Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009338

Physical Location & Seq

Genomic Coordinates Forward (+)

14389080 .. 14392268

Gene Structure 3189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G136400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1608 bp

ATGGCGGGAAGGTGGGAGCTCGGGTTTCCAAAGACTAGTGCTAGTAGTCTTAGGGAGCAAGCAACAAGAACAATTCTTCGCAATGTGAGGTCGCAAGGGCACACATATGTTGAGCTCCGAGAAGATGGGAAAAAGTTCATTTTCTTCTGTACTTTGTGTCTGGCTCCATGTTATAGTGATAAGGTGCTGTTTGATCACTTGAAGGGTAATCTTCACAAGGACAGGTTAGCTGCTGCTAAGGTTACTCTGTTGCGACCAAACCCGTGGCCTTTTAACGATGGTGTGGCTTTCTTTCATAATCCAGATGAGACTGATAAACATTTGGTGATTACAGATGGCAATAAATTTAGGATGTTGGAGTCTCCTGACGATGAAAACAATCTTGCTATTGTCAAGTATGGGGAAAATCTGATATCCAATGGCAATGAGCATGTTGGTACTGATGGTCTTGAATGTAATGGCTCTTTAGATTTTCCGAGGGTTCGTTCAAATTTCAAATTTAGTTGCTCTAATGAGAATTCAACTGCTAATGAAGTAAATTCCTCTGTAGTGATCCCTAGTGTTCTGGTTAGGGATGATGTTACTGACATAGAAGCGAAGAAGGTAGGCTTGGGACAAATTGCTGCAAGGTTCCTTGAGAAGGATAAGGTGTCAAAAGGTATTGGTAGAATATGGTGTGAATGGTTGGGGAAAAAAGCTATTGGCAACGAGTATCATTTAAAGGTTCCTGAGCACGACTTCGCTGTTGTTACCTTCAGTTACAATATTGATTTAGGTAGAAGGGGGTTGCTTGATGATGTAAAGATGCTTCTCTCTTCCAGTCCTTCAGTAGAAACAGAAAATGGTGAAGGCAGCGGCAGTAAGAGAAAGAAGTCCTTTTCTGACCCCGAGGATATCAGTGAATCTCTAAGTAATCAGTATGATTCATGTGGGGAAGATTCCTCTGCATCCAGTGGTGCATCATCAAAGTTGCTTTTAGACCGGTACGACGATCAGCTTCTGCACACAAGATTTATTTTAAACAAGTCTATAAGGAGAGAGTTGAGGCGGCAACAGCGTTTAGCTTTAGGGAGAATGTGTGATATATGTCAACAGAGGATGATTCCTGGGAAAGATGTATCAGCCCTCATAAATTTGAAGACTGGAAGGCTTGCTTGCAGTAGTCGAAATGTGAATGGGGCTTTTCATGTGTTTCATACTTCCTGCCTAATACACTGGATACTTCTGTGTGAGGTTGAGATTGCAAATCAGTCCACTAATTCAAAAGTGAGAAGAAGATCTAGGAGGAAAAATGCAGCCAAGTGCAATGGACAAGATGGTCAGATGACAGCTTTGAGCACGCAAATCCATTCTGTATTCTGCCCAGAGTGCCAGGGTACTGGTGCAATCATTGATGGAGATGACCTGGAGAAACCAAATCTCCCTCTGTCTCAGATGTTCAAGTATAAGATAAAGGTGAGTGATGCACGTAGAGCATGGATGAAGAGTCCTGAAATGTTGGCGAATTGCTCGACAGGTTTTCATTTCCCTTCCCAATACGAAGAAGGAATCCAAGTTTCTGAAAAGGTGAAACCATTAAAGTTGATGCATTTCTACAGGGCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

536

Amino Acids

60.07

Weight (kDa)

8.57

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28260 AT4G28260
fragaria_vesca	FvH4_6g26160 FvH4_6g26160 FvH4_6g26160 FvH4_6g26160
malus_domestica	MD09G1249000.v1.1 MD17G1241500.v1.1
prunus_persica	Prupe.3G136400_v2.0.a1 Prupe.3G136400_v2.0.a1
pyrus_communis	pycom03g02040 pycom09g16590
rosa_chinensis	RchiOBHm_Chr2g0126141
rosa_laevigata	RLG00000018889
rosa_multiflora	Rmu_sc0001052.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117400
rosa_rugosa	Rorug02G0261600
rosa_samantha	Rh2AG318500 Rh2BG326800 Rh2DG345000 Rh2DG346200
rosa_wichuraiana	Rw2G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1317
AciI	CCGC	3 cut(s)	5, 855, 1048
AclWI	GGATC	1 cut(s)	547
AcsI	RAATTY	6 cut(s)	344, 490, 497, 517, 538, 1132
AcuI	CTGAAG	2 cut(s)	739, 810
AfaI	GTAC	4 cut(s)	151, 439, 986, 1378
AfiI	CCNNNNNNNGG	1 cut(s)	640
AgeI	ACCGGT	1 cut(s)	981
AgsI	TTSAA	8 cut(s)	202, 452, 489, 496, 522, 1138, 1263, 1441
AhlI	ACTAGT	1 cut(s)	35
AjnI	CCWGG	3 cut(s)	1105, 1371, 1404
AjuI	GAANNNNNNNTTGG	2 cut(s)	593, 625
AluBI	AGCT	7 cut(s)	19, 115, 230, 698, 997, 1064, 1331
AluI	AGCT	7 cut(s)	19, 115, 230, 698, 997, 1064, 1331
Alw21I	GWGCWC	4 cut(s)	21, 117, 735, 1340
Alw26I	GTCTC	3 cut(s)	302, 366, 1434
AlwI	GGATC	1 cut(s)	547
AlwNI	CAGNNNCTG	1 cut(s)	1000
Ama87I	CYCGRG	2 cut(s)	20, 887
AoxI	GGCC	1 cut(s)	266
ApeKI	GCWGC	5 cut(s)	230, 233, 623, 852, 1295
ApoI	RAATTY	6 cut(s)	344, 490, 497, 517, 538, 1132
AsiGI	ACCGGT	1 cut(s)	981
Asp700I	GAANNNNTTC	1 cut(s)	134
AsuHPI	GGTGA	4 cut(s)	337, 857, 1468, 1579
AvaI	CYCGRG	2 cut(s)	20, 887
BaeGI	GKGCMC	1 cut(s)	102
BaeI	ACNNNNGTAYC	2 cut(s)	1211, 1244
BanII	GRGCYC	2 cut(s)	21, 117
BarI	GAAGNNNNNNTAC	2 cut(s)	792, 824
BbsI	GAAGAC	1 cut(s)	1145
Bbv12I	GWGCWC	4 cut(s)	21, 117, 735, 1340
BbvI	GCAGC	5 cut(s)	217, 220, 610, 864, 1307
BccI	CCATC	6 cut(s)	119, 272, 329, 437, 1310, 1388
BciT130I	CCWGG	3 cut(s)	1107, 1373, 1406
BciVI	GTATCC	1 cut(s)	1212
BclI	TGATCA	1 cut(s)	193
BcoDI	GTCTC	3 cut(s)	302, 366, 1434
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	4 cut(s)	36, 42, 558, 1281
BfmI	CTRYAG	2 cut(s)	546, 1594
BfuI	GTATCC	1 cut(s)	1212
BglII	AGATCT	1 cut(s)	1277
BisI	GCNGC	7 cut(s)	231, 234, 624, 853, 856, 1049, 1296
BlsI	GCNGC	7 cut(s)	232, 235, 625, 854, 857, 1050, 1297
Bme1390I	CCNGG	3 cut(s)	1107, 1373, 1406
BmeT110I	CYCGRG	2 cut(s)	20, 887
BmiI	GGNNCC	3 cut(s)	165, 632, 726
BmrFI	CCNGG	3 cut(s)	1107, 1373, 1406
BmsI	GCATC	5 cut(s)	795, 956, 968, 1453, 1575
BpiI	GAAGAC	1 cut(s)	1145
BpmI	CTGGAG	1 cut(s)	1427
Bpu10I	CCTNAGC	2 cut(s)	237, 729
BpuEI	CTTGAG	1 cut(s)	656
BsaAI	YACGTR	1 cut(s)	1469
BsaJI	CCNNGG	5 cut(s)	263, 476, 888, 1106, 1372
BsaWI	WCCGGW	1 cut(s)	981
BsaXI	ACNNNNNCTCC	6 cut(s)	8, 38, 1063, 1093, 1404, 1434
Bsc4I	CCNNNNNNNGG	1 cut(s)	640
Bse118I	RCCGGY	1 cut(s)	981
Bse1I	ACTGG	5 cut(s)	819, 951, 1147, 1220, 1384
Bse3DI	GCAATG	3 cut(s)	88, 430, 1312
BseBI	CCWGG	3 cut(s)	1107, 1373, 1406
BseDI	CCNNGG	5 cut(s)	263, 476, 888, 1106, 1372
BseGI	GGATG	5 cut(s)	357, 580, 947, 1104, 1485
BseLI	CCNNNNNNNGG	1 cut(s)	640
BseMI	GCAATG	3 cut(s)	88, 430, 1312
BseMII	CTCAG	2 cut(s)	720, 1445
BseNI	ACTGG	5 cut(s)	819, 951, 1147, 1220, 1384
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	5 cut(s)	217, 220, 610, 864, 1307
BsgI	GTGCAG	1 cut(s)	986
BshFI	GGCC	1 cut(s)	268
BshTI	ACCGGT	1 cut(s)	981
BsiHKAI	GWGCWC	4 cut(s)	21, 117, 735, 1340
BsiHKCI	CYCGRG	2 cut(s)	20, 887
BsiSI	CCGG	1 cut(s)	982
BslFI	GGGAC	1 cut(s)	627
BslI	CCNNNNNNNGG	1 cut(s)	640
BsmAI	GTCTC	3 cut(s)	302, 366, 1434
BsmFI	GGGAC	1 cut(s)	627
BsnI	GGCC	1 cut(s)	268
BsoBI	CYCGRG	2 cut(s)	20, 887
Bsp1286I	GDGCHC	5 cut(s)	21, 102, 117, 735, 1340
Bsp143I	GATC	4 cut(s)	193, 552, 991, 1277
BspACI	CCGC	3 cut(s)	5, 855, 1048
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	2 cut(s)	721, 1444
BspLI	GGNNCC	3 cut(s)	165, 632, 726
BspPI	GGATC	1 cut(s)	547
BsrDI	GCAATG	3 cut(s)	88, 430, 1312
BsrFI	RCCGGY	1 cut(s)	981
BsrI	ACTGG	5 cut(s)	819, 951, 1147, 1220, 1384
BssAI	RCCGGY	1 cut(s)	981
BssECI	CCNNGG	5 cut(s)	263, 476, 888, 1106, 1372
BssMI	GATC	4 cut(s)	193, 552, 991, 1277
Bst2UI	CCWGG	3 cut(s)	1107, 1373, 1406
Bst6I	CTCTTC	2 cut(s)	820, 1478
BstBAI	YACGTR	1 cut(s)	1469
BstC8I	GCNNGC	4 cut(s)	60, 1152, 1156, 1340
BstDEI	CTNAG	5 cut(s)	50, 237, 729, 908, 1431
BstDSI	CCRYGG	1 cut(s)	263
BstENI	CCTNNNNNAGG	1 cut(s)	638
BstF5I	GGATG	5 cut(s)	357, 580, 947, 1104, 1485
BstKTI	GATC	4 cut(s)	196, 555, 994, 1280
BstMAI	GTCTC	3 cut(s)	302, 366, 1434
BstMBI	GATC	4 cut(s)	193, 552, 991, 1277
BstMWI	GCNNNNNNNGC	3 cut(s)	1054, 1368, 1472
BstNI	CCWGG	3 cut(s)	1107, 1373, 1406
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	3 cut(s)	1105, 1371, 1404
BstSFI	CTRYAG	2 cut(s)	546, 1594
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	5 cut(s)	217, 220, 610, 864, 1307
BstV2I	GAAGAC	1 cut(s)	1145
BstX2I	RGATCY	1 cut(s)	1277
BstXI	CCANNNNNNTGG	2 cut(s)	264, 1379
BstYI	RGATCY	1 cut(s)	1277
BsuI	GTATCC	1 cut(s)	1212
BsuRI	GGCC	1 cut(s)	268
BtgI	CCRYGG	1 cut(s)	263
BtsCI	GGATG	5 cut(s)	357, 580, 947, 1104, 1485
BtsIMutI	CAGTG	3 cut(s)	904, 958, 1213
Cac8I	GCNNGC	4 cut(s)	60, 1152, 1156, 1340
CaiI	CAGNNNCTG	1 cut(s)	1000
Cfr10I	RCCGGY	1 cut(s)	981
Csp6I	GTAC	4 cut(s)	150, 438, 985, 1377
CspAI	ACCGGT	1 cut(s)	981
CviAII	CATG	5 cut(s)	168, 431, 927, 1187, 1476
CviQI	GTAC	4 cut(s)	150, 438, 985, 1377
DdeI	CTNAG	5 cut(s)	50, 237, 729, 908, 1431
DpnI	GATC	4 cut(s)	195, 554, 993, 1279
DpnII	GATC	4 cut(s)	193, 552, 991, 1277
DraI	TTTAAA	2 cut(s)	720, 1020
DrdI	GACNNNNNNGTC	1 cut(s)	1317
DseDI	GACNNNNNNGTC	1 cut(s)	1317
Eam1104I	CTCTTC	2 cut(s)	820, 1478
EarI	CTCTTC	2 cut(s)	820, 1478
Ecl136II	GAGCTC	2 cut(s)	19, 115
Eco24I	GRGCYC	2 cut(s)	21, 117
Eco32I	GATATC	2 cut(s)	414, 895
Eco53kI	GAGCTC	2 cut(s)	19, 115
Eco57I	CTGAAG	2 cut(s)	739, 810
Eco88I	CYCGRG	2 cut(s)	20, 887
EcoICRI	GAGCTC	2 cut(s)	19, 115
EcoNI	CCTNNNNNAGG	1 cut(s)	638
EcoRI	GAATTC	1 cut(s)	517
EcoRII	CCWGG	3 cut(s)	1105, 1371, 1404
EcoRV	GATATC	2 cut(s)	414, 895
EcoT22I	ATGCAT	1 cut(s)	1590
EcoT38I	GRGCYC	2 cut(s)	21, 117
FaeI	CATG	5 cut(s)	171, 434, 930, 1190, 1479
FalI	AAGNNNNNCTT	6 cut(s)	593, 625, 860, 892, 1138, 1170
FaqI	GGGAC	1 cut(s)	627
FatI	CATG	5 cut(s)	167, 430, 926, 1186, 1475
FauNDI	CATATG	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	7 cut(s)	231, 234, 624, 853, 856, 1049, 1296
FokI	GGATG	5 cut(s)	364, 587, 934, 1111, 1492
FriOI	GRGCYC	2 cut(s)	21, 117
Fsp4HI	GCNGC	7 cut(s)	231, 234, 624, 853, 856, 1049, 1296
FspBI	CTAG	4 cut(s)	36, 42, 558, 1281
GluI	GCNGC	7 cut(s)	231, 234, 624, 853, 856, 1049, 1296
GsuI	CTGGAG	1 cut(s)	1427
HaeIII	GGCC	1 cut(s)	268
HapII	CCGG	1 cut(s)	982
Hin1II	CATG	5 cut(s)	171, 434, 930, 1190, 1479
HincII	GTYRAC	1 cut(s)	1091
HindII	GTYRAC	1 cut(s)	1091
HinfI	GANTC	7 cut(s)	359, 902, 923, 938, 1102, 1486, 1548
HpaII	CCGG	1 cut(s)	982
HphI	GGTGA	4 cut(s)	337, 857, 1468, 1579
Hpy166II	GTNNAC	2 cut(s)	1091, 1254
Hpy188I	TCNGA	7 cut(s)	119, 411, 477, 883, 1323, 1434, 1561
Hpy188III	TCNNGA	5 cut(s)	302, 365, 449, 728, 1490
Hpy8I	GTNNAC	2 cut(s)	1091, 1254
Hpy99I	CGWCG	1 cut(s)	992
HpyCH4IV	ACGT	1 cut(s)	1468
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1054, 1368, 1472
HpyF3I	CTNAG	5 cut(s)	50, 237, 729, 908, 1431
HpySE526I	ACGT	1 cut(s)	1468
Hsp92II	CATG	5 cut(s)	171, 434, 930, 1190, 1479
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	4 cut(s)	193, 552, 991, 1277
LmnI	GCTCC	4 cut(s)	16, 55, 120, 169
Lsp1109I	GCAGC	5 cut(s)	217, 220, 610, 864, 1307
LweI	GCATC	5 cut(s)	795, 956, 968, 1453, 1575
MaeI	CTAG	4 cut(s)	36, 42, 558, 1281
MaeII	ACGT	1 cut(s)	1468
MaeIII	GTNAC	4 cut(s)	241, 580, 748, 758
MalI	GATC	4 cut(s)	195, 554, 993, 1279
MboI	GATC	4 cut(s)	193, 552, 991, 1277
MflI	RGATCY	1 cut(s)	1277
MhlI	GDGCHC	5 cut(s)	21, 102, 117, 735, 1340
MlyI	GAGTC	2 cut(s)	368, 1495
MmeI	TCCRAC	1 cut(s)	336
Mph1103I	ATGCAT	1 cut(s)	1590
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	5 cut(s)	273, 719, 1019, 1577, 1606
MslI	CAYNNNNRTG	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	855
MspI	CCGG	1 cut(s)	982
MspR9I	CCNGG	3 cut(s)	1107, 1373, 1406
MvaI	CCWGG	3 cut(s)	1107, 1373, 1406
MwoI	GCNNNNNNNGC	3 cut(s)	1054, 1368, 1472
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	4 cut(s)	193, 552, 991, 1277
NlaIII	CATG	5 cut(s)	171, 434, 930, 1190, 1479
NlaIV	GGNNCC	3 cut(s)	165, 632, 726
NsiI	ATGCAT	1 cut(s)	1590
NspI	RCATGY	1 cut(s)	434
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	5 cut(s)	902, 923, 938, 1102, 1548
PinAI	ACCGGT	1 cut(s)	981
PkrI	GCNGC	7 cut(s)	232, 235, 625, 854, 857, 1050, 1297
PleI	GAGTC	2 cut(s)	367, 1494
PpsI	GAGTC	2 cut(s)	367, 1494
Ppu21I	YACGTR	1 cut(s)	1469
Psp124BI	GAGCTC	2 cut(s)	21, 117
Psp6I	CCWGG	3 cut(s)	1105, 1371, 1404
PspGI	CCWGG	3 cut(s)	1105, 1371, 1404
PspN4I	GGNNCC	3 cut(s)	165, 632, 726
PstNI	CAGNNNCTG	1 cut(s)	1000
PsuI	RGATCY	1 cut(s)	1277
RsaI	GTAC	4 cut(s)	151, 439, 986, 1378
RsaNI	GTAC	4 cut(s)	150, 438, 985, 1377
RseI	CAYNNNNRTG	1 cut(s)	105
SacI	GAGCTC	2 cut(s)	21, 117
SaqAI	TTAA	5 cut(s)	273, 719, 1019, 1577, 1606
SatI	GCNGC	7 cut(s)	231, 234, 624, 853, 856, 1049, 1296
Sau3AI	GATC	4 cut(s)	193, 552, 991, 1277
SchI	GAGTC	2 cut(s)	368, 1495
ScrFI	CCNGG	3 cut(s)	1107, 1373, 1406
SduI	GDGCHC	5 cut(s)	21, 102, 117, 735, 1340
SfaNI	GCATC	5 cut(s)	795, 956, 968, 1453, 1575
SfcI	CTRYAG	2 cut(s)	546, 1594
SmiMI	CAYNNNNRTG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	635
SmoI	CTYRAG	1 cut(s)	635
SpeI	ACTAGT	1 cut(s)	35
SsiI	CCGC	3 cut(s)	5, 855, 1048
SspI	AATATT	1 cut(s)	766
SspMI	CTAG	4 cut(s)	36, 42, 558, 1281
SstI	GAGCTC	2 cut(s)	21, 117
StyD4I	CCNGG	3 cut(s)	1105, 1371, 1404
TaiI	ACGT	1 cut(s)	1471
TaqI	TCGA	2 cut(s)	1165, 1511
TatI	WGTACW	1 cut(s)	149
TauI	GCSGC	2 cut(s)	858, 1051
TfiI	GAWTC	5 cut(s)	902, 923, 938, 1102, 1548
Tru1I	TTAA	5 cut(s)	273, 719, 1019, 1577, 1606
Tru9I	TTAA	5 cut(s)	273, 719, 1019, 1577, 1606
TscAI	CASTG	3 cut(s)	904, 958, 1220
TseI	GCWGC	5 cut(s)	230, 233, 623, 852, 1295
TspDTI	ATGAA	9 cut(s)	127, 284, 387, 546, 915, 1175, 1184, 1496, 1511
TspRI	CASTG	3 cut(s)	904, 958, 1220
XagI	CCTNNNNNAGG	1 cut(s)	638
XapI	RAATTY	6 cut(s)	344, 490, 497, 517, 538, 1132
XceI	RCATGY	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	4 cut(s)	36, 42, 558, 1281
Zsp2I	ATGCAT	1 cut(s)	1590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.