Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0006349

Physical Location & Seq

Genomic Coordinates Forward (+)

23427917 .. 23430081

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G010190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCCCTCCTATCATCTCCTCGTCCTCTCCCAACCCACTTCTCTGCTTCCACCTCCACTTCTCTACTTGTCCGCCGCCGCCCAATCACCGCCTGCCAAGTCTGCACCCCCAAGCAACCCTTAAACGAGTCCACTCTCAATGTCGCCGAAGGTTTTACCGAGGATGAGCTCTGGGCCGCCGCCTGTCTCCGTGTTCGGTCCTTCTACCAGTTCAAGCCCTCCACGTTCGGCCTCCAAGATCACAAAAAGTTCTTGGCGGAGCGAGAGTTTGAAGCTATCAAGGAACGTGTTGGTGGGAAGAGGAAGGGTTTTGGGAGAGTGTCGTGTATAAATGCTACAGTCCCACTTTCGCAATTCTCAGGCCTTTCATTTCCGGCAGATGATTTATGTGCTTCCTGTAAGTTTACCGACAATGGAGAAGATCGAGTAGTAGTTGGGACCCTTGATCTTAACCAGTGTGTAAGTCTTCCAGATGAGATAGCAGGAAGAAGACCAGAGGCGATTGGAGCTGATTTTGCAAGGGCATATCTGAGTAATGTATGTGTTGCCAAGGAACTGCATAGAAATGGTTTAGGTCATGCTCTTGTGGCAAAGTCAAAGTTAGTTGCGCGAGATTGGGGTAAAGAATTTTTGACATTTATTATGTTCTTGATTAAACACCCTCACGCATACTCAATTTTGTTGGTACCATGCTCCTTAACCTATCTCTTGCTTTATGGCTTTAGAGTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

244

Amino Acids

27.04

Weight (kDa)

8.98

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28030 AT4G28030
fragaria_vesca	FvH4_4g23510 FvH4_4g23510 FvH4_4g23510
malus_domestica	MD16G1262600.v1.1
prunus_persica	Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1
pyrus_communis	pycom16g23150
rosa_chinensis	RchiOBHm_Chr4g0404931
rosa_laevigata	RLG00000008895
rosa_multiflora	Rmu_sc0000358.1_g000020 Rmu_sc0024668.1_g000003
rosa_roxburghii	Rroxscaffold_5G00349050
rosa_rugosa	Rorug04G0049700
rosa_samantha	Rh4AG126000 Rh4BG120200 Rh4CG134200 Rh4DG119600
rosa_wichuraiana	Rw4G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	685
AccB1I	GGYRCC	1 cut(s)	685
AccII	CGCG	1 cut(s)	610
AciI	CCGC	7 cut(s)	73, 76, 79, 90, 177, 180, 257
AcsI	RAATTY	1 cut(s)	626
AfaI	GTAC	1 cut(s)	687
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	214, 272
AluBI	AGCT	3 cut(s)	169, 275, 509
AluI	AGCT	3 cut(s)	169, 275, 509
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	191
AoxI	GGCC	4 cut(s)	3, 174, 229, 361
ApoI	RAATTY	1 cut(s)	626
Asp718I	GGTACC	1 cut(s)	685
AspLEI	GCGC	1 cut(s)	610
AspS9I	GGNCC	4 cut(s)	4, 174, 198, 438
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	2 cut(s)	198, 438
BanI	GGYRCC	1 cut(s)	685
BanII	GRGCYC	1 cut(s)	171
BbsI	GAAGAC	2 cut(s)	458, 496
Bbv12I	GWGCWC	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	336
BisI	GCNGC	4 cut(s)	76, 79, 177, 180
BlsI	GCNGC	4 cut(s)	77, 80, 178, 181
Bme18I	GGWCC	2 cut(s)	198, 438
BmgT120I	GGNCC	4 cut(s)	4, 174, 198, 438
BmiI	GGNNCC	3 cut(s)	439, 440, 687
BpiI	GAAGAC	2 cut(s)	458, 496
BsaJI	CCNNGG	2 cut(s)	159, 549
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bse1I	ACTGG	2 cut(s)	208, 454
BseDI	CCNNGG	2 cut(s)	159, 549
BseGI	GGATG	1 cut(s)	169
BseMII	CTCAG	2 cut(s)	372, 521
BseNI	ACTGG	2 cut(s)	208, 454
BseRI	GAGGAG	1 cut(s)	9
BsgI	GTGCAG	1 cut(s)	88
Bsh1236I	CGCG	1 cut(s)	610
BshFI	GGCC	4 cut(s)	5, 176, 231, 363
BshNI	GGYRCC	1 cut(s)	685
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	374
BslFI	GGGAC	2 cut(s)	326, 451
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	2 cut(s)	326, 451
BsnI	GGCC	4 cut(s)	5, 176, 231, 363
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	238, 421, 445
BspACI	CCGC	7 cut(s)	73, 76, 79, 90, 177, 180, 257
BspANI	GGCC	4 cut(s)	5, 176, 231, 363
BspCNI	CTCAG	2 cut(s)	371, 522
BspFNI	CGCG	1 cut(s)	610
BspLI	GGNNCC	3 cut(s)	439, 440, 687
BspT107I	GGYRCC	1 cut(s)	685
BsrI	ACTGG	2 cut(s)	208, 454
BssECI	CCNNGG	2 cut(s)	159, 549
BssMI	GATC	3 cut(s)	238, 421, 445
BssT1I	CCWWGG	1 cut(s)	549
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	2 cut(s)	358, 530
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	610
BstKTI	GATC	3 cut(s)	241, 424, 448
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	3 cut(s)	238, 421, 445
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 506, 515, 587
BstSFI	CTRYAG	1 cut(s)	336
BstUI	CGCG	1 cut(s)	610
BstV2I	GAAGAC	2 cut(s)	458, 496
BsuRI	GGCC	4 cut(s)	5, 176, 231, 363
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	461
Cac8I	GCNNGC	1 cut(s)	94
CfoI	GCGC	1 cut(s)	610
Cfr13I	GGNCC	4 cut(s)	4, 174, 198, 438
Csp6I	GTAC	1 cut(s)	686
CviAII	CATG	2 cut(s)	578, 690
CviJI	RGCY	9 cut(s)	5, 169, 176, 217, 231, 275, 363, 509, 720
CviKI_1	RGCY	9 cut(s)	5, 169, 176, 217, 231, 275, 363, 509, 720
CviQI	GTAC	1 cut(s)	686
DdeI	CTNAG	2 cut(s)	358, 530
DpnI	GATC	3 cut(s)	240, 423, 447
DpnII	GATC	3 cut(s)	238, 421, 445
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
EciI	GGCGGA	2 cut(s)	62, 272
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	549
Eco147I	AGGCCT	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	171
Eco47I	GGWCC	2 cut(s)	198, 438
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	438
EcoT14I	CCWWGG	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	2 cut(s)	581, 693
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FaqI	GGGAC	2 cut(s)	326, 451
FatI	CATG	2 cut(s)	577, 689
Fnu4HI	GCNGC	4 cut(s)	76, 79, 177, 180
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	4 cut(s)	76, 79, 177, 180
GlaI	GCGC	1 cut(s)	609
GluI	GCNGC	4 cut(s)	76, 79, 177, 180
HaeIII	GGCC	4 cut(s)	5, 176, 231, 363
HapII	CCGG	1 cut(s)	374
HhaI	GCGC	1 cut(s)	610
Hin1II	CATG	2 cut(s)	581, 693
Hin6I	GCGC	1 cut(s)	608
HinP1I	GCGC	1 cut(s)	608
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	2 cut(s)	132, 405
Hpy188I	TCNGA	1 cut(s)	531
Hpy188III	TCNNGA	2 cut(s)	470, 649
Hpy8I	GTNNAC	2 cut(s)	132, 405
HpyAV	CCTTC	3 cut(s)	143, 211, 298
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	2 cut(s)	224, 286
HpyCH4V	TGCA	3 cut(s)	105, 518, 559
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 506, 515, 587
HpyF3I	CTNAG	2 cut(s)	358, 530
HpySE526I	ACGT	2 cut(s)	224, 286
Hsp92II	CATG	2 cut(s)	581, 693
HspAI	GCGC	1 cut(s)	608
KflI	GGGWCCC	1 cut(s)	438
KpnI	GGTACC	1 cut(s)	689
Kzo9I	GATC	3 cut(s)	238, 421, 445
LmnI	GCTCC	3 cut(s)	259, 506, 698
MaeII	ACGT	2 cut(s)	224, 286
MalI	GATC	3 cut(s)	240, 423, 447
MboI	GATC	3 cut(s)	238, 421, 445
MboII	GAAGA	5 cut(s)	310, 431, 458, 498, 501
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	3 cut(s)	353, 626, 675
MlyI	GAGTC	1 cut(s)	137
MseI	TTAA	4 cut(s)	122, 450, 654, 698
MslI	CAYNNNNRTG	1 cut(s)	564
MspI	CCGG	1 cut(s)	374
MvnI	CGCG	1 cut(s)	610
MwoI	GCNNNNNNNGC	4 cut(s)	102, 506, 515, 587
NdeII	GATC	3 cut(s)	238, 421, 445
NlaIII	CATG	2 cut(s)	581, 693
NlaIV	GGNNCC	3 cut(s)	439, 440, 687
PceI	AGGCCT	1 cut(s)	363
PkrI	GCNGC	4 cut(s)	77, 80, 178, 181
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	438
Psp124BI	GAGCTC	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	438
PspN4I	GGNNCC	3 cut(s)	439, 440, 687
PspPI	GGNCC	4 cut(s)	4, 174, 198, 438
PspPPI	RGGWCCY	1 cut(s)	438
RsaI	GTAC	1 cut(s)	687
RsaNI	GTAC	1 cut(s)	686
RseI	CAYNNNNRTG	1 cut(s)	564
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	4 cut(s)	122, 450, 654, 698
SatI	GCNGC	4 cut(s)	76, 79, 177, 180
Sau3AI	GATC	3 cut(s)	238, 421, 445
Sau96I	GGNCC	4 cut(s)	4, 174, 198, 438
SchI	GAGTC	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	9 cut(s)	56, 154, 171, 227, 277, 289, 511, 577, 704
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	2 cut(s)	198, 438
SmiMI	CAYNNNNRTG	1 cut(s)	564
Sse9I	AATT	3 cut(s)	353, 626, 675
SseBI	AGGCCT	1 cut(s)	363
SsiI	CCGC	7 cut(s)	73, 76, 79, 90, 177, 180, 257
SstI	GAGCTC	1 cut(s)	171
StuI	AGGCCT	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	2 cut(s)	227, 289
TaqI	TCGA	1 cut(s)	424
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	3 cut(s)	353, 626, 675
TauI	GCSGC	4 cut(s)	78, 81, 179, 182
Tru1I	TTAA	4 cut(s)	122, 450, 654, 698
Tru9I	TTAA	4 cut(s)	122, 450, 654, 698
TscAI	CASTG	1 cut(s)	461
TspDTI	ATGAA	1 cut(s)	357
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	461
VpaK11BI	GGWCC	2 cut(s)	198, 438
XapI	RAATTY	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.