Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009338

Physical Location & Seq

Genomic Coordinates Reverse (-)

1542812 .. 1543444

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g02040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAACATTCAATTGTTTGATCACTTGAAGGATGGCAATAAGCGTAAGATTTTGGAGTTTCATGACAATGAAAACAATCTTGTTGTTGTCAAATATGGGGAAAATTTGATATCCAATGGCAATGAGAATTTTGGTGCTGATGGTCATGAATGTAATGAGCATTCTGATGGAGTGAATTCCTCTGCGGTGATCCCTCATATTCTGTTTAGGGATGAAATTATTGACATAGAAGTGAAGCAGGTAGGCTTTGGACAAATTGCTACAAGGTTTCTTGAGAAGAATGAGGTGCCAAATTGTATTAGTAGAATATGGTGTCAATGGTTGGGGAAAATGACAGCTAGCAATGGTTTACTCAAGGTTCCTGAGCATGACTTTGTTGTCGTTACCTTCAACTACAATATTGATTTAGGTAGAAAAGGGTTACTTGATGATGTAAAGTTGCTTCTTTCATCCAGTCTTACAGAAGAAACAGAGAATGGTGAATGCAGCAGTAGTAAGAGAAAGAAGTTCTTTTCTGACCCCGAGGATATTAGTGAATCTTTAAGTAATCAATTTGATTCATGTGGGGAAGATTTATCTGCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

196

Amino Acids

21.9

Weight (kDa)

4.77

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28260 AT4G28260
fragaria_vesca	FvH4_6g26160 FvH4_6g26160 FvH4_6g26160 FvH4_6g26160
malus_domestica	MD09G1249000.v1.1 MD17G1241500.v1.1
prunus_persica	Prupe.3G136400_v2.0.a1 Prupe.3G136400_v2.0.a1
pyrus_communis	pycom03g02040 pycom09g16590
rosa_chinensis	RchiOBHm_Chr2g0126141
rosa_laevigata	RLG00000018889
rosa_multiflora	Rmu_sc0001052.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117400
rosa_rugosa	Rorug02G0261600
rosa_samantha	Rh2AG318500 Rh2BG326800 Rh2DG345000 Rh2DG346200
rosa_wichuraiana	Rw2G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	229
AccB1I	GGYRCC	1 cut(s)	286
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	1 cut(s)	184
AcsI	RAATTY	3 cut(s)	103, 127, 175
AgsI	TTSAA	3 cut(s)	11, 28, 391
AluBI	AGCT	1 cut(s)	338
AluI	AGCT	1 cut(s)	338
AlwI	GGATC	1 cut(s)	184
Ama87I	CYCGRG	1 cut(s)	521
ApeKI	GCWGC	1 cut(s)	486
ApoI	RAATTY	3 cut(s)	103, 127, 175
AsuHPI	GGTGA	2 cut(s)	199, 491
AsuNHI	GCTAGC	1 cut(s)	338
AvaI	CYCGRG	1 cut(s)	521
BanI	GGYRCC	1 cut(s)	286
BarI	GAAGNNNNNNTAC	2 cut(s)	426, 458
BbvI	GCAGC	1 cut(s)	498
BccI	CCATC	3 cut(s)	26, 134, 161
BclI	TGATCA	1 cut(s)	19
BfaI	CTAG	1 cut(s)	339
BfuAI	ACCTGC	1 cut(s)	229
BisI	GCNGC	1 cut(s)	487
BlsI	GCNGC	1 cut(s)	488
BmeT110I	CYCGRG	1 cut(s)	521
BmiI	GGNNCC	2 cut(s)	288, 360
BmtI	GCTAGC	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	363
BpuEI	CTTGAG	2 cut(s)	293, 338
BsaJI	CCNNGG	1 cut(s)	522
Bse1I	ACTGG	1 cut(s)	453
Bse3DI	GCAATG	2 cut(s)	127, 349
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	3 cut(s)	37, 217, 449
BseMI	GCAATG	2 cut(s)	127, 349
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	453
BseXI	GCAGC	1 cut(s)	498
BshNI	GGYRCC	1 cut(s)	286
BsiHKCI	CYCGRG	1 cut(s)	521
BsmI	GAATGC	2 cut(s)	160, 488
BsoBI	CYCGRG	1 cut(s)	521
Bsp143I	GATC	2 cut(s)	19, 189
BspACI	CCGC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	355
BspHI	TCATGA	2 cut(s)	61, 145
BspLI	GGNNCC	2 cut(s)	288, 360
BspMI	ACCTGC	1 cut(s)	229
BspOI	GCTAGC	1 cut(s)	342
BspPI	GGATC	1 cut(s)	184
BspT107I	GGYRCC	1 cut(s)	286
BsrDI	GCAATG	2 cut(s)	127, 349
BsrI	ACTGG	1 cut(s)	453
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	2 cut(s)	19, 189
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	1 cut(s)	363
BstF5I	GGATG	3 cut(s)	37, 217, 449
BstKTI	GATC	2 cut(s)	22, 192
BstMBI	GATC	2 cut(s)	19, 189
BstV1I	GCAGC	1 cut(s)	498
BtsCI	GGATG	3 cut(s)	37, 217, 449
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	340
CciI	TCATGA	2 cut(s)	61, 145
CviAII	CATG	4 cut(s)	62, 146, 368, 561
CviJI	RGCY	2 cut(s)	246, 338
CviKI_1	RGCY	2 cut(s)	246, 338
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	2 cut(s)	21, 191
DpnII	GATC	2 cut(s)	19, 189
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
Eco32I	GATATC	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	521
EcoRI	GAATTC	1 cut(s)	175
EcoRV	GATATC	1 cut(s)	111
FaeI	CATG	4 cut(s)	65, 149, 371, 564
FaiI	YATR	9 cut(s)	63, 96, 147, 198, 227, 310, 369, 562, 586
FalI	AAGNNNNNCTT	4 cut(s)	408, 440, 494, 526
FatI	CATG	4 cut(s)	61, 145, 367, 560
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	487
FokI	GGATG	3 cut(s)	44, 224, 436
Fsp4HI	GCNGC	1 cut(s)	487
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	1 cut(s)	487
Hin1II	CATG	4 cut(s)	65, 149, 371, 564
HinfI	GANTC	2 cut(s)	536, 557
HphI	GGTGA	2 cut(s)	199, 491
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	2 cut(s)	166, 517
Hpy188III	TCNNGA	4 cut(s)	62, 146, 272, 362
Hpy8I	GTNNAC	1 cut(s)	350
HpyAV	CCTTC	2 cut(s)	22, 397
HpyCH4V	TGCA	1 cut(s)	486
HpyF3I	CTNAG	1 cut(s)	363
Hsp92II	CATG	4 cut(s)	65, 149, 371, 564
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	19, 189
LpnPI	CCDG	3 cut(s)	224, 375, 466
Lsp1109I	GCAGC	1 cut(s)	498
MaeI	CTAG	1 cut(s)	339
MaeIII	GTNAC	2 cut(s)	382, 420
MalI	GATC	2 cut(s)	21, 191
MboI	GATC	2 cut(s)	19, 189
MboII	GAAGA	3 cut(s)	289, 476, 581
MfeI	CAATTG	1 cut(s)	11
MluCI	AATT	8 cut(s)	11, 103, 127, 175, 216, 255, 292, 551
MnlI	CCTC	4 cut(s)	190, 204, 277, 517
MseI	TTAA	1 cut(s)	542
MslI	CAYNNNNRTG	3 cut(s)	66, 165, 230
MunI	CAATTG	1 cut(s)	11
Mva1269I	GAATGC	2 cut(s)	160, 488
NdeII	GATC	2 cut(s)	19, 189
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	4 cut(s)	65, 149, 371, 564
NlaIV	GGNNCC	2 cut(s)	288, 360
PagI	TCATGA	2 cut(s)	61, 145
PctI	GAATGC	2 cut(s)	160, 488
PfeI	GAWTC	2 cut(s)	536, 557
PkrI	GCNGC	1 cut(s)	488
PspN4I	GGNNCC	2 cut(s)	288, 360
RseI	CAYNNNNRTG	3 cut(s)	66, 165, 230
SaqAI	TTAA	1 cut(s)	542
SatI	GCNGC	1 cut(s)	487
Sau3AI	GATC	2 cut(s)	19, 189
SetI	ASST	7 cut(s)	243, 269, 288, 340, 360, 389, 412
SmiMI	CAYNNNNRTG	3 cut(s)	66, 165, 230
SmlI	CTYRAG	2 cut(s)	272, 353
SmoI	CTYRAG	2 cut(s)	272, 353
Sse9I	AATT	8 cut(s)	11, 103, 127, 175, 216, 255, 292, 551
SsiI	CCGC	1 cut(s)	185
SspI	AATATT	1 cut(s)	400
SspMI	CTAG	1 cut(s)	339
TasI	AATT	8 cut(s)	11, 103, 127, 175, 216, 255, 292, 551
TfiI	GAWTC	2 cut(s)	536, 557
Tru1I	TTAA	1 cut(s)	542
Tru9I	TTAA	1 cut(s)	542
TseI	GCWGC	1 cut(s)	486
TspDTI	ATGAA	8 cut(s)	17, 50, 84, 162, 228, 438, 549, 573
XapI	RAATTY	3 cut(s)	103, 127, 175
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.