AT4G28260

Zinc-finger of C2H2 type

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
14004401 .. 14006989
2589 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28260.1

Sequence Viewer

Length: 1551 bp
ATGGCTGAGAAGAAAGAATTAGGGTTACCAAAGCCTAGTATTAATTTGAAAGAGCAATTAGCAAGAACTACTCTGAAGAATCTGAGGTTACAAGGGCATACTTACATTGAGCTACGTGAGGATGGGAAACGTTTTGTATTCTTCTGCACTTTGTGTCTTGCTCCTTGCTACAGCGACACAATCTTGCTTGGGCACTTGAATGGAAACCTTCACAAGGAGAGATTGGCATGTGCTAGGATCACACTTCTTGGAACGAATCCTTGGCCTTTCAGTGATGGTGTACTTTTCTTTGATAGTTCAACTGGAGAAGAAGAAGAGAAATCTCCAGTTTCTGGTGGTGAAGGGGTTCCTGATACGTTGGAGCATTGTAGTGATGATGAAAGATTTGCTATTGTCAAGTATGATAACAACAAAACAAATGGAGATAATGTGCCTGCTGCAGTTACTGATGATGAACCTAGTCACGCTGCAGATGATCTGCTAATTTCTGGTGTGCTGATCAAGGAGAGAACTCTTGATGTTGAAGCAAAGTTCATTGGTTTTGGCCGAATAGCTGCCAGGTTGTTTGAAACGAAAGGACGCACAACTTGGATTGATAAACTATGGTGCGAGTGGTTAGGAGACGAGGGTCCTTCAGATGAGGAGAAGGCTACGATCCCGGAGCATGACTTTGCCATTGTCACATTCTCCTACTTCTACAATTTGGGTAGGCTGGGTTTGCTTGATGATCCGGGCCGTCTTCTCACATCTAGTCAGTCAGAATCAGGGAATGGTGAGGACAGTGGCAGGAAGAGAAAGAAGTCTTTCTCGGATCCAGAGGACACCAGTGAATCTCTGTGTAATCAGTATGACTCTTCTGAGGAGGTTTCTTCAGGTCATAATTCAAACTCGTCAAGAGATCTAATAGCTGATTATGATGATAGTCTCATGAGCAAAAGAGTCGTGAAGAACAGAACGGTAAGACGGGAGCTGAGGAGGCAACAACGAATATTTTCTGAAAGAATATGCGAAGTCTGTAAACAAAAGATGCTTCCAGGGAAAGATGCGGCAGCAATACTAAACATGAAGACGGGAAATCTTGCTTGTGGCAGCAGAAACCTCCTGGGGGCGTTTCATCTATTTCATGTGTCGTGTGTCGTACACTGGTTTCTCTTCTGTGAGAGTGAAATACTTGGGAACAAGATGGTGAGTGGAAAAGGAAAAAAGAGATGCACAAAGCATAGTGGTCAGACTGGTGTAAAGTGGAATGAGTTGGCAAACGATGTGAGCTGGCAAATATTTTCGGTGTTCTGTCCAGAATGCCAAGGCACTGGCATAAATATCGAAGGAGCTGTGATTGAGAGAGACACGTTTCCACTTTCTCAGACATGGAGGTTCCAGGTGAAAGTGAGTGAAGGTAGAAAAGCATGGGTTAAAAATCCGGAGAGATTGAAGAATTGCTCAACCGGATTTCATTTTCCGCAGCAGGCTGAGGAGACGGAACAGATTCCGGTTCAGGAGGAGAGAGTGCAGATGATGAAACTGGTTCGCTTCTACCGAGTGGAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

516

Amino Acids

58.23

Weight (kDa)

5.94

Isoelectric Point (pI)

48.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 332
AccIII TCCGGA 1 cut(s) 1420
AciI CCGC 2 cut(s) 1046, 1460
AclI AACGTT 1 cut(s) 130
AclWI GGATC 5 cut(s) 245, 649, 722, 806, 819
AcoI YGGCCR 1 cut(s) 544
AcuI CTGAAG 3 cut(s) 95, 618, 855
AdeI CACNNNGTG 1 cut(s) 153
AfaI GTAC 2 cut(s) 282, 1140
AfiI CCNNNNNNNGG 3 cut(s) 214, 332, 1105
AflIII ACRYGT 1 cut(s) 1347
AgsI TTSAA 7 cut(s) 49, 199, 300, 524, 569, 885, 1432
AjnI CCWGG 4 cut(s) 557, 1033, 1101, 1377
AjuI GAANNNNNNNTTGG 2 cut(s) 244, 276
AluBI AGCT 6 cut(s) 112, 554, 908, 970, 1269, 1331
AluI AGCT 6 cut(s) 112, 554, 908, 970, 1269, 1331
Alw26I GTCTC 4 cut(s) 615, 929, 1338, 1469
AlwI GGATC 5 cut(s) 245, 649, 722, 806, 819
AlwNI CAGNNNCTG 2 cut(s) 332, 446
Aor13HI TCCGGA 1 cut(s) 1420
AoxI GGCC 3 cut(s) 263, 544, 733
ApeKI GCWGC 6 cut(s) 437, 467, 554, 1049, 1089, 1462
AseI ATTAAT 1 cut(s) 42
Asp700I GAANNNNTTC 4 cut(s) 345, 803, 991, 1485
AspS9I GGNCC 2 cut(s) 629, 733
AsuC2I CCSGG 2 cut(s) 659, 732
AsuHPI GGTGA 4 cut(s) 350, 785, 1198, 1393
AvaII GGWCC 1 cut(s) 629
BaeGI GKGCMC 1 cut(s) 195
BamHI GGATCC 1 cut(s) 811
BbsI GAAGAC 2 cut(s) 731, 1073
BbvCI CCTCAGC 2 cut(s) 971, 1470
BbvI GCAGC 6 cut(s) 424, 454, 541, 1061, 1101, 1474
BccI CCATC 3 cut(s) 116, 269, 1177
BceAI ACGGC 1 cut(s) 720
BcgI CGANNNNNNTGC 4 cut(s) 922, 956, 1303, 1337
BciT130I CCWGG 4 cut(s) 559, 1035, 1103, 1379
BclI TGATCA 1 cut(s) 498
BcnI CCSGG 2 cut(s) 659, 732
BcoDI GTCTC 4 cut(s) 615, 929, 1338, 1469
BfaI CTAG 4 cut(s) 36, 234, 459, 750
BfmI CTRYAG 3 cut(s) 169, 438, 468
BglII AGATCT 1 cut(s) 898
BisI GCNGC 7 cut(s) 438, 468, 555, 1047, 1050, 1090, 1463
BlsI GCNGC 7 cut(s) 439, 469, 556, 1048, 1051, 1091, 1464
Bme1390I CCNGG 6 cut(s) 559, 659, 732, 1035, 1103, 1379
Bme18I GGWCC 1 cut(s) 629
BmgT120I GGNCC 2 cut(s) 629, 733
BmiI GGNNCC 4 cut(s) 348, 630, 813, 1376
BmrFI CCNGG 6 cut(s) 559, 659, 732, 1035, 1103, 1379
BmsI GCATC 3 cut(s) 1017, 1033, 1199
BoxI GACNNNNGTC 1 cut(s) 627
BpiI GAAGAC 2 cut(s) 731, 1073
BpmI CTGGAG 2 cut(s) 309, 324
Bpu10I CCTNAGC 2 cut(s) 971, 1470
BpuMI CCSGG 2 cut(s) 659, 732
BsaAI YACGTR 1 cut(s) 116
BsaJI CCNNGG 4 cut(s) 260, 1034, 1102, 1303
BsaWI WCCGGW 3 cut(s) 1420, 1445, 1489
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 332, 1105
Bse1I ACTGG 7 cut(s) 307, 326, 825, 1148, 1237, 1315, 1527
BseAI TCCGGA 1 cut(s) 1420
BseBI CCWGG 4 cut(s) 559, 1035, 1103, 1379
BseDI CCNNGG 4 cut(s) 260, 1034, 1102, 1303
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 3 cut(s) 214, 332, 1105
BseMII CTCAG 5 cut(s) 74, 849, 962, 1376, 1461
BseNI ACTGG 7 cut(s) 307, 326, 825, 1148, 1237, 1315, 1527
BseRI GAGGAG 5 cut(s) 656, 875, 988, 1487, 1514
BseSI GKGCMC 1 cut(s) 195
BseXI GCAGC 6 cut(s) 424, 454, 541, 1061, 1101, 1474
BseYI CCCAGC 1 cut(s) 712
BsgI GTGCAG 2 cut(s) 130, 1529
BshFI GGCC 3 cut(s) 265, 546, 735
BsiSI CCGG 5 cut(s) 659, 731, 1421, 1446, 1490
BslI CCNNNNNNNGG 3 cut(s) 214, 332, 1105
BsmAI GTCTC 4 cut(s) 615, 929, 1338, 1469
BsmBI CGTCTC 2 cut(s) 615, 1469
BsmI GAATGC 1 cut(s) 1304
BsnI GGCC 3 cut(s) 265, 546, 735
Bsp1286I GDGCHC 1 cut(s) 195
Bsp13I TCCGGA 1 cut(s) 1420
Bsp143I GATC 7 cut(s) 237, 475, 498, 654, 727, 811, 898
BspACI CCGC 2 cut(s) 1046, 1460
BspANI GGCC 3 cut(s) 265, 546, 735
BspCNI CTCAG 5 cut(s) 75, 850, 963, 1375, 1462
BspEI TCCGGA 1 cut(s) 1420
BspHI TCATGA 1 cut(s) 927
BspLI GGNNCC 4 cut(s) 348, 630, 813, 1376
BspMAI CTGCAG 2 cut(s) 442, 472
BspPI GGATC 5 cut(s) 245, 649, 722, 806, 819
BsrI ACTGG 7 cut(s) 307, 326, 825, 1148, 1237, 1315, 1527
BssECI CCNNGG 4 cut(s) 260, 1034, 1102, 1303
BssMI GATC 7 cut(s) 237, 475, 498, 654, 727, 811, 898
BssT1I CCWWGG 2 cut(s) 260, 1303
Bst2UI CCWGG 4 cut(s) 559, 1035, 1103, 1379
Bst4CI ACNGT 2 cut(s) 782, 958
Bst6I CTCTTC 4 cut(s) 309, 785, 859, 1157
BstBAI YACGTR 1 cut(s) 116
BstC8I GCNNGC 3 cut(s) 435, 1271, 1467
BstDEI CTNAG 6 cut(s) 6, 83, 858, 971, 1362, 1470
BstEII GGTNACC 1 cut(s) 24
BstENI CCTNNNNNAGG 1 cut(s) 212
BstF5I GGATG 1 cut(s) 127
BstKTI GATC 7 cut(s) 240, 478, 501, 657, 730, 814, 901
BstMAI GTCTC 4 cut(s) 615, 929, 1338, 1469
BstMBI GATC 7 cut(s) 237, 475, 498, 654, 727, 811, 898
BstMWI GCNNNNNNNGC 2 cut(s) 718, 976
BstNI CCWGG 4 cut(s) 559, 1035, 1103, 1379
BstNSI RCATGY 1 cut(s) 231
BstPAI GACNNNNGTC 1 cut(s) 627
BstPI GGTNACC 1 cut(s) 24
BstSCI CCNGG 6 cut(s) 557, 657, 730, 1033, 1101, 1377
BstSFI CTRYAG 3 cut(s) 169, 438, 468
BstSLI GKGCMC 1 cut(s) 195
BstV1I GCAGC 6 cut(s) 424, 454, 541, 1061, 1101, 1474
BstV2I GAAGAC 2 cut(s) 731, 1073
BstX2I RGATCY 2 cut(s) 811, 898
BstXI CCANNNNNNTGG 1 cut(s) 1310
BstYI RGATCY 2 cut(s) 811, 898
BsuRI GGCC 3 cut(s) 265, 546, 735
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 5 cut(s) 277, 787, 832, 1141, 1308
Cac8I GCNNGC 3 cut(s) 435, 1271, 1467
CaiI CAGNNNCTG 2 cut(s) 332, 446
CciI TCATGA 1 cut(s) 927
Cfr13I GGNCC 2 cut(s) 629, 733
CseI GACGC 1 cut(s) 588
Csp6I GTAC 2 cut(s) 281, 1139
CviAII CATG 7 cut(s) 228, 665, 928, 1063, 1124, 1368, 1407
CviQI GTAC 2 cut(s) 281, 1139
DdeI CTNAG 6 cut(s) 6, 83, 858, 971, 1362, 1470
DpnI GATC 7 cut(s) 239, 477, 500, 656, 729, 813, 900
DpnII GATC 7 cut(s) 237, 475, 498, 654, 727, 811, 898
DraIII CACNNNGTG 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 544
Eam1104I CTCTTC 4 cut(s) 309, 785, 859, 1157
EarI CTCTTC 4 cut(s) 309, 785, 859, 1157
Eco130I CCWWGG 2 cut(s) 260, 1303
Eco47I GGWCC 1 cut(s) 629
Eco57I CTGAAG 3 cut(s) 95, 618, 855
Eco91I GGTNACC 1 cut(s) 24
EcoNI CCTNNNNNAGG 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 629
EcoO65I GGTNACC 1 cut(s) 24
EcoRII CCWGG 4 cut(s) 557, 1033, 1101, 1377
EcoT14I CCWWGG 2 cut(s) 260, 1303
ErhI CCWWGG 2 cut(s) 260, 1303
Esp3I CGTCTC 2 cut(s) 615, 1469
FaeI CATG 7 cut(s) 231, 668, 931, 1066, 1127, 1371, 1410
FatI CATG 7 cut(s) 227, 664, 927, 1062, 1123, 1367, 1406
FbaI TGATCA 1 cut(s) 498
Fnu4HI GCNGC 7 cut(s) 438, 468, 555, 1047, 1050, 1090, 1463
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 7 cut(s) 438, 468, 555, 1047, 1050, 1090, 1463
FspBI CTAG 4 cut(s) 36, 234, 459, 750
GluI GCNGC 7 cut(s) 438, 468, 555, 1047, 1050, 1090, 1463
GsaI CCCAGC 1 cut(s) 716
GsuI CTGGAG 2 cut(s) 309, 324
HaeIII GGCC 3 cut(s) 265, 546, 735
HapII CCGG 5 cut(s) 659, 731, 1421, 1446, 1490
HgaI GACGC 1 cut(s) 588
Hin1II CATG 7 cut(s) 231, 668, 931, 1066, 1127, 1371, 1410
HinfI GANTC 7 cut(s) 79, 256, 761, 830, 851, 939, 1486
HpaII CCGG 5 cut(s) 659, 731, 1421, 1446, 1490
HphI GGTGA 4 cut(s) 350, 785, 1198, 1393
Hpy166II GTNNAC 3 cut(s) 281, 1019, 1141
Hpy188I TCNGA 9 cut(s) 75, 84, 637, 760, 811, 859, 997, 1230, 1365
Hpy188III TCNNGA 9 cut(s) 350, 515, 815, 894, 928, 943, 1295, 1421, 1496
Hpy8I GTNNAC 3 cut(s) 281, 1019, 1141
HpyAV CCTTC 6 cut(s) 218, 335, 640, 642, 1319, 1388
HpyCH4III ACNGT 2 cut(s) 782, 958
HpyCH4IV ACGT 4 cut(s) 115, 130, 356, 1349
HpyCH4V TGCA 5 cut(s) 147, 440, 470, 1212, 1510
HpyF10VI GCNNNNNNNGC 2 cut(s) 718, 976
HpyF3I CTNAG 6 cut(s) 6, 83, 858, 971, 1362, 1470
HpySE526I ACGT 4 cut(s) 115, 130, 356, 1349
Hsp92II CATG 7 cut(s) 231, 668, 931, 1066, 1127, 1371, 1410
Kpn2I TCCGGA 1 cut(s) 1420
Ksp22I TGATCA 1 cut(s) 498
Kzo9I GATC 7 cut(s) 237, 475, 498, 654, 727, 811, 898
LmnI GCTCC 5 cut(s) 166, 361, 661, 967, 1328
Lsp1109I GCAGC 6 cut(s) 424, 454, 541, 1061, 1101, 1474
LweI GCATC 3 cut(s) 1017, 1033, 1199
MaeI CTAG 4 cut(s) 36, 234, 459, 750
MaeII ACGT 4 cut(s) 115, 130, 356, 1349
MaeIII GTNAC 5 cut(s) 24, 87, 442, 461, 679
MalI GATC 7 cut(s) 239, 477, 500, 656, 729, 813, 900
MboI GATC 7 cut(s) 237, 475, 498, 654, 727, 811, 898
MflI RGATCY 2 cut(s) 811, 898
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 7 cut(s) 17, 43, 56, 483, 700, 880, 1435
MlyI GAGTC 2 cut(s) 845, 948
MmeI TCCRAC 1 cut(s) 339
MroI TCCGGA 1 cut(s) 1420
MroXI GAANNNNTTC 4 cut(s) 345, 803, 991, 1485
MseI TTAA 2 cut(s) 42, 1413
MslI CAYNNNNRTG 2 cut(s) 198, 369
MspI CCGG 5 cut(s) 659, 731, 1421, 1446, 1490
MspR9I CCNGG 6 cut(s) 559, 659, 732, 1035, 1103, 1379
Mva1269I GAATGC 1 cut(s) 1304
MvaI CCWGG 4 cut(s) 559, 1035, 1103, 1379
MwoI GCNNNNNNNGC 2 cut(s) 718, 976
NciI CCSGG 2 cut(s) 659, 732
NdeII GATC 7 cut(s) 237, 475, 498, 654, 727, 811, 898
NlaIII CATG 7 cut(s) 231, 668, 931, 1066, 1127, 1371, 1410
NlaIV GGNNCC 4 cut(s) 348, 630, 813, 1376
NmuCI GTSAC 2 cut(s) 461, 679
NspI RCATGY 1 cut(s) 231
PagI TCATGA 1 cut(s) 927
PcsI WCGNNNNNNNCGW 1 cut(s) 1534
PctI GAATGC 1 cut(s) 1304
PdmI GAANNNNTTC 4 cut(s) 345, 803, 991, 1485
PfeI GAWTC 5 cut(s) 79, 256, 761, 830, 1486
PflMI CCANNNNNTGG 1 cut(s) 332
PfoI TCCNGGA 1 cut(s) 657
PkrI GCNGC 7 cut(s) 439, 469, 556, 1048, 1051, 1091, 1464
PleI GAGTC 2 cut(s) 845, 947
PpsI GAGTC 2 cut(s) 845, 947
Ppu21I YACGTR 1 cut(s) 116
PpuMI RGGWCCY 1 cut(s) 629
PshAI GACNNNNGTC 1 cut(s) 627
PshBI ATTAAT 1 cut(s) 42
Psp1406I AACGTT 1 cut(s) 130
Psp5II RGGWCCY 1 cut(s) 629
Psp6I CCWGG 4 cut(s) 557, 1033, 1101, 1377
PspEI GGTNACC 1 cut(s) 24
PspFI CCCAGC 1 cut(s) 712
PspGI CCWGG 4 cut(s) 557, 1033, 1101, 1377
PspN4I GGNNCC 4 cut(s) 348, 630, 813, 1376
PspPI GGNCC 2 cut(s) 629, 733
PspPPI RGGWCCY 1 cut(s) 629
PstI CTGCAG 2 cut(s) 442, 472
PstNI CAGNNNCTG 2 cut(s) 332, 446
PsuI RGATCY 2 cut(s) 811, 898
RsaI GTAC 2 cut(s) 282, 1140
RsaNI GTAC 2 cut(s) 281, 1139
RseI CAYNNNNRTG 2 cut(s) 198, 369
SaqAI TTAA 2 cut(s) 42, 1413
SatI GCNGC 7 cut(s) 438, 468, 555, 1047, 1050, 1090, 1463
Sau3AI GATC 7 cut(s) 237, 475, 498, 654, 727, 811, 898
Sau96I GGNCC 2 cut(s) 629, 733
SchI GAGTC 2 cut(s) 845, 948
ScrFI CCNGG 6 cut(s) 559, 659, 732, 1035, 1103, 1379
SduI GDGCHC 1 cut(s) 195
SfaNI GCATC 3 cut(s) 1017, 1033, 1199
SfcI CTRYAG 3 cut(s) 169, 438, 468
SinI GGWCC 1 cut(s) 629
SmiMI CAYNNNNRTG 2 cut(s) 198, 369
Sse9I AATT 7 cut(s) 17, 43, 56, 483, 700, 880, 1435
SsiI CCGC 2 cut(s) 1046, 1460
SspI AATATT 2 cut(s) 990, 1278
SspMI CTAG 4 cut(s) 36, 234, 459, 750
StyD4I CCNGG 6 cut(s) 557, 657, 730, 1033, 1101, 1377
StyI CCWWGG 2 cut(s) 260, 1303
TaaI ACNGT 2 cut(s) 782, 958
TaiI ACGT 4 cut(s) 118, 133, 359, 1352
TaqI TCGA 1 cut(s) 1323
TasI AATT 7 cut(s) 17, 43, 56, 483, 700, 880, 1435
TatI WGTACW 1 cut(s) 280
TauI GCSGC 1 cut(s) 1049
TfiI GAWTC 5 cut(s) 79, 256, 761, 830, 1486
Tru1I TTAA 2 cut(s) 42, 1413
Tru9I TTAA 2 cut(s) 42, 1413
TscAI CASTG 5 cut(s) 277, 787, 832, 1148, 1315
TseFI GTSAC 2 cut(s) 461, 679
TseI GCWGC 6 cut(s) 437, 467, 554, 1049, 1089, 1462
Tsp45I GTSAC 2 cut(s) 461, 679
TspDTI ATGAA 8 cut(s) 393, 468, 523, 1079, 1103, 1112, 1442, 1532
TspGWI ACGGA 1 cut(s) 1493
TspRI CASTG 5 cut(s) 277, 787, 832, 1148, 1315
Van91I CCANNNNNTGG 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 629
VspI ATTAAT 1 cut(s) 42
XagI CCTNNNNNAGG 1 cut(s) 212
XceI RCATGY 1 cut(s) 231
XmnI GAANNNNTTC 4 cut(s) 345, 803, 991, 1485
XspI CTAG 4 cut(s) 36, 234, 459, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.