Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006349

Physical Location & Seq

Genomic Coordinates Forward (+)

19001547 .. 19003689

Gene Structure 2143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG119600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCCCTCCTATCATCTCCTCGTCCTCTCCCAACCCACTTCTCTGCTTCCACCTCCACTTCTCTACTTGTCCGCCGCCGCCCAATCACCGCCTGCCAAGTCTGCACCCCCAAGCAACCCTTAAACGAGTCCACTCTCAATGTCGCCGAAGGTTTTACCGAGGATGAGCTCTGGGCCGCCGCCTGTCTCCGTGTTCGGTCCTTCTACCAGTTCAAGCCCTCCACGTTCGGCCTCCAAGATCACAAAAAGTTCTTGGCGGAGCGAGAGTTTGAAGCTATCAAGGAACGTGTTGGTGGGAAGAGGAAGGGTTTTGGGAGAGTGTCGTGTATAAATGCTACAGTCCCACTTTCGCAATTCTCAGGCCTTTCATTTCCGGCAGATGATTTATGTGCTTCCTGTAAGTTTACCGACAATGGAGAAGATCGAGTAGTAGTTGGGACCCTTGATCTTAACCAGTGTGTAAGTCTTCCAGATGAGATAGCAGGAAGAAGACCAGAGGTATTTCATCCCATGCCAGCCTTTTTCACTCTGATCTTTGAAAGGCAGACGCTAATTATCTTCTTAGTCATATTTCGTTTCAAGTTTCAACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

197

Amino Acids

22.14

Weight (kDa)

8.74

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28030 AT4G28030
fragaria_vesca	FvH4_4g23510 FvH4_4g23510 FvH4_4g23510
malus_domestica	MD16G1262600.v1.1
prunus_persica	Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1 Prupe.1G097300_v2.0.a1
pyrus_communis	pycom16g23150
rosa_chinensis	RchiOBHm_Chr4g0404931
rosa_laevigata	RLG00000008895
rosa_multiflora	Rmu_sc0000358.1_g000020 Rmu_sc0024668.1_g000003
rosa_roxburghii	Rroxscaffold_5G00349050
rosa_rugosa	Rorug04G0049700
rosa_samantha	Rh4AG126000 Rh4BG120200 Rh4CG134200 Rh4DG119600
rosa_wichuraiana	Rw4G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	73, 76, 79, 90, 177, 180, 257
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	5 cut(s)	214, 272, 539, 580, 587
AluBI	AGCT	2 cut(s)	169, 275
AluI	AGCT	2 cut(s)	169, 275
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	191
AoxI	GGCC	4 cut(s)	3, 174, 229, 361
AspS9I	GGNCC	4 cut(s)	4, 174, 198, 438
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	2 cut(s)	198, 438
BanII	GRGCYC	1 cut(s)	171
BbsI	GAAGAC	2 cut(s)	458, 496
Bbv12I	GWGCWC	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	191
BfmI	CTRYAG	2 cut(s)	336, 590
BisI	GCNGC	4 cut(s)	76, 79, 177, 180
BlsI	GCNGC	4 cut(s)	77, 80, 178, 181
Bme18I	GGWCC	2 cut(s)	198, 438
BmgT120I	GGNCC	4 cut(s)	4, 174, 198, 438
BmiI	GGNNCC	2 cut(s)	439, 440
BpiI	GAAGAC	2 cut(s)	458, 496
BsaJI	CCNNGG	1 cut(s)	159
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bse1I	ACTGG	2 cut(s)	208, 454
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	2 cut(s)	169, 505
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	2 cut(s)	208, 454
BseRI	GAGGAG	1 cut(s)	9
BsgI	GTGCAG	1 cut(s)	88
BshFI	GGCC	4 cut(s)	5, 176, 231, 363
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	374
BslFI	GGGAC	2 cut(s)	326, 451
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	2 cut(s)	326, 451
BsnI	GGCC	4 cut(s)	5, 176, 231, 363
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	4 cut(s)	238, 421, 445, 531
BspACI	CCGC	7 cut(s)	73, 76, 79, 90, 177, 180, 257
BspANI	GGCC	4 cut(s)	5, 176, 231, 363
BspCNI	CTCAG	1 cut(s)	371
BspLI	GGNNCC	2 cut(s)	439, 440
BsrI	ACTGG	2 cut(s)	208, 454
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	4 cut(s)	238, 421, 445, 531
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	94, 516
BstDEI	CTNAG	2 cut(s)	358, 562
BstF5I	GGATG	2 cut(s)	169, 505
BstKTI	GATC	4 cut(s)	241, 424, 448, 534
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	4 cut(s)	238, 421, 445, 531
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstSFI	CTRYAG	2 cut(s)	336, 590
BstV2I	GAAGAC	2 cut(s)	458, 496
BsuRI	GGCC	4 cut(s)	5, 176, 231, 363
BtsCI	GGATG	2 cut(s)	169, 505
BtsIMutI	CAGTG	1 cut(s)	461
Cac8I	GCNNGC	2 cut(s)	94, 516
Cfr13I	GGNCC	4 cut(s)	4, 174, 198, 438
CseI	GACGC	1 cut(s)	556
CviAII	CATG	1 cut(s)	511
CviJI	RGCY	8 cut(s)	5, 169, 176, 217, 231, 275, 363, 518
CviKI_1	RGCY	8 cut(s)	5, 169, 176, 217, 231, 275, 363, 518
DdeI	CTNAG	2 cut(s)	358, 562
DpnI	GATC	4 cut(s)	240, 423, 447, 533
DpnII	GATC	4 cut(s)	238, 421, 445, 531
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
EciI	GGCGGA	2 cut(s)	62, 272
Ecl136II	GAGCTC	1 cut(s)	169
Eco147I	AGGCCT	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	171
Eco47I	GGWCC	2 cut(s)	198, 438
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	171
FaeI	CATG	1 cut(s)	514
FaiI	YATR	5 cut(s)	329, 388, 512, 569, 592
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FaqI	GGGAC	2 cut(s)	326, 451
FatI	CATG	1 cut(s)	510
Fnu4HI	GCNGC	4 cut(s)	76, 79, 177, 180
FokI	GGATG	2 cut(s)	176, 492
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	4 cut(s)	76, 79, 177, 180
GluI	GCNGC	4 cut(s)	76, 79, 177, 180
HaeIII	GGCC	4 cut(s)	5, 176, 231, 363
HapII	CCGG	1 cut(s)	374
HgaI	GACGC	1 cut(s)	556
Hin1II	CATG	1 cut(s)	514
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	2 cut(s)	132, 405
Hpy188I	TCNGA	1 cut(s)	531
Hpy188III	TCNNGA	1 cut(s)	470
Hpy8I	GTNNAC	2 cut(s)	132, 405
HpyAV	CCTTC	3 cut(s)	143, 211, 298
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	2 cut(s)	224, 286
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	2 cut(s)	358, 562
HpySE526I	ACGT	2 cut(s)	224, 286
Hsp92II	CATG	1 cut(s)	514
KflI	GGGWCCC	1 cut(s)	438
Kzo9I	GATC	4 cut(s)	238, 421, 445, 531
LmnI	GCTCC	1 cut(s)	259
MaeII	ACGT	2 cut(s)	224, 286
MalI	GATC	4 cut(s)	240, 423, 447, 533
MboI	GATC	4 cut(s)	238, 421, 445, 531
MboII	GAAGA	6 cut(s)	310, 431, 458, 498, 501, 550
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	2 cut(s)	353, 552
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	9 cut(s)	17, 30, 36, 64, 154, 229, 242, 294, 490
MseI	TTAA	2 cut(s)	122, 450
MspI	CCGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	102
NdeII	GATC	4 cut(s)	238, 421, 445, 531
NlaIII	CATG	1 cut(s)	514
NlaIV	GGNNCC	2 cut(s)	439, 440
PceI	AGGCCT	1 cut(s)	363
PkrI	GCNGC	4 cut(s)	77, 80, 178, 181
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	438
Psp124BI	GAGCTC	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	438
PspN4I	GGNNCC	2 cut(s)	439, 440
PspPI	GGNCC	4 cut(s)	4, 174, 198, 438
PspPPI	RGGWCCY	1 cut(s)	438
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	2 cut(s)	122, 450
SatI	GCNGC	4 cut(s)	76, 79, 177, 180
Sau3AI	GATC	4 cut(s)	238, 421, 445, 531
Sau96I	GGNCC	4 cut(s)	4, 174, 198, 438
SchI	GAGTC	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	7 cut(s)	56, 154, 171, 227, 277, 289, 501
SfcI	CTRYAG	2 cut(s)	336, 590
SinI	GGWCC	2 cut(s)	198, 438
Sse9I	AATT	2 cut(s)	353, 552
SseBI	AGGCCT	1 cut(s)	363
SsiI	CCGC	7 cut(s)	73, 76, 79, 90, 177, 180, 257
SstI	GAGCTC	1 cut(s)	171
StuI	AGGCCT	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	2 cut(s)	227, 289
TaqI	TCGA	1 cut(s)	424
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	353, 552
TauI	GCSGC	4 cut(s)	78, 81, 179, 182
Tru1I	TTAA	2 cut(s)	122, 450
Tru9I	TTAA	2 cut(s)	122, 450
TscAI	CASTG	1 cut(s)	461
TspDTI	ATGAA	2 cut(s)	357, 494
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	461
VpaK11BI	GGWCC	2 cut(s)	198, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.