Zinc-finger of C2H2 type
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G28260 AT4G28260 |
| fragaria_vesca | FvH4_6g26160 FvH4_6g26160 FvH4_6g26160 FvH4_6g26160 |
| malus_domestica | MD09G1249000.v1.1 MD17G1241500.v1.1 |
| prunus_persica | Prupe.3G136400_v2.0.a1 Prupe.3G136400_v2.0.a1 |
| pyrus_communis | pycom03g02040 pycom09g16590 |
| rosa_chinensis | RchiOBHm_Chr2g0126141 |
| rosa_laevigata | RLG00000018889 |
| rosa_multiflora | Rmu_sc0001052.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00117400 |
| rosa_rugosa | Rorug02G0261600 |
| rosa_samantha | Rh2AG318500 Rh2BG326800 Rh2DG345000 Rh2DG346200 |
| rosa_wichuraiana | Rw2G025800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 332 |
| AccIII | TCCGGA | 1 cut(s) | 1420 |
| AciI | CCGC | 2 cut(s) | 1046, 1460 |
| AclI | AACGTT | 1 cut(s) | 130 |
| AclWI | GGATC | 5 cut(s) | 245, 649, 722, 806, 819 |
| AcoI | YGGCCR | 1 cut(s) | 544 |
| AcuI | CTGAAG | 3 cut(s) | 95, 618, 855 |
| AdeI | CACNNNGTG | 1 cut(s) | 153 |
| AfaI | GTAC | 2 cut(s) | 282, 1140 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 214, 332, 1105 |
| AflIII | ACRYGT | 1 cut(s) | 1347 |
| AgsI | TTSAA | 7 cut(s) | 49, 199, 300, 524, 569, 885, 1432 |
| AjnI | CCWGG | 4 cut(s) | 557, 1033, 1101, 1377 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 244, 276 |
| AluBI | AGCT | 6 cut(s) | 112, 554, 908, 970, 1269, 1331 |
| AluI | AGCT | 6 cut(s) | 112, 554, 908, 970, 1269, 1331 |
| Alw26I | GTCTC | 4 cut(s) | 615, 929, 1338, 1469 |
| AlwI | GGATC | 5 cut(s) | 245, 649, 722, 806, 819 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 332, 446 |
| Aor13HI | TCCGGA | 1 cut(s) | 1420 |
| AoxI | GGCC | 3 cut(s) | 263, 544, 733 |
| ApeKI | GCWGC | 6 cut(s) | 437, 467, 554, 1049, 1089, 1462 |
| AseI | ATTAAT | 1 cut(s) | 42 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 345, 803, 991, 1485 |
| AspS9I | GGNCC | 2 cut(s) | 629, 733 |
| AsuC2I | CCSGG | 2 cut(s) | 659, 732 |
| AsuHPI | GGTGA | 4 cut(s) | 350, 785, 1198, 1393 |
| AvaII | GGWCC | 1 cut(s) | 629 |
| BaeGI | GKGCMC | 1 cut(s) | 195 |
| BamHI | GGATCC | 1 cut(s) | 811 |
| BbsI | GAAGAC | 2 cut(s) | 731, 1073 |
| BbvCI | CCTCAGC | 2 cut(s) | 971, 1470 |
| BbvI | GCAGC | 6 cut(s) | 424, 454, 541, 1061, 1101, 1474 |
| BccI | CCATC | 3 cut(s) | 116, 269, 1177 |
| BceAI | ACGGC | 1 cut(s) | 720 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 922, 956, 1303, 1337 |
| BciT130I | CCWGG | 4 cut(s) | 559, 1035, 1103, 1379 |
| BclI | TGATCA | 1 cut(s) | 498 |
| BcnI | CCSGG | 2 cut(s) | 659, 732 |
| BcoDI | GTCTC | 4 cut(s) | 615, 929, 1338, 1469 |
| BfaI | CTAG | 4 cut(s) | 36, 234, 459, 750 |
| BfmI | CTRYAG | 3 cut(s) | 169, 438, 468 |
| BglII | AGATCT | 1 cut(s) | 898 |
| BisI | GCNGC | 7 cut(s) | 438, 468, 555, 1047, 1050, 1090, 1463 |
| BlsI | GCNGC | 7 cut(s) | 439, 469, 556, 1048, 1051, 1091, 1464 |
| Bme1390I | CCNGG | 6 cut(s) | 559, 659, 732, 1035, 1103, 1379 |
| Bme18I | GGWCC | 1 cut(s) | 629 |
| BmgT120I | GGNCC | 2 cut(s) | 629, 733 |
| BmiI | GGNNCC | 4 cut(s) | 348, 630, 813, 1376 |
| BmrFI | CCNGG | 6 cut(s) | 559, 659, 732, 1035, 1103, 1379 |
| BmsI | GCATC | 3 cut(s) | 1017, 1033, 1199 |
| BoxI | GACNNNNGTC | 1 cut(s) | 627 |
| BpiI | GAAGAC | 2 cut(s) | 731, 1073 |
| BpmI | CTGGAG | 2 cut(s) | 309, 324 |
| Bpu10I | CCTNAGC | 2 cut(s) | 971, 1470 |
| BpuMI | CCSGG | 2 cut(s) | 659, 732 |
| BsaAI | YACGTR | 1 cut(s) | 116 |
| BsaJI | CCNNGG | 4 cut(s) | 260, 1034, 1102, 1303 |
| BsaWI | WCCGGW | 3 cut(s) | 1420, 1445, 1489 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 414, 444 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 214, 332, 1105 |
| Bse1I | ACTGG | 7 cut(s) | 307, 326, 825, 1148, 1237, 1315, 1527 |
| BseAI | TCCGGA | 1 cut(s) | 1420 |
| BseBI | CCWGG | 4 cut(s) | 559, 1035, 1103, 1379 |
| BseDI | CCNNGG | 4 cut(s) | 260, 1034, 1102, 1303 |
| BseGI | GGATG | 1 cut(s) | 127 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 214, 332, 1105 |
| BseMII | CTCAG | 5 cut(s) | 74, 849, 962, 1376, 1461 |
| BseNI | ACTGG | 7 cut(s) | 307, 326, 825, 1148, 1237, 1315, 1527 |
| BseRI | GAGGAG | 5 cut(s) | 656, 875, 988, 1487, 1514 |
| BseSI | GKGCMC | 1 cut(s) | 195 |
| BseXI | GCAGC | 6 cut(s) | 424, 454, 541, 1061, 1101, 1474 |
| BseYI | CCCAGC | 1 cut(s) | 712 |
| BsgI | GTGCAG | 2 cut(s) | 130, 1529 |
| BshFI | GGCC | 3 cut(s) | 265, 546, 735 |
| BsiSI | CCGG | 5 cut(s) | 659, 731, 1421, 1446, 1490 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 214, 332, 1105 |
| BsmAI | GTCTC | 4 cut(s) | 615, 929, 1338, 1469 |
| BsmBI | CGTCTC | 2 cut(s) | 615, 1469 |
| BsmI | GAATGC | 1 cut(s) | 1304 |
| BsnI | GGCC | 3 cut(s) | 265, 546, 735 |
| Bsp1286I | GDGCHC | 1 cut(s) | 195 |
| Bsp13I | TCCGGA | 1 cut(s) | 1420 |
| Bsp143I | GATC | 7 cut(s) | 237, 475, 498, 654, 727, 811, 898 |
| BspACI | CCGC | 2 cut(s) | 1046, 1460 |
| BspANI | GGCC | 3 cut(s) | 265, 546, 735 |
| BspCNI | CTCAG | 5 cut(s) | 75, 850, 963, 1375, 1462 |
| BspEI | TCCGGA | 1 cut(s) | 1420 |
| BspHI | TCATGA | 1 cut(s) | 927 |
| BspLI | GGNNCC | 4 cut(s) | 348, 630, 813, 1376 |
| BspMAI | CTGCAG | 2 cut(s) | 442, 472 |
| BspPI | GGATC | 5 cut(s) | 245, 649, 722, 806, 819 |
| BsrI | ACTGG | 7 cut(s) | 307, 326, 825, 1148, 1237, 1315, 1527 |
| BssECI | CCNNGG | 4 cut(s) | 260, 1034, 1102, 1303 |
| BssMI | GATC | 7 cut(s) | 237, 475, 498, 654, 727, 811, 898 |
| BssT1I | CCWWGG | 2 cut(s) | 260, 1303 |
| Bst2UI | CCWGG | 4 cut(s) | 559, 1035, 1103, 1379 |
| Bst4CI | ACNGT | 2 cut(s) | 782, 958 |
| Bst6I | CTCTTC | 4 cut(s) | 309, 785, 859, 1157 |
| BstBAI | YACGTR | 1 cut(s) | 116 |
| BstC8I | GCNNGC | 3 cut(s) | 435, 1271, 1467 |
| BstDEI | CTNAG | 6 cut(s) | 6, 83, 858, 971, 1362, 1470 |
| BstEII | GGTNACC | 1 cut(s) | 24 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 212 |
| BstF5I | GGATG | 1 cut(s) | 127 |
| BstKTI | GATC | 7 cut(s) | 240, 478, 501, 657, 730, 814, 901 |
| BstMAI | GTCTC | 4 cut(s) | 615, 929, 1338, 1469 |
| BstMBI | GATC | 7 cut(s) | 237, 475, 498, 654, 727, 811, 898 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 718, 976 |
| BstNI | CCWGG | 4 cut(s) | 559, 1035, 1103, 1379 |
| BstNSI | RCATGY | 1 cut(s) | 231 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 627 |
| BstPI | GGTNACC | 1 cut(s) | 24 |
| BstSCI | CCNGG | 6 cut(s) | 557, 657, 730, 1033, 1101, 1377 |
| BstSFI | CTRYAG | 3 cut(s) | 169, 438, 468 |
| BstSLI | GKGCMC | 1 cut(s) | 195 |
| BstV1I | GCAGC | 6 cut(s) | 424, 454, 541, 1061, 1101, 1474 |
| BstV2I | GAAGAC | 2 cut(s) | 731, 1073 |
| BstX2I | RGATCY | 2 cut(s) | 811, 898 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1310 |
| BstYI | RGATCY | 2 cut(s) | 811, 898 |
| BsuRI | GGCC | 3 cut(s) | 265, 546, 735 |
| BtsCI | GGATG | 1 cut(s) | 127 |
| BtsIMutI | CAGTG | 5 cut(s) | 277, 787, 832, 1141, 1308 |
| Cac8I | GCNNGC | 3 cut(s) | 435, 1271, 1467 |
| CaiI | CAGNNNCTG | 2 cut(s) | 332, 446 |
| CciI | TCATGA | 1 cut(s) | 927 |
| Cfr13I | GGNCC | 2 cut(s) | 629, 733 |
| CseI | GACGC | 1 cut(s) | 588 |
| Csp6I | GTAC | 2 cut(s) | 281, 1139 |
| CviAII | CATG | 7 cut(s) | 228, 665, 928, 1063, 1124, 1368, 1407 |
| CviQI | GTAC | 2 cut(s) | 281, 1139 |
| DdeI | CTNAG | 6 cut(s) | 6, 83, 858, 971, 1362, 1470 |
| DpnI | GATC | 7 cut(s) | 239, 477, 500, 656, 729, 813, 900 |
| DpnII | GATC | 7 cut(s) | 237, 475, 498, 654, 727, 811, 898 |
| DraIII | CACNNNGTG | 1 cut(s) | 153 |
| EaeI | YGGCCR | 1 cut(s) | 544 |
| Eam1104I | CTCTTC | 4 cut(s) | 309, 785, 859, 1157 |
| EarI | CTCTTC | 4 cut(s) | 309, 785, 859, 1157 |
| Eco130I | CCWWGG | 2 cut(s) | 260, 1303 |
| Eco47I | GGWCC | 1 cut(s) | 629 |
| Eco57I | CTGAAG | 3 cut(s) | 95, 618, 855 |
| Eco91I | GGTNACC | 1 cut(s) | 24 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 212 |
| EcoO109I | RGGNCCY | 1 cut(s) | 629 |
| EcoO65I | GGTNACC | 1 cut(s) | 24 |
| EcoRII | CCWGG | 4 cut(s) | 557, 1033, 1101, 1377 |
| EcoT14I | CCWWGG | 2 cut(s) | 260, 1303 |
| ErhI | CCWWGG | 2 cut(s) | 260, 1303 |
| Esp3I | CGTCTC | 2 cut(s) | 615, 1469 |
| FaeI | CATG | 7 cut(s) | 231, 668, 931, 1066, 1127, 1371, 1410 |
| FatI | CATG | 7 cut(s) | 227, 664, 927, 1062, 1123, 1367, 1406 |
| FbaI | TGATCA | 1 cut(s) | 498 |
| Fnu4HI | GCNGC | 7 cut(s) | 438, 468, 555, 1047, 1050, 1090, 1463 |
| FokI | GGATG | 1 cut(s) | 134 |
| Fsp4HI | GCNGC | 7 cut(s) | 438, 468, 555, 1047, 1050, 1090, 1463 |
| FspBI | CTAG | 4 cut(s) | 36, 234, 459, 750 |
| GluI | GCNGC | 7 cut(s) | 438, 468, 555, 1047, 1050, 1090, 1463 |
| GsaI | CCCAGC | 1 cut(s) | 716 |
| GsuI | CTGGAG | 2 cut(s) | 309, 324 |
| HaeIII | GGCC | 3 cut(s) | 265, 546, 735 |
| HapII | CCGG | 5 cut(s) | 659, 731, 1421, 1446, 1490 |
| HgaI | GACGC | 1 cut(s) | 588 |
| Hin1II | CATG | 7 cut(s) | 231, 668, 931, 1066, 1127, 1371, 1410 |
| HinfI | GANTC | 7 cut(s) | 79, 256, 761, 830, 851, 939, 1486 |
| HpaII | CCGG | 5 cut(s) | 659, 731, 1421, 1446, 1490 |
| HphI | GGTGA | 4 cut(s) | 350, 785, 1198, 1393 |
| Hpy166II | GTNNAC | 3 cut(s) | 281, 1019, 1141 |
| Hpy188I | TCNGA | 9 cut(s) | 75, 84, 637, 760, 811, 859, 997, 1230, 1365 |
| Hpy188III | TCNNGA | 9 cut(s) | 350, 515, 815, 894, 928, 943, 1295, 1421, 1496 |
| Hpy8I | GTNNAC | 3 cut(s) | 281, 1019, 1141 |
| HpyAV | CCTTC | 6 cut(s) | 218, 335, 640, 642, 1319, 1388 |
| HpyCH4III | ACNGT | 2 cut(s) | 782, 958 |
| HpyCH4IV | ACGT | 4 cut(s) | 115, 130, 356, 1349 |
| HpyCH4V | TGCA | 5 cut(s) | 147, 440, 470, 1212, 1510 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 718, 976 |
| HpyF3I | CTNAG | 6 cut(s) | 6, 83, 858, 971, 1362, 1470 |
| HpySE526I | ACGT | 4 cut(s) | 115, 130, 356, 1349 |
| Hsp92II | CATG | 7 cut(s) | 231, 668, 931, 1066, 1127, 1371, 1410 |
| Kpn2I | TCCGGA | 1 cut(s) | 1420 |
| Ksp22I | TGATCA | 1 cut(s) | 498 |
| Kzo9I | GATC | 7 cut(s) | 237, 475, 498, 654, 727, 811, 898 |
| LmnI | GCTCC | 5 cut(s) | 166, 361, 661, 967, 1328 |
| Lsp1109I | GCAGC | 6 cut(s) | 424, 454, 541, 1061, 1101, 1474 |
| LweI | GCATC | 3 cut(s) | 1017, 1033, 1199 |
| MaeI | CTAG | 4 cut(s) | 36, 234, 459, 750 |
| MaeII | ACGT | 4 cut(s) | 115, 130, 356, 1349 |
| MaeIII | GTNAC | 5 cut(s) | 24, 87, 442, 461, 679 |
| MalI | GATC | 7 cut(s) | 239, 477, 500, 656, 729, 813, 900 |
| MboI | GATC | 7 cut(s) | 237, 475, 498, 654, 727, 811, 898 |
| MflI | RGATCY | 2 cut(s) | 811, 898 |
| MhlI | GDGCHC | 1 cut(s) | 195 |
| MluCI | AATT | 7 cut(s) | 17, 43, 56, 483, 700, 880, 1435 |
| MlyI | GAGTC | 2 cut(s) | 845, 948 |
| MmeI | TCCRAC | 1 cut(s) | 339 |
| MroI | TCCGGA | 1 cut(s) | 1420 |
| MroXI | GAANNNNTTC | 4 cut(s) | 345, 803, 991, 1485 |
| MseI | TTAA | 2 cut(s) | 42, 1413 |
| MslI | CAYNNNNRTG | 2 cut(s) | 198, 369 |
| MspI | CCGG | 5 cut(s) | 659, 731, 1421, 1446, 1490 |
| MspR9I | CCNGG | 6 cut(s) | 559, 659, 732, 1035, 1103, 1379 |
| Mva1269I | GAATGC | 1 cut(s) | 1304 |
| MvaI | CCWGG | 4 cut(s) | 559, 1035, 1103, 1379 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 718, 976 |
| NciI | CCSGG | 2 cut(s) | 659, 732 |
| NdeII | GATC | 7 cut(s) | 237, 475, 498, 654, 727, 811, 898 |
| NlaIII | CATG | 7 cut(s) | 231, 668, 931, 1066, 1127, 1371, 1410 |
| NlaIV | GGNNCC | 4 cut(s) | 348, 630, 813, 1376 |
| NmuCI | GTSAC | 2 cut(s) | 461, 679 |
| NspI | RCATGY | 1 cut(s) | 231 |
| PagI | TCATGA | 1 cut(s) | 927 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1534 |
| PctI | GAATGC | 1 cut(s) | 1304 |
| PdmI | GAANNNNTTC | 4 cut(s) | 345, 803, 991, 1485 |
| PfeI | GAWTC | 5 cut(s) | 79, 256, 761, 830, 1486 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 332 |
| PfoI | TCCNGGA | 1 cut(s) | 657 |
| PkrI | GCNGC | 7 cut(s) | 439, 469, 556, 1048, 1051, 1091, 1464 |
| PleI | GAGTC | 2 cut(s) | 845, 947 |
| PpsI | GAGTC | 2 cut(s) | 845, 947 |
| Ppu21I | YACGTR | 1 cut(s) | 116 |
| PpuMI | RGGWCCY | 1 cut(s) | 629 |
| PshAI | GACNNNNGTC | 1 cut(s) | 627 |
| PshBI | ATTAAT | 1 cut(s) | 42 |
| Psp1406I | AACGTT | 1 cut(s) | 130 |
| Psp5II | RGGWCCY | 1 cut(s) | 629 |
| Psp6I | CCWGG | 4 cut(s) | 557, 1033, 1101, 1377 |
| PspEI | GGTNACC | 1 cut(s) | 24 |
| PspFI | CCCAGC | 1 cut(s) | 712 |
| PspGI | CCWGG | 4 cut(s) | 557, 1033, 1101, 1377 |
| PspN4I | GGNNCC | 4 cut(s) | 348, 630, 813, 1376 |
| PspPI | GGNCC | 2 cut(s) | 629, 733 |
| PspPPI | RGGWCCY | 1 cut(s) | 629 |
| PstI | CTGCAG | 2 cut(s) | 442, 472 |
| PstNI | CAGNNNCTG | 2 cut(s) | 332, 446 |
| PsuI | RGATCY | 2 cut(s) | 811, 898 |
| RsaI | GTAC | 2 cut(s) | 282, 1140 |
| RsaNI | GTAC | 2 cut(s) | 281, 1139 |
| RseI | CAYNNNNRTG | 2 cut(s) | 198, 369 |
| SaqAI | TTAA | 2 cut(s) | 42, 1413 |
| SatI | GCNGC | 7 cut(s) | 438, 468, 555, 1047, 1050, 1090, 1463 |
| Sau3AI | GATC | 7 cut(s) | 237, 475, 498, 654, 727, 811, 898 |
| Sau96I | GGNCC | 2 cut(s) | 629, 733 |
| SchI | GAGTC | 2 cut(s) | 845, 948 |
| ScrFI | CCNGG | 6 cut(s) | 559, 659, 732, 1035, 1103, 1379 |
| SduI | GDGCHC | 1 cut(s) | 195 |
| SfaNI | GCATC | 3 cut(s) | 1017, 1033, 1199 |
| SfcI | CTRYAG | 3 cut(s) | 169, 438, 468 |
| SinI | GGWCC | 1 cut(s) | 629 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 198, 369 |
| Sse9I | AATT | 7 cut(s) | 17, 43, 56, 483, 700, 880, 1435 |
| SsiI | CCGC | 2 cut(s) | 1046, 1460 |
| SspI | AATATT | 2 cut(s) | 990, 1278 |
| SspMI | CTAG | 4 cut(s) | 36, 234, 459, 750 |
| StyD4I | CCNGG | 6 cut(s) | 557, 657, 730, 1033, 1101, 1377 |
| StyI | CCWWGG | 2 cut(s) | 260, 1303 |
| TaaI | ACNGT | 2 cut(s) | 782, 958 |
| TaiI | ACGT | 4 cut(s) | 118, 133, 359, 1352 |
| TaqI | TCGA | 1 cut(s) | 1323 |
| TasI | AATT | 7 cut(s) | 17, 43, 56, 483, 700, 880, 1435 |
| TatI | WGTACW | 1 cut(s) | 280 |
| TauI | GCSGC | 1 cut(s) | 1049 |
| TfiI | GAWTC | 5 cut(s) | 79, 256, 761, 830, 1486 |
| Tru1I | TTAA | 2 cut(s) | 42, 1413 |
| Tru9I | TTAA | 2 cut(s) | 42, 1413 |
| TscAI | CASTG | 5 cut(s) | 277, 787, 832, 1148, 1315 |
| TseFI | GTSAC | 2 cut(s) | 461, 679 |
| TseI | GCWGC | 6 cut(s) | 437, 467, 554, 1049, 1089, 1462 |
| Tsp45I | GTSAC | 2 cut(s) | 461, 679 |
| TspDTI | ATGAA | 8 cut(s) | 393, 468, 523, 1079, 1103, 1112, 1442, 1532 |
| TspGWI | ACGGA | 1 cut(s) | 1493 |
| TspRI | CASTG | 5 cut(s) | 277, 787, 832, 1148, 1315 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 332 |
| VpaK11BI | GGWCC | 1 cut(s) | 629 |
| VspI | ATTAAT | 1 cut(s) | 42 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 212 |
| XceI | RCATGY | 1 cut(s) | 231 |
| XmnI | GAANNNNTTC | 4 cut(s) | 345, 803, 991, 1485 |
| XspI | CTAG | 4 cut(s) | 36, 234, 459, 750 |