Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009338

Physical Location & Seq

Genomic Coordinates Reverse (-)

16903271 .. 16904780

Gene Structure 1510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGCGGGAAGGTGGGACGTTGGGTTTCCAAAGACTAGTGCTAGTAGTCTTAGAGAGCAAGCAACAAGAACAATTCTTCGCAACGTGAGGTCACAAGGGCACACATATGTTGAGCTACGAGAAAAGGGGAAAAAGTTCATTTTCTTCTGCACTTTGTGCCTTGCGCCATGTTATAGTGATAAGGTGCTGTTTGATCACTTGAAGGGTAATCTTCACAATGACAGGTTAGCTGCTGCTAAGGTTACTCTCTTGCAATCAAACCCGTGGCCTTTTAACGACGGTATGGTTTTCTTTCATAATTCAGATGAGACTGATAAGCAGTTGGTGGTTCCAGATGGCAATAAATGTAAGATTATAGAGTCTCATGACAATGAAAACAATCTTGCTGTTGTCAAATATGGGGAAAATTTGATATCTAATGGCAATGGGAATTTTGGTGCTGATGGTCATGAATGTAATGAGCATTCTGATGGAGCGAACTCCTCCGTGGCGATTCCTCATATTCTGTTTAGGGATGAAATTACTGACATAGAAGTGAAGCAGGTAGGCTTTGGACAAATTGCTGCAAGGCTCCTCGAGAAGGATGAGCTGTCAAATTGTATTAGTAGAATATGGTGTGAATGGTTGGGGAAAAGGACAGATAGCAATGTTTTGCTCAAGGTTCCTGAGCATGACTTTGCGGTCGTTACCTTCAGTTACAATATTGATTTAGGTAGGAAGGGATTACTTGACGATGTAAAGATGCTTCTTTCATCCAGTCCTACAGAAGAAACAGAGAATGGTGAATGCAGCAGCGGTAAGAAAAAGAAATTCTTCTCTGACCCTGAGGATATTAGCGAATCTCTAAGTAATCAGTTTGATTCATGTGGGGAAGATTCATCTGCTTCCAGCGGTGCAACGTCAAGATTGCTTTTAGAACGGTATGATGATCTTCTGCACACAAGATTTATTAACAAGTCTATAAGGAGAGAGTTAAGACGGCAACAGCGTTTAGCTTCGGGCAGAATGTGTGATATCTGTCAACAGAAGATGCTTCCTGGGAAAGATGTAGCCACTCTCATAAATTTGAAGACAGGAAGGCTCGCTTGCAGTAGTCGAAATGTGAATGGGGCTTTTCACGTGTTTCATACTTCCTGCCTTATACACTGGATACTTTTGTGTGAAGTTGAGATGATCACGAATAAGTCCGCTAGTTCAAAAGTCAGGAGAAGATCTAGGAGAAAAACTGCAGCTAAGTGCAATGGAAAATACTTGGATCGATCAGTTGATAGCTTTGAGCTCACAAATGAATTCTGTATTCTGCCCAGAGTGTCAGGGCACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

442

Amino Acids

49.66

Weight (kDa)

8.09

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28260 AT4G28260
fragaria_vesca	FvH4_6g26160 FvH4_6g26160 FvH4_6g26160 FvH4_6g26160
malus_domestica	MD09G1249000.v1.1 MD17G1241500.v1.1
prunus_persica	Prupe.3G136400_v2.0.a1 Prupe.3G136400_v2.0.a1
pyrus_communis	pycom03g02040 pycom09g16590
rosa_chinensis	RchiOBHm_Chr2g0126141
rosa_laevigata	RLG00000018889
rosa_multiflora	Rmu_sc0001052.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117400
rosa_rugosa	Rorug02G0261600
rosa_samantha	Rh2AG318500 Rh2BG326800 Rh2DG345000 Rh2DG346200
rosa_wichuraiana	Rw2G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	680
Acc36I	ACCTGC	1 cut(s)	532
AciI	CCGC	5 cut(s)	5, 680, 795, 891, 1188
AclWI	GGATC	1 cut(s)	1263
AcsI	RAATTY	5 cut(s)	406, 430, 809, 1063, 1289
AcuI	CTGAAG	1 cut(s)	676
AcvI	CACGTG	1 cut(s)	1120
AdeI	CACNNNGTG	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	580
AflIII	ACRYGT	1 cut(s)	1119
AgsI	TTSAA	3 cut(s)	202, 1069, 1197
AhlI	ACTAGT	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	1036
AluBI	AGCT	7 cut(s)	115, 230, 589, 995, 1232, 1272, 1279
AluI	AGCT	7 cut(s)	115, 230, 589, 995, 1232, 1272, 1279
Alw21I	GWGCWC	1 cut(s)	1281
Alw26I	GTCTC	2 cut(s)	302, 366
AlwI	GGATC	1 cut(s)	1263
Ama87I	CYCGRG	1 cut(s)	575
AoxI	GGCC	1 cut(s)	266
ApeKI	GCWGC	6 cut(s)	230, 233, 563, 789, 792, 1229
ApoI	RAATTY	5 cut(s)	406, 430, 809, 1063, 1289
Asp700I	GAANNNNTTC	2 cut(s)	134, 812
AspLEI	GCGC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	794
AvaI	CYCGRG	1 cut(s)	575
AxyI	CCTNAGG	1 cut(s)	825
BaeGI	GKGCMC	2 cut(s)	102, 1320
BaeI	ACNNNNGTAYC	2 cut(s)	1142, 1175
BanII	GRGCYC	1 cut(s)	1281
BarI	GAAGNNNNNNTAC	2 cut(s)	729, 761
BbrPI	CACGTG	1 cut(s)	1120
BbsI	GAAGAC	1 cut(s)	1076
Bbv12I	GWGCWC	1 cut(s)	1281
BbvI	GCAGC	6 cut(s)	217, 220, 550, 801, 804, 1241
BccI	CCATC	3 cut(s)	329, 437, 464
BceAI	ACGGC	1 cut(s)	995
BciT130I	CCWGG	1 cut(s)	1038
BciVI	GTATCC	1 cut(s)	1143
BclI	TGATCA	2 cut(s)	193, 1173
BcoDI	GTCTC	2 cut(s)	302, 366
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	4 cut(s)	36, 42, 1191, 1215
BfmI	CTRYAG	2 cut(s)	762, 1227
BfuAI	ACCTGC	1 cut(s)	532
BfuI	GTATCC	1 cut(s)	1143
BglII	AGATCT	1 cut(s)	1211
BisI	GCNGC	6 cut(s)	231, 234, 564, 790, 793, 1230
BlsI	GCNGC	6 cut(s)	232, 235, 565, 791, 794, 1231
Bme1390I	CCNGG	1 cut(s)	1038
BmeT110I	CYCGRG	1 cut(s)	575
BmiI	GGNNCC	3 cut(s)	330, 572, 663
BmrFI	CCNGG	1 cut(s)	1038
BmsI	GCATC	2 cut(s)	732, 1020
BpiI	GAAGAC	1 cut(s)	1076
Bpu10I	CCTNAGC	2 cut(s)	237, 666
BpuEI	CTTGAG	1 cut(s)	641
Bsa29I	ATCGAT	1 cut(s)	1258
BsaAI	YACGTR	1 cut(s)	1120
BsaJI	CCNNGG	3 cut(s)	263, 486, 1037
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse1I	ACTGG	3 cut(s)	756, 1151, 1325
Bse21I	CCTNAGG	1 cut(s)	825
Bse3DI	GCAATG	3 cut(s)	430, 652, 1246
BseBI	CCWGG	1 cut(s)	1038
BseCI	ATCGAT	1 cut(s)	1258
BseDI	CCNNGG	3 cut(s)	263, 486, 1037
BseGI	GGATG	3 cut(s)	520, 589, 752
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMI	GCAATG	3 cut(s)	430, 652, 1246
BseMII	CTCAG	2 cut(s)	657, 816
BseNI	ACTGG	3 cut(s)	756, 1151, 1325
BseRI	GAGGAG	2 cut(s)	472, 563
BseSI	GKGCMC	2 cut(s)	102, 1320
BseXI	GCAGC	6 cut(s)	217, 220, 550, 801, 804, 1241
BsgI	GTGCAG	2 cut(s)	133, 920
Bsh1285I	CGRYCG	1 cut(s)	684
BshFI	GGCC	1 cut(s)	268
BshVI	ATCGAT	1 cut(s)	1258
BsiEI	CGRYCG	1 cut(s)	684
BsiHKAI	GWGCWC	1 cut(s)	1281
BsiHKCI	CYCGRG	1 cut(s)	575
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmAI	GTCTC	2 cut(s)	302, 366
BsmFI	GGGAC	1 cut(s)	29
BsmI	GAATGC	2 cut(s)	463, 791
BsnI	GGCC	1 cut(s)	268
BsoBI	CYCGRG	1 cut(s)	575
Bsp1286I	GDGCHC	3 cut(s)	102, 1281, 1320
Bsp143I	GATC	6 cut(s)	193, 928, 1173, 1211, 1255, 1259
BspACI	CCGC	5 cut(s)	5, 680, 795, 891, 1188
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	2 cut(s)	658, 817
BspDI	ATCGAT	1 cut(s)	1258
BspHI	TCATGA	2 cut(s)	364, 448
BspLI	GGNNCC	3 cut(s)	330, 572, 663
BspMAI	CTGCAG	1 cut(s)	1231
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	1 cut(s)	1263
BsrDI	GCAATG	3 cut(s)	430, 652, 1246
BsrI	ACTGG	3 cut(s)	756, 1151, 1325
BssECI	CCNNGG	3 cut(s)	263, 486, 1037
BssMI	GATC	6 cut(s)	193, 928, 1173, 1211, 1255, 1259
Bst2UI	CCWGG	1 cut(s)	1038
Bst4CI	ACNGT	2 cut(s)	281, 921
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	1120
BstC8I	GCNNGC	3 cut(s)	60, 1083, 1087
BstDEI	CTNAG	6 cut(s)	50, 237, 666, 825, 845, 1233
BstDSI	CCRYGG	2 cut(s)	263, 486
BstENI	CCTNNNNNAGG	1 cut(s)	578
BstF5I	GGATG	3 cut(s)	520, 589, 752
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	6 cut(s)	196, 931, 1176, 1214, 1258, 1262
BstMAI	GTCTC	2 cut(s)	302, 366
BstMBI	GATC	6 cut(s)	193, 928, 1173, 1211, 1255, 1259
BstMCI	CGRYCG	1 cut(s)	684
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	1 cut(s)	1038
BstSCI	CCNGG	1 cut(s)	1036
BstSFI	CTRYAG	2 cut(s)	762, 1227
BstSLI	GKGCMC	2 cut(s)	102, 1320
BstV1I	GCAGC	6 cut(s)	217, 220, 550, 801, 804, 1241
BstV2I	GAAGAC	1 cut(s)	1076
BstX2I	RGATCY	1 cut(s)	1211
BstYI	RGATCY	1 cut(s)	1211
Bsu15I	ATCGAT	1 cut(s)	1258
Bsu36I	CCTNAGG	1 cut(s)	825
BsuI	GTATCC	1 cut(s)	1143
BsuRI	GGCC	1 cut(s)	268
BsuTUI	ATCGAT	1 cut(s)	1258
BtgI	CCRYGG	2 cut(s)	263, 486
BtsCI	GGATG	3 cut(s)	520, 589, 752
BtsIMutI	CAGTG	2 cut(s)	1144, 1318
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	3 cut(s)	60, 1083, 1087
CciI	TCATGA	2 cut(s)	364, 448
CfoI	GCGC	1 cut(s)	166
ClaI	ATCGAT	1 cut(s)	1258
CviAII	CATG	5 cut(s)	168, 365, 449, 671, 864
DdeI	CTNAG	6 cut(s)	50, 237, 666, 825, 845, 1233
DpnI	GATC	6 cut(s)	195, 930, 1175, 1213, 1257, 1261
DpnII	GATC	6 cut(s)	193, 928, 1173, 1211, 1255, 1259
DraIII	CACNNNGTG	1 cut(s)	156
DrdI	GACNNNNNNGTC	1 cut(s)	680
DseDI	GACNNNNNNGTC	1 cut(s)	680
Ecl136II	GAGCTC	1 cut(s)	1279
Eco24I	GRGCYC	1 cut(s)	1281
Eco32I	GATATC	2 cut(s)	414, 1015
Eco53kI	GAGCTC	1 cut(s)	1279
Eco57I	CTGAAG	1 cut(s)	676
Eco72I	CACGTG	1 cut(s)	1120
Eco81I	CCTNAGG	1 cut(s)	825
Eco88I	CYCGRG	1 cut(s)	575
EcoICRI	GAGCTC	1 cut(s)	1279
EcoNI	CCTNNNNNAGG	1 cut(s)	578
EcoRI	GAATTC	1 cut(s)	1289
EcoRII	CCWGG	1 cut(s)	1036
EcoRV	GATATC	2 cut(s)	414, 1015
EcoT38I	GRGCYC	1 cut(s)	1281
FaeI	CATG	5 cut(s)	171, 368, 452, 674, 867
FalI	AAGNNNNNCTT	4 cut(s)	797, 829, 1069, 1101
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	5 cut(s)	167, 364, 448, 670, 863
FauNDI	CATATG	1 cut(s)	106
FbaI	TGATCA	2 cut(s)	193, 1173
Fnu4HI	GCNGC	6 cut(s)	231, 234, 564, 790, 793, 1230
FokI	GGATG	3 cut(s)	527, 596, 739
FriOI	GRGCYC	1 cut(s)	1281
Fsp4HI	GCNGC	6 cut(s)	231, 234, 564, 790, 793, 1230
FspBI	CTAG	4 cut(s)	36, 42, 1191, 1215
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	6 cut(s)	231, 234, 564, 790, 793, 1230
HaeIII	GGCC	1 cut(s)	268
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	5 cut(s)	171, 368, 452, 674, 867
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	1022
HindII	GTYRAC	1 cut(s)	1022
HinfI	GANTC	5 cut(s)	359, 493, 839, 860, 875
HphI	GGTGA	1 cut(s)	794
Hpy166II	GTNNAC	1 cut(s)	1022
Hpy188I	TCNGA	3 cut(s)	304, 469, 820
Hpy188III	TCNNGA	8 cut(s)	332, 365, 449, 577, 665, 903, 1177, 1204
Hpy8I	GTNNAC	1 cut(s)	1022
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	6 cut(s)	3, 196, 574, 700, 712, 1071
HpyCH4III	ACNGT	2 cut(s)	281, 921
HpyCH4IV	ACGT	4 cut(s)	18, 84, 899, 1119
HpyCH4V	TGCA	9 cut(s)	150, 253, 566, 789, 896, 937, 1089, 1229, 1239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	6 cut(s)	50, 237, 666, 825, 845, 1233
HpySE526I	ACGT	4 cut(s)	18, 84, 899, 1119
Hsp92II	CATG	5 cut(s)	171, 368, 452, 674, 867
HspAI	GCGC	1 cut(s)	164
Ksp22I	TGATCA	2 cut(s)	193, 1173
Kzo9I	GATC	6 cut(s)	193, 928, 1173, 1211, 1255, 1259
LmnI	GCTCC	2 cut(s)	473, 576
Lsp1109I	GCAGC	6 cut(s)	217, 220, 550, 801, 804, 1241
LweI	GCATC	2 cut(s)	732, 1020
MaeI	CTAG	4 cut(s)	36, 42, 1191, 1215
MaeII	ACGT	4 cut(s)	18, 84, 899, 1119
MaeIII	GTNAC	4 cut(s)	90, 241, 685, 695
MalI	GATC	6 cut(s)	195, 930, 1175, 1213, 1257, 1261
MboI	GATC	6 cut(s)	193, 928, 1173, 1211, 1255, 1259
MflI	RGATCY	1 cut(s)	1211
MhlI	GDGCHC	3 cut(s)	102, 1281, 1320
MlyI	GAGTC	1 cut(s)	368
MnlI	CCTC	5 cut(s)	81, 493, 507, 584, 820
MroXI	GAANNNNTTC	2 cut(s)	134, 812
MseI	TTAA	3 cut(s)	273, 951, 974
MslI	CAYNNNNRTG	4 cut(s)	105, 369, 468, 533
MspA1I	CMGCKG	2 cut(s)	795, 891
MspR9I	CCNGG	1 cut(s)	1038
Mva1269I	GAATGC	2 cut(s)	463, 791
MvaI	CCWGG	1 cut(s)	1038
MwoI	GCNNNNNNNGC	1 cut(s)	156
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	6 cut(s)	193, 928, 1173, 1211, 1255, 1259
NlaIII	CATG	5 cut(s)	171, 368, 452, 674, 867
NlaIV	GGNNCC	3 cut(s)	330, 572, 663
NmuCI	GTSAC	1 cut(s)	90
PaeR7I	CTCGAG	1 cut(s)	575
PagI	TCATGA	2 cut(s)	364, 448
PcsI	WCGNNNNNNNCGW	1 cut(s)	985
PctI	GAATGC	2 cut(s)	463, 791
PdmI	GAANNNNTTC	2 cut(s)	134, 812
PfeI	GAWTC	4 cut(s)	493, 839, 860, 875
PkrI	GCNGC	6 cut(s)	232, 235, 565, 791, 794, 1231
PleI	GAGTC	1 cut(s)	367
PmaCI	CACGTG	1 cut(s)	1120
PmlI	CACGTG	1 cut(s)	1120
PpsI	GAGTC	1 cut(s)	367
Ppu21I	YACGTR	1 cut(s)	1120
Psp124BI	GAGCTC	1 cut(s)	1281
Psp6I	CCWGG	1 cut(s)	1036
PspCI	CACGTG	1 cut(s)	1120
PspGI	CCWGG	1 cut(s)	1036
PspN4I	GGNNCC	3 cut(s)	330, 572, 663
PstI	CTGCAG	1 cut(s)	1231
PsuI	RGATCY	1 cut(s)	1211
RseI	CAYNNNNRTG	4 cut(s)	105, 369, 468, 533
SacI	GAGCTC	1 cut(s)	1281
SaqAI	TTAA	3 cut(s)	273, 951, 974
SatI	GCNGC	6 cut(s)	231, 234, 564, 790, 793, 1230
Sau3AI	GATC	6 cut(s)	193, 928, 1173, 1211, 1255, 1259
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	1 cut(s)	1038
SduI	GDGCHC	3 cut(s)	102, 1281, 1320
SfaNI	GCATC	2 cut(s)	732, 1020
SfcI	CTRYAG	2 cut(s)	762, 1227
Sfr274I	CTCGAG	1 cut(s)	575
SlaI	CTCGAG	1 cut(s)	575
SmiMI	CAYNNNNRTG	4 cut(s)	105, 369, 468, 533
SmlI	CTYRAG	2 cut(s)	575, 656
SmoI	CTYRAG	2 cut(s)	575, 656
SpeI	ACTAGT	1 cut(s)	35
SsiI	CCGC	5 cut(s)	5, 680, 795, 891, 1188
SspI	AATATT	1 cut(s)	703
SspMI	CTAG	4 cut(s)	36, 42, 1191, 1215
SstI	GAGCTC	1 cut(s)	1281
StyD4I	CCNGG	1 cut(s)	1036
TaaI	ACNGT	2 cut(s)	281, 921
TaiI	ACGT	4 cut(s)	21, 87, 902, 1122
TaqI	TCGA	3 cut(s)	576, 1096, 1258
TfiI	GAWTC	4 cut(s)	493, 839, 860, 875
Tru1I	TTAA	3 cut(s)	273, 951, 974
Tru9I	TTAA	3 cut(s)	273, 951, 974
TscAI	CASTG	2 cut(s)	1151, 1325
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	6 cut(s)	230, 233, 563, 789, 792, 1229
Tsp45I	GTSAC	1 cut(s)	90
TspGWI	ACGGA	1 cut(s)	475
TspRI	CASTG	2 cut(s)	1151, 1325
XagI	CCTNNNNNAGG	1 cut(s)	578
XapI	RAATTY	5 cut(s)	406, 430, 809, 1063, 1289
XhoI	CTCGAG	1 cut(s)	575
XmnI	GAANNNNTTC	2 cut(s)	134, 812
XspI	CTAG	4 cut(s)	36, 42, 1191, 1215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.