Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006349

Physical Location & Seq

Genomic Coordinates Reverse (-)

32846126 .. 32848797

Gene Structure 2672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1262600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCGCTTCTCTCTCCTCCTCATCCTCTCCCAGCCCAATTTTCTGCTTCCACCGCCTCTCTACTCGTCCGCCGCCGCCCTACCACCGCCTGCCACGTATGCACCCCCAAGGAAGCCGTACATCGGGTCGACCCGTCCGCGCTCACTCTTGCCGAGAGTTTGTCGGAGAACGAGCTATGGGCCGCCGCTTGTCTCCGCGTTCGCTCCTTCTACCAGTTCAAACCCTCCACGTTCGGCCTCCAAGATCACAGAAGGTACTTGGCGGAACGGGAGTTTGAAGCGATGAAGGAACGTGTTGGTGGAAAGAGGAAGGGTTTCAGAAGAGTTTCGTGCATAAATGCTTCAGTCCCTTTGTCACAAATTTCTAGCCTTTCTGTGTCAGATGAATTTTGTGCTGAATGTAAGTTTAACAAGGATGGAGAAGATCGAGTGGTGGTTGGGACTCTTGATCTTAACCAGTGTGTAAGTCTTCCAGATGAGATTTCAGGAATCAAGCCAGAGGGGATTGGAGCTGATTTTGCAAGGGCATACCTGAGTAATGTATGTGTTGCTAAAGAAATGCATAGAAATGGGCTAGGTTATGCTCTTGTTTCAAAATCAAAGTTAGTTGCGCAAGAATGGGGCATAAGTGATCTGTATGTTCATGTTGCTGTTGATAATGAACCTGCAAAAAGGTTGTACATGAAGAGTGGTTTTGTTTATGAAAACGACGAGCCTGCATGGCAGGCGAGGTTCCTAGACCGGCCACGAAGGATACTTTTGTGGTTTGGCATCCCAGGGGTGCAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

264

Amino Acids

29.37

Weight (kDa)

8.6

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	144 - 232	1.2e-09	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	172 - 233	8.6e-06	Acetyltransferase (GNAT) domain
FR47	PF08445	176 - 233	4.2e-06	FR47-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28030 AT4G28030
fragaria_vesca	FvH4_4g23510 FvH4_4g23510 FvH4_4g23510
malus_domestica	MD16G1262600.v1.1
prunus_persica	Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1
pyrus_communis	pycom16g23150
rosa_chinensis	RchiOBHm_Chr4g0404931
rosa_laevigata	RLG00000008895
rosa_multiflora	Rmu_sc0000358.1_g000020 Rmu_sc0024668.1_g000003
rosa_roxburghii	Rroxscaffold_5G00349050
rosa_rugosa	Rorug04G0049700
rosa_samantha	Rh4AG126000 Rh4BG120200 Rh4CG134200 Rh4DG119600
rosa_wichuraiana	Rw4G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	612
Acc36I	ACCTGC	1 cut(s)	673
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	2 cut(s)	140, 198
AcoI	YGGCCR	1 cut(s)	743
AcsI	RAATTY	2 cut(s)	360, 386
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	3 cut(s)	120, 257, 680
AfiI	CCNNNNNNNGG	1 cut(s)	123
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	3 cut(s)	220, 278, 594
AjnI	CCWGG	1 cut(s)	775
AluBI	AGCT	2 cut(s)	175, 512
AluI	AGCT	2 cut(s)	175, 512
Alw26I	GTCTC	1 cut(s)	197
AoxI	GGCC	3 cut(s)	180, 235, 743
ApoI	RAATTY	2 cut(s)	360, 386
Asp700I	GAANNNNTTC	2 cut(s)	314, 325
AspLEI	GCGC	3 cut(s)	7, 142, 613
AspS9I	GGNCC	1 cut(s)	180
BaeI	ACNNNNGTAYC	2 cut(s)	746, 779
BbsI	GAAGAC	1 cut(s)	461
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	1 cut(s)	101
BcgI	CGANNNNNNTGC	2 cut(s)	698, 732
BciT130I	CCWGG	1 cut(s)	777
BciVI	GTATCC	1 cut(s)	747
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	3 cut(s)	366, 575, 737
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	673
BfuI	GTATCC	1 cut(s)	747
BglI	GCCNNNNNGGC	1 cut(s)	721
BisI	GCNGC	4 cut(s)	73, 76, 183, 186
BlsI	GCNGC	4 cut(s)	74, 77, 184, 187
Bme1390I	CCNGG	1 cut(s)	777
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	1 cut(s)	734
BmrFI	CCNGG	1 cut(s)	777
BmsI	GCATC	1 cut(s)	780
BpiI	GAAGAC	1 cut(s)	461
BsaAI	YACGTR	1 cut(s)	97
BsaJI	CCNNGG	3 cut(s)	108, 775, 776
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	741
Bse1I	ACTGG	2 cut(s)	214, 457
BseBI	CCWGG	1 cut(s)	777
BseDI	CCNNGG	3 cut(s)	108, 775, 776
BseGI	GGATG	3 cut(s)	22, 421, 771
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	524
BseNI	ACTGG	2 cut(s)	214, 457
BseRI	GAGGAG	2 cut(s)	6, 9
BseYI	CCCAGC	1 cut(s)	31
Bsh1236I	CGCG	2 cut(s)	140, 198
BshFI	GGCC	3 cut(s)	182, 237, 745
BsiSI	CCGG	1 cut(s)	742
BslFI	GGGAC	2 cut(s)	332, 454
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	2 cut(s)	332, 454
BsnI	GGCC	3 cut(s)	182, 237, 745
Bsp1407I	TGTACA	1 cut(s)	678
Bsp143I	GATC	4 cut(s)	244, 424, 448, 631
BspANI	GGCC	3 cut(s)	182, 237, 745
BspCNI	CTCAG	1 cut(s)	525
BspFNI	CGCG	2 cut(s)	140, 198
BspLI	GGNNCC	1 cut(s)	734
BspMI	ACCTGC	1 cut(s)	673
BsrFI	RCCGGY	1 cut(s)	741
BsrGI	TGTACA	1 cut(s)	678
BsrI	ACTGG	2 cut(s)	214, 457
BssAI	RCCGGY	1 cut(s)	741
BssECI	CCNNGG	3 cut(s)	108, 775, 776
BssMI	GATC	4 cut(s)	244, 424, 448, 631
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	777
Bst6I	CTCTTC	2 cut(s)	316, 680
BstAUI	TGTACA	1 cut(s)	678
BstBAI	YACGTR	1 cut(s)	97
BstC8I	GCNNGC	3 cut(s)	91, 717, 726
BstDEI	CTNAG	1 cut(s)	533
BstF5I	GGATG	3 cut(s)	22, 421, 771
BstFNI	CGCG	2 cut(s)	140, 198
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	3 cut(s)	7, 142, 613
BstKTI	GATC	4 cut(s)	247, 427, 451, 634
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	4 cut(s)	244, 424, 448, 631
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 99, 518, 721, 725
BstNI	CCWGG	1 cut(s)	777
BstSCI	CCNGG	1 cut(s)	775
BstUI	CGCG	2 cut(s)	140, 198
BstV2I	GAAGAC	1 cut(s)	461
BsuI	GTATCC	1 cut(s)	747
BsuRI	GGCC	3 cut(s)	182, 237, 745
BtgZI	GCGATG	1 cut(s)	296
BtsCI	GGATG	3 cut(s)	22, 421, 771
BtsIMutI	CAGTG	1 cut(s)	464
BveI	ACCTGC	1 cut(s)	673
Cac8I	GCNNGC	3 cut(s)	91, 717, 726
CfoI	GCGC	3 cut(s)	7, 142, 613
Cfr10I	RCCGGY	1 cut(s)	741
Cfr13I	GGNCC	1 cut(s)	180
Csp6I	GTAC	3 cut(s)	119, 256, 679
CviAII	CATG	3 cut(s)	644, 682, 720
CviQI	GTAC	3 cut(s)	119, 256, 679
DdeI	CTNAG	1 cut(s)	533
DpnI	GATC	4 cut(s)	246, 426, 450, 633
DpnII	GATC	4 cut(s)	244, 424, 448, 631
EaeI	YGGCCR	1 cut(s)	743
Eam1104I	CTCTTC	2 cut(s)	316, 680
EarI	CTCTTC	2 cut(s)	316, 680
EciI	GGCGGA	2 cut(s)	59, 278
Eco130I	CCWWGG	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	327
EcoRII	CCWGG	1 cut(s)	775
EcoT14I	CCWWGG	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	3 cut(s)	647, 685, 723
FaqI	GGGAC	2 cut(s)	332, 454
FatI	CATG	3 cut(s)	643, 681, 719
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	4 cut(s)	73, 76, 183, 186
FokI	GGATG	3 cut(s)	9, 428, 758
Fsp4HI	GCNGC	4 cut(s)	73, 76, 183, 186
FspBI	CTAG	3 cut(s)	366, 575, 737
FspI	TGCGCA	1 cut(s)	612
GlaI	GCGC	3 cut(s)	6, 141, 612
GluI	GCNGC	4 cut(s)	73, 76, 183, 186
GsaI	CCCAGC	1 cut(s)	35
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	182, 237, 745
HapII	CCGG	1 cut(s)	742
HhaI	GCGC	3 cut(s)	7, 142, 613
Hin1II	CATG	3 cut(s)	647, 685, 723
Hin6I	GCGC	3 cut(s)	5, 140, 611
HinP1I	GCGC	3 cut(s)	5, 140, 611
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	2 cut(s)	442, 489
HpaII	CCGG	1 cut(s)	742
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	166, 320, 382
Hpy188III	TCNNGA	3 cut(s)	446, 473, 486
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	713
HpyAV	CCTTC	5 cut(s)	217, 246, 280, 304, 744
HpyCH4IV	ACGT	3 cut(s)	96, 230, 292
HpyCH4V	TGCA	7 cut(s)	102, 333, 521, 562, 668, 719, 784
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 99, 518, 721, 725
HpyF3I	CTNAG	1 cut(s)	533
HpySE526I	ACGT	3 cut(s)	96, 230, 292
Hsp92II	CATG	3 cut(s)	647, 685, 723
HspAI	GCGC	3 cut(s)	5, 140, 611
Kzo9I	GATC	4 cut(s)	244, 424, 448, 631
LmnI	GCTCC	2 cut(s)	209, 509
LweI	GCATC	1 cut(s)	780
MaeI	CTAG	3 cut(s)	366, 575, 737
MaeII	ACGT	3 cut(s)	96, 230, 292
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	4 cut(s)	246, 426, 450, 633
MboI	GATC	4 cut(s)	244, 424, 448, 631
MboII	GAAGA	4 cut(s)	333, 434, 461, 697
MluCI	AATT	3 cut(s)	38, 360, 386
MlyI	GAGTC	1 cut(s)	436
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	9 cut(s)	27, 30, 36, 67, 235, 248, 300, 493, 723
Mph1103I	ATGCAT	1 cut(s)	564
MroXI	GAANNNNTTC	2 cut(s)	314, 325
MseI	TTAA	2 cut(s)	408, 453
MslI	CAYNNNNRTG	1 cut(s)	567
MspI	CCGG	1 cut(s)	742
MspR9I	CCNGG	1 cut(s)	777
MvaI	CCWGG	1 cut(s)	777
MvnI	CGCG	2 cut(s)	140, 198
MwoI	GCNNNNNNNGC	5 cut(s)	53, 99, 518, 721, 725
NdeII	GATC	4 cut(s)	244, 424, 448, 631
NlaIII	CATG	3 cut(s)	647, 685, 723
NlaIV	GGNNCC	1 cut(s)	734
NmeAIII	GCCGAG	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	354
NsbI	TGCGCA	1 cut(s)	612
NsiI	ATGCAT	1 cut(s)	564
PasI	CCCWGGG	1 cut(s)	776
PdmI	GAANNNNTTC	2 cut(s)	314, 325
PfeI	GAWTC	1 cut(s)	489
PkrI	GCNGC	4 cut(s)	74, 77, 184, 187
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
Ppu21I	YACGTR	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	775
PspFI	CCCAGC	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	775
PspN4I	GGNNCC	1 cut(s)	734
PspPI	GGNCC	1 cut(s)	180
RsaI	GTAC	3 cut(s)	120, 257, 680
RsaNI	GTAC	3 cut(s)	119, 256, 679
RseI	CAYNNNNRTG	1 cut(s)	567
SalI	GTCGAC	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	408, 453
SatI	GCNGC	4 cut(s)	73, 76, 183, 186
Sau3AI	GATC	4 cut(s)	244, 424, 448, 631
Sau96I	GGNCC	1 cut(s)	180
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	1 cut(s)	777
SfaNI	GCATC	1 cut(s)	780
SmiMI	CAYNNNNRTG	1 cut(s)	567
Sse9I	AATT	3 cut(s)	38, 360, 386
SspMI	CTAG	3 cut(s)	366, 575, 737
StyD4I	CCNGG	1 cut(s)	775
StyI	CCWWGG	1 cut(s)	108
TaiI	ACGT	3 cut(s)	99, 233, 295
TaqI	TCGA	2 cut(s)	129, 427
TasI	AATT	3 cut(s)	38, 360, 386
TatI	WGTACW	1 cut(s)	678
TauI	GCSGC	4 cut(s)	75, 78, 185, 188
TfiI	GAWTC	1 cut(s)	489
Tru1I	TTAA	2 cut(s)	408, 453
Tru9I	TTAA	2 cut(s)	408, 453
TscAI	CASTG	1 cut(s)	464
TseFI	GTSAC	1 cut(s)	354
Tsp45I	GTSAC	1 cut(s)	354
TspDTI	ATGAA	6 cut(s)	299, 399, 632, 675, 698, 717
TspRI	CASTG	1 cut(s)	464
XapI	RAATTY	2 cut(s)	360, 386
XmiI	GTMKAC	1 cut(s)	129
XmnI	GAANNNNTTC	2 cut(s)	314, 325
XspI	CTAG	3 cut(s)	366, 575, 737
Zsp2I	ATGCAT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.