FatI	CATG	4 cut(s)	577, 640, 678, 716
Fnu4HI	GCNGC	6 cut(s)	76, 79, 177, 180, 812, 927
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	6 cut(s)	76, 79, 177, 180, 812, 927
FspBI	CTAG	1 cut(s)	770
GlaI	GCGC	1 cut(s)	609
GluI	GCNGC	6 cut(s)	76, 79, 177, 180, 812, 927
GsaI	CCCAGC	1 cut(s)	780
GsuI	CTGGAG	1 cut(s)	884
HaeIII	GGCC	6 cut(s)	5, 176, 231, 725, 742, 759
HapII	CCGG	2 cut(s)	374, 739
HhaI	GCGC	1 cut(s)	610
Hin1II	CATG	4 cut(s)	581, 644, 682, 720
Hin6I	GCGC	1 cut(s)	608
HinP1I	GCGC	1 cut(s)	608
HinfI	GANTC	3 cut(s)	128, 895, 938
HpaII	CCGG	2 cut(s)	374, 739
HphI	GGTGA	2 cut(s)	79, 428
Hpy166II	GTNNAC	4 cut(s)	132, 405, 830, 849
Hpy188I	TCNGA	2 cut(s)	531, 970
Hpy188III	TCNNGA	1 cut(s)	470
Hpy8I	GTNNAC	4 cut(s)	132, 405, 830, 849
HpyAV	CCTTC	4 cut(s)	143, 211, 298, 741
HpyCH4III	ACNGT	3 cut(s)	340, 672, 949
HpyCH4IV	ACGT	2 cut(s)	224, 286
HpyCH4V	TGCA	7 cut(s)	105, 518, 559, 716, 890, 1019, 1028
HpyF10VI	GCNNNNNNNGC	8 cut(s)	102, 506, 515, 587, 722, 923, 1016, 1025
HpyF3I	CTNAG	1 cut(s)	530
HpySE526I	ACGT	2 cut(s)	224, 286
Hsp92II	CATG	4 cut(s)	581, 644, 682, 720
HspAI	GCGC	1 cut(s)	608
KflI	GGGWCCC	1 cut(s)	438
Kzo9I	GATC	5 cut(s)	238, 421, 445, 628, 970
LmnI	GCTCC	3 cut(s)	259, 506, 909
MaeI	CTAG	1 cut(s)	770
MaeII	ACGT	2 cut(s)	224, 286
MaeIII	GTNAC	1 cut(s)	704
MalI	GATC	5 cut(s)	240, 423, 447, 630, 972
MboI	GATC	5 cut(s)	238, 421, 445, 628, 970
MboII	GAAGA	6 cut(s)	310, 431, 458, 498, 501, 694
MhlI	GDGCHC	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	759
MluCI	AATT	2 cut(s)	353, 956
MluNI	TGGCCA	1 cut(s)	759
MlyI	GAGTC	3 cut(s)	137, 889, 932
Mox20I	TGGCCA	1 cut(s)	759
MscI	TGGCCA	1 cut(s)	759
MseI	TTAA	1 cut(s)	450
MslI	CAYNNNNRTG	1 cut(s)	564
Msp20I	TGGCCA	1 cut(s)	759
MspA1I	CMGCKG	1 cut(s)	780
MspI	CCGG	2 cut(s)	374, 739
MspR9I	CCNGG	2 cut(s)	727, 734
MvaI	CCWGG	2 cut(s)	727, 734
MvnI	CGCG	1 cut(s)	610
MwoI	GCNNNNNNNGC	8 cut(s)	102, 506, 515, 587, 722, 923, 1016, 1025
NdeII	GATC	5 cut(s)	238, 421, 445, 628, 970
NlaIII	CATG	4 cut(s)	581, 644, 682, 720
NlaIV	GGNNCC	5 cut(s)	439, 440, 731, 775, 990
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	704
PfoI	TCCNGGA	1 cut(s)	732
PkrI	GCNGC	6 cut(s)	77, 80, 178, 181, 813, 928
PleI	GAGTC	3 cut(s)	136, 889, 932
PpsI	GAGTC	3 cut(s)	136, 889, 932
PpuMI	RGGWCCY	3 cut(s)	438, 773, 1022
Psp124BI	GAGCTC	1 cut(s)	171
Psp5II	RGGWCCY	3 cut(s)	438, 773, 1022
Psp6I	CCWGG	2 cut(s)	725, 732
PspFI	CCCAGC	1 cut(s)	776
PspGI	CCWGG	2 cut(s)	725, 732
PspN4I	GGNNCC	5 cut(s)	439, 440, 731, 775, 990
PspPI	GGNCC	8 cut(s)	4, 174, 198, 438, 736, 773, 988, 1022
PspPPI	RGGWCCY	3 cut(s)	438, 773, 1022
PstI	CTGCAG	1 cut(s)	892
PstNI	CAGNNNCTG	1 cut(s)	1025
RsaI	GTAC	1 cut(s)	677
RsaNI	GTAC	1 cut(s)	676
RseI	CAYNNNNRTG	1 cut(s)	564
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	6 cut(s)	76, 79, 177, 180, 812, 927
Sau3AI	GATC	5 cut(s)	238, 421, 445, 628, 970
Sau96I	GGNCC	8 cut(s)	4, 174, 198, 438, 736, 773, 988, 1022
SchI	GAGTC	3 cut(s)	137, 889, 932
ScrFI	CCNGG	2 cut(s)	727, 734
SduI	GDGCHC	1 cut(s)	171
SfcI	CTRYAG	2 cut(s)	336, 888
SinI	GGWCC	6 cut(s)	198, 438, 736, 773, 988, 1022
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	2 cut(s)	353, 956
SspMI	CTAG	1 cut(s)	770
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	725, 732
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	3 cut(s)	340, 672, 949
TaiI	ACGT	2 cut(s)	227, 289
TaqI	TCGA	1 cut(s)	424
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	353, 956
TatI	WGTACW	1 cut(s)	675
TauI	GCSGC	6 cut(s)	78, 81, 179, 182, 814, 929
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	2 cut(s)	461, 948
TseFI	GTSAC	1 cut(s)	704
Tsp45I	GTSAC	1 cut(s)	704
TspDTI	ATGAA	4 cut(s)	357, 629, 672, 695
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	2 cut(s)	461, 948
VpaK11BI	GGWCC	6 cut(s)	198, 438, 736, 773, 988, 1022
XapI	RAATTY	1 cut(s)	956
XspI	CTAG	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.