Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009338

Physical Location & Seq

Genomic Coordinates Reverse (-)

31837566 .. 31840921

Gene Structure 3356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1249000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1545 bp

ATGGCGGGAAGGTGGGACGTTGGGTTTCCAAAGACTAGTGCTAGTAGTCTTAGAGAGCAAGCAACAAGAACAATTCTTCGCAATGTGAGGTCACAAGGGCACACATATGTTGAGCTACGAGAAGAGGGGAAAAAGTTCATTTTCTTCTGCACTTTGTGCCTTGCGCCATGTTATAGTGATAAGGTGCTGTTTGATCACTTGAAGGGTAATCTTCACAATGACAGGTTAGCTGCTGCTAAGGTTACTCTCTTGCAATCAAACCCATGGCCTTTTAACGACGGTATGGTTTTCTTTCATAATTCAGATGAGATTGATAAGCAGTTGGTGGTTCCAGATGGCAATAAACGTAAGATTTTGGAGTCTCATGACAATGAAAACAATCTTGCTGTTGTCAAATATGGGGAAAATTTGATATCTAATGGCAATGGGAATTTTGGTGCTGATGGTCATGAATGTAATAAGCATTCTGATGGAGCGAATTCCTCTCTGGCGATCCCTCATATTCTGTTTAGGGATGAAATTACCGACATAGAAGTGAAGCAGGTAGGCTTTGGACAAATTGCTGCAAGGCTCCTCGAGAAGGATGAGCTGTCAAATTGTATTAGTAGAATATGGTGTGAATGGTTGGGGAAAAGGACAGATAGCAATGATTTACTCACGGTTCCTGAGCACAACTTTGCGGTCGTTGCCTTCAGTTACAATATTGATTTAGGTAGGAAGGGATTACTTGATGATGTAAAGATGCTTCTTTCATCCAGTCCTACAGAAGAAACAGAGAATGGTGAATGCAGCAGCAGTAAGAGAAAGAAATTCTTCTCTGACCCTGAAGATATTAGTGAATCTCTAAGTAATCAGTTTGATTCATGTGGGGAAGATTCATCTGCTTCCAGTGGTGCAACATCAAGATTGCTTTTAGAACGGTATGATGATCAGCTTCTGCACACAAGATTTATTAACAAGTCTATAAGGAGAGAGTTAAGACGGCAACAGCGTTTAGCTTCGGGCAGAATGTGTGATATCTGTCAACAGAAGATGCTTCCTGGGAAAGATGTAGCCACTCTCATAAATTTGAAGACAGGAAGGCTTGCTTGCAGTAGTCGAAATGTGAATGGGGCTTTTCATGTGTTTCATACTTCCTGCCTTATACACTGGATACTTCTGTGTGAAGTTGAGATGATCACGAATCAGTCCGCTAGTTCAAAAGTGAGGAGGAGATCGAGGAGAAAAACTGCAGCTAAGTGCAATGGAAAAGATGATCAGTTGATAGTATTGAGCTCACAAATGCATTCTGTATTCTGCCCAGAGTGTCAGGGCACTGGTATCCTCATAGATAACGATGACCTGGAGAAACCAAATCTCCCTCTGTCTCAGCTATTCAAGTATAAGATAAAGGTGAGTGATGCACGTAGAGCATGGATGAAGAGTCCTGAAATGTTGGAGAATTGCTCGACGGGATTTCATTTCCCTTCCCAATCTGAAGAAGGAATTGAGGTTTCTGAAAAGGTGAAACCATTGAAGTTGCTGCGTTTTTACAGAGCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

515

Amino Acids

58.02

Weight (kDa)

7.52

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28260 AT4G28260
fragaria_vesca	FvH4_6g26160 FvH4_6g26160 FvH4_6g26160 FvH4_6g26160
malus_domestica	MD09G1249000.v1.1 MD17G1241500.v1.1
prunus_persica	Prupe.3G136400_v2.0.a1 Prupe.3G136400_v2.0.a1
pyrus_communis	pycom03g02040 pycom09g16590
rosa_chinensis	RchiOBHm_Chr2g0126141
rosa_laevigata	RLG00000018889
rosa_multiflora	Rmu_sc0001052.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117400
rosa_rugosa	Rorug02G0261600
rosa_samantha	Rh2AG318500 Rh2BG326800 Rh2DG345000 Rh2DG346200
rosa_wichuraiana	Rw2G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	532
AciI	CCGC	3 cut(s)	5, 680, 1191
AclWI	GGATC	1 cut(s)	487
AcsI	RAATTY	5 cut(s)	406, 430, 478, 809, 1066
AcuI	CTGAAG	3 cut(s)	676, 846, 1497
AdeI	CACNNNGTG	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	580
AgsI	TTSAA	5 cut(s)	202, 1072, 1200, 1378, 1516
AhlI	ACTAGT	1 cut(s)	35
AjnI	CCWGG	2 cut(s)	1039, 1341
AluBI	AGCT	8 cut(s)	115, 230, 589, 934, 998, 1235, 1275, 1372
AluI	AGCT	8 cut(s)	115, 230, 589, 934, 998, 1235, 1275, 1372
Alw21I	GWGCWC	2 cut(s)	672, 1277
Alw26I	GTCTC	2 cut(s)	366, 1371
AlwI	GGATC	1 cut(s)	487
AlwNI	CAGNNNCTG	1 cut(s)	937
Ama87I	CYCGRG	1 cut(s)	575
AoxI	GGCC	1 cut(s)	266
ApeKI	GCWGC	7 cut(s)	230, 233, 563, 789, 792, 1232, 1522
ApoI	RAATTY	5 cut(s)	406, 430, 478, 809, 1066
Asp700I	GAANNNNTTC	2 cut(s)	134, 812
AspLEI	GCGC	1 cut(s)	166
AsuHPI	GGTGA	3 cut(s)	794, 1405, 1516
AvaI	CYCGRG	1 cut(s)	575
BaeGI	GKGCMC	2 cut(s)	102, 1316
BaeI	ACNNNNGTAYC	2 cut(s)	1145, 1178
BanII	GRGCYC	1 cut(s)	1277
BarI	GAAGNNNNNNTAC	2 cut(s)	729, 761
BbsI	GAAGAC	1 cut(s)	1079
Bbv12I	GWGCWC	2 cut(s)	672, 1277
BbvI	GCAGC	7 cut(s)	217, 220, 550, 801, 804, 1244, 1509
BccI	CCATC	3 cut(s)	329, 437, 464
BceAI	ACGGC	1 cut(s)	998
BciT130I	CCWGG	2 cut(s)	1041, 1343
BciVI	GTATCC	2 cut(s)	1146, 1331
BclI	TGATCA	4 cut(s)	193, 928, 1176, 1255
BcoDI	GTCTC	2 cut(s)	366, 1371
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	3 cut(s)	36, 42, 1194
BfmI	CTRYAG	2 cut(s)	762, 1230
BfuAI	ACCTGC	1 cut(s)	532
BfuI	GTATCC	2 cut(s)	1146, 1331
BisI	GCNGC	7 cut(s)	231, 234, 564, 790, 793, 1233, 1523
BlsI	GCNGC	7 cut(s)	232, 235, 565, 791, 794, 1234, 1524
Bme1390I	CCNGG	2 cut(s)	1041, 1343
BmeT110I	CYCGRG	1 cut(s)	575
BmiI	GGNNCC	3 cut(s)	330, 572, 663
BmrFI	CCNGG	2 cut(s)	1041, 1343
BmsI	GCATC	3 cut(s)	732, 1023, 1390
BpiI	GAAGAC	1 cut(s)	1079
BplI	GAGNNNNNCTC	2 cut(s)	1430, 1462
BpmI	CTGGAG	1 cut(s)	1364
Bpu10I	CCTNAGC	2 cut(s)	237, 666
BsaAI	YACGTR	1 cut(s)	1406
BsaJI	CCNNGG	2 cut(s)	263, 1040
BsaXI	ACNNNNNCTCC	2 cut(s)	1341, 1371
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse1I	ACTGG	4 cut(s)	756, 888, 1154, 1321
Bse3DI	GCAATG	4 cut(s)	88, 430, 652, 1249
BseBI	CCWGG	2 cut(s)	1041, 1343
BseDI	CCNNGG	2 cut(s)	263, 1040
BseGI	GGATG	4 cut(s)	520, 589, 752, 1422
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMI	GCAATG	4 cut(s)	88, 430, 652, 1249
BseMII	CTCAG	2 cut(s)	657, 1382
BseNI	ACTGG	4 cut(s)	756, 888, 1154, 1321
BseRI	GAGGAG	4 cut(s)	563, 1222, 1225, 1234
BseSI	GKGCMC	2 cut(s)	102, 1316
BseXI	GCAGC	7 cut(s)	217, 220, 550, 801, 804, 1244, 1509
BsgI	GTGCAG	2 cut(s)	133, 923
Bsh1285I	CGRYCG	1 cut(s)	684
BshFI	GGCC	1 cut(s)	268
BsiEI	CGRYCG	1 cut(s)	684
BsiHKAI	GWGCWC	2 cut(s)	672, 1277
BsiHKCI	CYCGRG	1 cut(s)	575
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmAI	GTCTC	2 cut(s)	366, 1371
BsmFI	GGGAC	1 cut(s)	29
BsmI	GAATGC	3 cut(s)	463, 791, 1285
BsnI	GGCC	1 cut(s)	268
BsoBI	CYCGRG	1 cut(s)	575
Bsp1286I	GDGCHC	4 cut(s)	102, 672, 1277, 1316
Bsp143I	GATC	6 cut(s)	193, 492, 928, 1176, 1214, 1255
Bsp19I	CCATGG	1 cut(s)	263
BspACI	CCGC	3 cut(s)	5, 680, 1191
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	2 cut(s)	658, 1381
BspHI	TCATGA	2 cut(s)	364, 448
BspLI	GGNNCC	3 cut(s)	330, 572, 663
BspMAI	CTGCAG	1 cut(s)	1234
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	1 cut(s)	487
BsrDI	GCAATG	4 cut(s)	88, 430, 652, 1249
BsrI	ACTGG	4 cut(s)	756, 888, 1154, 1321
BssECI	CCNNGG	2 cut(s)	263, 1040
BssMI	GATC	6 cut(s)	193, 492, 928, 1176, 1214, 1255
BssT1I	CCWWGG	1 cut(s)	263
Bst2UI	CCWGG	2 cut(s)	1041, 1343
Bst4CI	ACNGT	3 cut(s)	281, 661, 921
Bst6I	CTCTTC	2 cut(s)	117, 1415
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	1406
BstC8I	GCNNGC	3 cut(s)	60, 1086, 1090
BstDEI	CTNAG	6 cut(s)	50, 237, 666, 845, 1236, 1368
BstDSI	CCRYGG	1 cut(s)	263
BstENI	CCTNNNNNAGG	1 cut(s)	578
BstF5I	GGATG	4 cut(s)	520, 589, 752, 1422
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	6 cut(s)	196, 495, 931, 1179, 1217, 1258
BstMAI	GTCTC	2 cut(s)	366, 1371
BstMBI	GATC	6 cut(s)	193, 492, 928, 1176, 1214, 1255
BstMCI	CGRYCG	1 cut(s)	684
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 686, 1409
BstNI	CCWGG	2 cut(s)	1041, 1343
BstSCI	CCNGG	2 cut(s)	1039, 1341
BstSFI	CTRYAG	2 cut(s)	762, 1230
BstSLI	GKGCMC	2 cut(s)	102, 1316
BstV1I	GCAGC	7 cut(s)	217, 220, 550, 801, 804, 1244, 1509
BstV2I	GAAGAC	1 cut(s)	1079
BsuI	GTATCC	2 cut(s)	1146, 1331
BsuRI	GGCC	1 cut(s)	268
BtgI	CCRYGG	1 cut(s)	263
BtsCI	GGATG	4 cut(s)	520, 589, 752, 1422
BtsIMutI	CAGTG	3 cut(s)	895, 1147, 1314
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	3 cut(s)	60, 1086, 1090
CaiI	CAGNNNCTG	1 cut(s)	937
CciI	TCATGA	2 cut(s)	364, 448
CfoI	GCGC	1 cut(s)	166
CviAII	CATG	7 cut(s)	168, 264, 365, 449, 864, 1121, 1413
DdeI	CTNAG	6 cut(s)	50, 237, 666, 845, 1236, 1368
DpnI	GATC	6 cut(s)	195, 494, 930, 1178, 1216, 1257
DpnII	GATC	6 cut(s)	193, 492, 928, 1176, 1214, 1255
DraIII	CACNNNGTG	1 cut(s)	156
Eam1104I	CTCTTC	2 cut(s)	117, 1415
EarI	CTCTTC	2 cut(s)	117, 1415
Ecl136II	GAGCTC	1 cut(s)	1275
Eco130I	CCWWGG	1 cut(s)	263
Eco24I	GRGCYC	1 cut(s)	1277
Eco32I	GATATC	2 cut(s)	414, 1018
Eco53kI	GAGCTC	1 cut(s)	1275
Eco57I	CTGAAG	3 cut(s)	676, 846, 1497
Eco88I	CYCGRG	1 cut(s)	575
EcoICRI	GAGCTC	1 cut(s)	1275
EcoNI	CCTNNNNNAGG	1 cut(s)	578
EcoRI	GAATTC	1 cut(s)	478
EcoRII	CCWGG	2 cut(s)	1039, 1341
EcoRV	GATATC	2 cut(s)	414, 1018
EcoT14I	CCWWGG	1 cut(s)	263
EcoT22I	ATGCAT	1 cut(s)	1287
EcoT38I	GRGCYC	1 cut(s)	1277
ErhI	CCWWGG	1 cut(s)	263
FaeI	CATG	7 cut(s)	171, 267, 368, 452, 867, 1124, 1416
FalI	AAGNNNNNCTT	4 cut(s)	797, 829, 1072, 1104
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	7 cut(s)	167, 263, 364, 448, 863, 1120, 1412
FauNDI	CATATG	1 cut(s)	106
FbaI	TGATCA	4 cut(s)	193, 928, 1176, 1255
Fnu4HI	GCNGC	7 cut(s)	231, 234, 564, 790, 793, 1233, 1523
FokI	GGATG	4 cut(s)	527, 596, 739, 1429
FriOI	GRGCYC	1 cut(s)	1277
Fsp4HI	GCNGC	7 cut(s)	231, 234, 564, 790, 793, 1233, 1523
FspBI	CTAG	3 cut(s)	36, 42, 1194
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	7 cut(s)	231, 234, 564, 790, 793, 1233, 1523
GsuI	CTGGAG	1 cut(s)	1364
HaeIII	GGCC	1 cut(s)	268
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	7 cut(s)	171, 267, 368, 452, 867, 1124, 1416
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	1025
HindII	GTYRAC	1 cut(s)	1025
HinfI	GANTC	6 cut(s)	359, 839, 860, 875, 1183, 1423
HphI	GGTGA	3 cut(s)	794, 1405, 1516
Hpy166II	GTNNAC	1 cut(s)	1025
Hpy188I	TCNGA	5 cut(s)	304, 469, 820, 1477, 1498
Hpy188III	TCNNGA	8 cut(s)	332, 365, 449, 577, 665, 903, 1180, 1427
Hpy8I	GTNNAC	1 cut(s)	1025
Hpy99I	CGWCG	2 cut(s)	281, 1453
HpyAV	CCTTC	8 cut(s)	3, 196, 574, 700, 712, 1074, 1475, 1476
HpyCH4III	ACNGT	3 cut(s)	281, 661, 921
HpyCH4IV	ACGT	3 cut(s)	18, 346, 1405
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 686, 1409
HpyF3I	CTNAG	6 cut(s)	50, 237, 666, 845, 1236, 1368
HpySE526I	ACGT	3 cut(s)	18, 346, 1405
Hsp92II	CATG	7 cut(s)	171, 267, 368, 452, 867, 1124, 1416
HspAI	GCGC	1 cut(s)	164
Ksp22I	TGATCA	4 cut(s)	193, 928, 1176, 1255
Kzo9I	GATC	6 cut(s)	193, 492, 928, 1176, 1214, 1255
LmnI	GCTCC	2 cut(s)	473, 576
Lsp1109I	GCAGC	7 cut(s)	217, 220, 550, 801, 804, 1244, 1509
LweI	GCATC	3 cut(s)	732, 1023, 1390
MaeI	CTAG	3 cut(s)	36, 42, 1194
MaeII	ACGT	3 cut(s)	18, 346, 1405
MaeIII	GTNAC	3 cut(s)	90, 241, 695
MalI	GATC	6 cut(s)	195, 494, 930, 1178, 1216, 1257
MboI	GATC	6 cut(s)	193, 492, 928, 1176, 1214, 1255
MhlI	GDGCHC	4 cut(s)	102, 672, 1277, 1316
MlyI	GAGTC	2 cut(s)	368, 1432
MmeI	TCCRAC	1 cut(s)	1416
Mph1103I	ATGCAT	1 cut(s)	1287
MroXI	GAANNNNTTC	2 cut(s)	134, 812
MseI	TTAA	3 cut(s)	273, 954, 977
MslI	CAYNNNNRTG	4 cut(s)	105, 369, 468, 533
MspR9I	CCNGG	2 cut(s)	1041, 1343
Mva1269I	GAATGC	3 cut(s)	463, 791, 1285
MvaI	CCWGG	2 cut(s)	1041, 1343
MwoI	GCNNNNNNNGC	3 cut(s)	156, 686, 1409
NcoI	CCATGG	1 cut(s)	263
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	6 cut(s)	193, 492, 928, 1176, 1214, 1255
NlaIII	CATG	7 cut(s)	171, 267, 368, 452, 867, 1124, 1416
NlaIV	GGNNCC	3 cut(s)	330, 572, 663
NmuCI	GTSAC	1 cut(s)	90
NsiI	ATGCAT	1 cut(s)	1287
PaeR7I	CTCGAG	1 cut(s)	575
PagI	TCATGA	2 cut(s)	364, 448
PcsI	WCGNNNNNNNCGW	1 cut(s)	988
PctI	GAATGC	3 cut(s)	463, 791, 1285
PdmI	GAANNNNTTC	2 cut(s)	134, 812
PfeI	GAWTC	4 cut(s)	839, 860, 875, 1183
PkrI	GCNGC	7 cut(s)	232, 235, 565, 791, 794, 1234, 1524
PleI	GAGTC	2 cut(s)	367, 1431
PpsI	GAGTC	2 cut(s)	367, 1431
Ppu21I	YACGTR	1 cut(s)	1406
Psp124BI	GAGCTC	1 cut(s)	1277
Psp6I	CCWGG	2 cut(s)	1039, 1341
PspGI	CCWGG	2 cut(s)	1039, 1341
PspN4I	GGNNCC	3 cut(s)	330, 572, 663
PstI	CTGCAG	1 cut(s)	1234
PstNI	CAGNNNCTG	1 cut(s)	937
RseI	CAYNNNNRTG	4 cut(s)	105, 369, 468, 533
SacI	GAGCTC	1 cut(s)	1277
SaqAI	TTAA	3 cut(s)	273, 954, 977
SatI	GCNGC	7 cut(s)	231, 234, 564, 790, 793, 1233, 1523
Sau3AI	GATC	6 cut(s)	193, 492, 928, 1176, 1214, 1255
SchI	GAGTC	2 cut(s)	368, 1432
ScrFI	CCNGG	2 cut(s)	1041, 1343
SduI	GDGCHC	4 cut(s)	102, 672, 1277, 1316
SfaNI	GCATC	3 cut(s)	732, 1023, 1390
SfcI	CTRYAG	2 cut(s)	762, 1230
Sfr274I	CTCGAG	1 cut(s)	575
SlaI	CTCGAG	1 cut(s)	575
SmiMI	CAYNNNNRTG	4 cut(s)	105, 369, 468, 533
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
SpeI	ACTAGT	1 cut(s)	35
SsiI	CCGC	3 cut(s)	5, 680, 1191
SspI	AATATT	1 cut(s)	703
SspMI	CTAG	3 cut(s)	36, 42, 1194
SstI	GAGCTC	1 cut(s)	1277
StyD4I	CCNGG	2 cut(s)	1039, 1341
StyI	CCWWGG	1 cut(s)	263
TaaI	ACNGT	3 cut(s)	281, 661, 921
TaiI	ACGT	3 cut(s)	21, 349, 1408
TaqI	TCGA	4 cut(s)	576, 1099, 1217, 1448
TfiI	GAWTC	4 cut(s)	839, 860, 875, 1183
Tru1I	TTAA	3 cut(s)	273, 954, 977
Tru9I	TTAA	3 cut(s)	273, 954, 977
TscAI	CASTG	3 cut(s)	895, 1154, 1321
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	7 cut(s)	230, 233, 563, 789, 792, 1232, 1522
Tsp45I	GTSAC	1 cut(s)	90
TspRI	CASTG	3 cut(s)	895, 1154, 1321
XagI	CCTNNNNNAGG	1 cut(s)	578
XapI	RAATTY	5 cut(s)	406, 430, 478, 809, 1066
XhoI	CTCGAG	1 cut(s)	575
XmnI	GAANNNNTTC	2 cut(s)	134, 812
XspI	CTAG	3 cut(s)	36, 42, 1194
Zsp2I	ATGCAT	1 cut(s)	1287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.